Wall clock time and date at job start Tue Mar 31 2020 00:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00105 * 2 1 4 4 C 1.53002 * 109.47143 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47123 * 65.00412 * 4 3 2 6 6 C 1.46502 * 120.00017 * 269.99951 * 5 4 3 7 7 C 1.50697 * 109.47104 * 270.00313 * 6 5 4 8 8 H 1.07995 * 120.00276 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00220 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99614 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00461 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46733 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47345 * 119.99593 * 11 9 7 14 14 H 1.48500 * 109.47289 * 240.00200 * 11 9 7 15 15 C 1.38539 * 120.00541 * 89.99522 * 5 4 3 16 16 C 1.39665 * 120.52962 * 5.00819 * 15 5 4 17 17 C 1.38075 * 118.33346 * 180.02562 * 16 15 5 18 18 C 1.50703 * 120.39947 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.46966 * 84.99694 * 18 17 16 20 20 C 1.53000 * 109.46912 * 324.99782 * 18 17 16 21 21 N 1.32573 * 119.20100 * 0.26550 * 17 16 15 22 22 C 1.31763 * 121.01187 * 359.44772 * 21 17 16 23 23 N 1.31776 * 121.83256 * 0.56886 * 22 21 17 24 24 H 1.08995 * 109.47008 * 300.00196 * 1 2 3 25 25 H 1.09006 * 109.46691 * 59.99771 * 1 2 3 26 26 H 1.08996 * 109.46897 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47167 * 59.99700 * 3 2 1 28 28 H 1.09005 * 109.47220 * 299.99865 * 3 2 1 29 29 H 1.08995 * 109.47095 * 305.00248 * 4 3 2 30 30 H 1.09000 * 109.46992 * 184.99881 * 4 3 2 31 31 H 1.09007 * 109.46784 * 30.00120 * 6 5 4 32 32 H 1.08998 * 109.47530 * 149.99827 * 6 5 4 33 33 H 0.96999 * 119.99816 * 180.02562 * 10 9 7 34 34 H 1.08001 * 120.83322 * 359.97438 * 16 15 5 35 35 H 1.09002 * 109.47152 * 204.99554 * 18 17 16 36 36 H 1.09002 * 109.47075 * 299.99352 * 19 18 17 37 37 H 1.08996 * 109.47407 * 60.00310 * 19 18 17 38 38 H 1.09000 * 109.46986 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.47194 * 299.99742 * 20 18 17 40 40 H 1.08992 * 109.47399 * 59.99914 * 20 18 17 41 41 H 1.09004 * 109.46724 * 180.02562 * 20 18 17 42 42 H 1.08000 * 119.08573 * 180.29106 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3404 7 6 5.5017 -1.2982 -0.9412 8 1 6.2203 -0.5463 -0.6504 9 6 5.8611 -2.6293 -0.9473 10 7 4.9858 -3.5450 -1.3010 11 14 7.5909 -3.1321 -0.4532 12 1 8.3768 -1.9220 -0.1019 13 1 7.5266 -4.0391 0.7208 14 1 8.2449 -3.8347 -1.5863 15 6 4.2714 1.3544 -2.3499 16 6 4.2525 2.7471 -2.2476 17 6 4.5529 3.4908 -3.3715 18 6 4.5458 4.9967 -3.3138 19 6 5.9009 5.4940 -2.8064 20 6 3.4420 5.4655 -2.3636 21 7 4.8419 2.8642 -4.5035 22 6 4.8566 1.5482 -4.5663 23 7 4.5763 0.7992 -3.5190 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8508 0.5684 0.8426 30 1 3.9785 2.1765 0.0902 31 1 3.3857 -1.3632 -0.6714 32 1 3.9139 -1.2122 -2.3645 33 1 5.2385 -4.4815 -1.3049 34 1 4.0083 3.2303 -1.3131 35 1 4.3617 5.3977 -4.3106 36 1 6.0849 5.0931 -1.8096 37 1 6.6872 5.1601 -3.4833 38 1 5.8956 6.5832 -2.7642 39 1 2.4767 5.1112 -2.7252 40 1 3.6261 5.0646 -1.3670 41 1 3.4367 6.5547 -2.3223 42 1 5.1009 1.0700 -5.5034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071231237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:01 Heat of formation + Delta-G solvation = 1.142600 kcal Electronic energy + Delta-G solvation = -22440.636910 eV Core-core repulsion = 19228.049388 eV Total energy + Delta-G solvation = -3212.587522 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41708 -37.95001 -36.40753 -35.53320 -32.73695 -31.87513 -30.24641 -29.59171 -27.23148 -26.77857 -25.88726 -24.29029 -23.44931 -22.56585 -21.30939 -19.52838 -17.06848 -17.00626 -16.36363 -15.93807 -15.71044 -15.07530 -14.69548 -14.60095 -14.45243 -14.21797 -13.98578 -13.61970 -13.34295 -13.04794 -12.54406 -12.19577 -12.16581 -11.93552 -11.58638 -11.41643 -11.24917 -11.19733 -10.99159 -10.91154 -10.85544 -10.50368 -10.32894 -10.08720 -9.82488 -9.45229 -9.40471 -9.07617 -8.41840 -8.33688 -7.04804 -5.96713 -4.02261 1.67938 2.08366 3.31646 3.39103 3.42626 3.68029 4.02948 4.42639 4.46442 4.54806 4.82766 5.08115 5.16217 5.24624 5.26860 5.31781 5.36108 5.43150 5.48980 5.51857 5.54359 5.57267 5.67020 5.69739 5.78418 5.82059 5.84328 5.90163 6.08473 6.17459 6.20966 6.23850 6.36809 6.82713 7.20816 7.39590 7.59352 7.69472 7.92594 8.17541 8.30573 8.32638 8.97958 9.08002 9.61175 11.09521 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.006220 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.252174 B = 4500.365745 C = 5825.532330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.044 3.956 4 C 0.123 3.877 5 N -0.565 5.565 6 C 0.253 3.747 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.894 3.106 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.449 3.551 16 C -0.313 4.313 17 C 0.200 3.800 18 C -0.044 4.044 19 C -0.139 4.139 20 C -0.144 4.144 21 N -0.586 5.586 22 C 0.333 3.667 23 N -0.559 5.559 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.261 0.739 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 15.703 0.979 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.034 4.034 4 C -0.001 4.001 5 N -0.271 5.271 6 C 0.134 3.866 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.722 3.278 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.205 3.795 16 C -0.342 4.342 17 C 0.057 3.943 18 C -0.063 4.063 19 C -0.197 4.197 20 C -0.202 4.202 21 N -0.307 5.307 22 C 0.043 3.957 23 N -0.282 5.282 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.149 0.851 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.803 14.713 0.347 15.820 hybrid contribution 0.567 0.083 1.026 1.175 sum -5.235 14.796 1.373 15.755 Atomic orbital electron populations 1.22696 0.81998 1.02604 0.99103 1.88096 1.18774 1.26898 1.95149 1.23092 0.95207 0.85472 0.99620 1.21501 0.91220 0.99187 0.88232 1.47111 1.64419 1.08688 1.06876 1.19417 0.96551 0.71262 0.99339 1.21490 0.97416 0.92135 1.45248 0.92839 1.24886 0.97215 0.96396 0.95399 1.69956 1.34147 1.00897 1.48116 0.86513 0.84741 0.78434 0.78115 1.20009 1.21030 1.20945 1.18626 0.86091 0.87409 0.87399 1.21848 1.17261 0.93681 1.01431 1.21023 0.89310 0.95671 0.88261 1.19994 0.96282 0.89243 1.00807 1.21764 0.95904 1.00528 1.01459 1.21876 0.98032 1.00804 0.99454 1.68140 1.23012 1.11701 1.27874 1.24547 0.89278 0.85785 0.96109 1.68116 1.20198 1.40802 0.99134 0.94655 0.94657 0.89725 0.92987 0.93630 0.88709 0.89970 0.93832 0.93417 0.92907 0.85100 0.89448 0.92475 0.92283 0.92177 0.92539 0.92179 0.92170 0.79844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.51 9.53 -35.23 -0.34 -6.85 16 3 C 0.04 0.66 6.28 37.16 0.23 0.89 16 4 C 0.12 2.07 5.68 -4.04 -0.02 2.05 16 5 N -0.56 -12.12 2.52 -175.03 -0.44 -12.56 16 6 C 0.25 6.65 5.05 -5.19 -0.03 6.63 16 7 C -0.52 -14.85 9.39 -34.44 -0.32 -15.18 16 8 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 11 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.45 9.38 7.39 -154.78 -1.14 8.24 16 16 C -0.31 -5.33 8.41 -39.11 -0.33 -5.66 16 17 C 0.20 3.23 5.82 -82.33 -0.48 2.75 16 18 C -0.04 -0.53 3.27 -91.77 -0.30 -0.83 16 19 C -0.14 -1.51 9.18 37.16 0.34 -1.17 16 20 C -0.14 -1.42 8.64 37.16 0.32 -1.10 16 21 N -0.59 -10.45 10.37 -10.88 -0.11 -10.56 16 22 C 0.33 6.29 12.28 -92.20 -1.13 5.16 16 23 N -0.56 -12.41 9.23 -13.81 -0.13 -12.53 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.68 8.07 -51.93 -0.42 1.26 16 30 H 0.08 1.14 6.05 -51.93 -0.31 0.82 16 31 H 0.04 1.21 7.12 -51.92 -0.37 0.84 16 32 H 0.05 1.40 7.33 -51.93 -0.38 1.02 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.13 1.87 4.53 -52.49 -0.24 1.63 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.18 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -33.05 347.06 -8.60 -41.64 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.68 Total: -0.50 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.85 Total: 5.03 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: 0.05 Total: -61.57 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.34 Total: -6.85 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.05 -8.60 -41.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.787 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds