Wall clock time and date at job start Tue Mar 31 2020 00:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00105 * 2 1 4 4 C 1.53002 * 109.47143 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47123 * 65.00412 * 4 3 2 6 6 C 1.46502 * 120.00017 * 269.99951 * 5 4 3 7 7 C 1.50697 * 109.47104 * 270.00313 * 6 5 4 8 8 H 1.07995 * 120.00276 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00220 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99614 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00461 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46733 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47345 * 119.99593 * 11 9 7 14 14 H 1.48500 * 109.47289 * 240.00200 * 11 9 7 15 15 C 1.38539 * 120.00541 * 89.99522 * 5 4 3 16 16 C 1.39665 * 120.52962 * 5.00819 * 15 5 4 17 17 C 1.38075 * 118.33346 * 180.02562 * 16 15 5 18 18 C 1.50703 * 120.39947 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.46966 * 84.99694 * 18 17 16 20 20 C 1.53000 * 109.46912 * 324.99782 * 18 17 16 21 21 N 1.32573 * 119.20100 * 0.26550 * 17 16 15 22 22 C 1.31763 * 121.01187 * 359.44772 * 21 17 16 23 23 N 1.31776 * 121.83256 * 0.56886 * 22 21 17 24 24 H 1.08995 * 109.47008 * 300.00196 * 1 2 3 25 25 H 1.09006 * 109.46691 * 59.99771 * 1 2 3 26 26 H 1.08996 * 109.46897 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47167 * 59.99700 * 3 2 1 28 28 H 1.09005 * 109.47220 * 299.99865 * 3 2 1 29 29 H 1.08995 * 109.47095 * 305.00248 * 4 3 2 30 30 H 1.09000 * 109.46992 * 184.99881 * 4 3 2 31 31 H 1.09007 * 109.46784 * 30.00120 * 6 5 4 32 32 H 1.08998 * 109.47530 * 149.99827 * 6 5 4 33 33 H 0.96999 * 119.99816 * 180.02562 * 10 9 7 34 34 H 1.08001 * 120.83322 * 359.97438 * 16 15 5 35 35 H 1.09002 * 109.47152 * 204.99554 * 18 17 16 36 36 H 1.09002 * 109.47075 * 299.99352 * 19 18 17 37 37 H 1.08996 * 109.47407 * 60.00310 * 19 18 17 38 38 H 1.09000 * 109.46986 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.47194 * 299.99742 * 20 18 17 40 40 H 1.08992 * 109.47399 * 59.99914 * 20 18 17 41 41 H 1.09004 * 109.46724 * 180.02562 * 20 18 17 42 42 H 1.08000 * 119.08573 * 180.29106 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3404 7 6 5.5017 -1.2982 -0.9412 8 1 6.2203 -0.5463 -0.6504 9 6 5.8611 -2.6293 -0.9473 10 7 4.9858 -3.5450 -1.3010 11 14 7.5909 -3.1321 -0.4532 12 1 8.3768 -1.9220 -0.1019 13 1 7.5266 -4.0391 0.7208 14 1 8.2449 -3.8347 -1.5863 15 6 4.2714 1.3544 -2.3499 16 6 4.2525 2.7471 -2.2476 17 6 4.5529 3.4908 -3.3715 18 6 4.5458 4.9967 -3.3138 19 6 5.9009 5.4940 -2.8064 20 6 3.4420 5.4655 -2.3636 21 7 4.8419 2.8642 -4.5035 22 6 4.8566 1.5482 -4.5663 23 7 4.5763 0.7992 -3.5190 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8508 0.5684 0.8426 30 1 3.9785 2.1765 0.0902 31 1 3.3857 -1.3632 -0.6714 32 1 3.9139 -1.2122 -2.3645 33 1 5.2385 -4.4815 -1.3049 34 1 4.0083 3.2303 -1.3131 35 1 4.3617 5.3977 -4.3106 36 1 6.0849 5.0931 -1.8096 37 1 6.6872 5.1601 -3.4833 38 1 5.8956 6.5832 -2.7642 39 1 2.4767 5.1112 -2.7252 40 1 3.6261 5.0646 -1.3670 41 1 3.4367 6.5547 -2.3223 42 1 5.1009 1.0700 -5.5034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071231237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:00 Heat of formation + Delta-G solvation = -18.515059 kcal Electronic energy + Delta-G solvation = -22441.489330 eV Core-core repulsion = 19228.049388 eV Total energy + Delta-G solvation = -3213.439942 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.04 seconds Orbital eigenvalues (eV) -41.84635 -39.23990 -37.77548 -36.73401 -34.86332 -33.25103 -31.66556 -31.13765 -28.54498 -27.96877 -27.15335 -25.71732 -24.92313 -24.22735 -22.59687 -20.84667 -18.70207 -18.41925 -18.27768 -17.18994 -16.96132 -16.55022 -16.37921 -15.95132 -15.70181 -15.47331 -15.36199 -14.82194 -14.69324 -14.49765 -13.91620 -13.54049 -13.45911 -13.14121 -12.94766 -12.78332 -12.74968 -12.56043 -12.32650 -12.22848 -12.17810 -12.05082 -11.89383 -11.80159 -11.33874 -11.19372 -10.63811 -10.58073 -10.49467 -9.88514 -8.70899 -8.10982 -6.30572 0.28730 0.61536 1.35689 1.37370 1.48828 2.15633 2.41335 2.91409 3.11095 3.12817 3.26789 3.55724 3.83432 4.11815 4.13549 4.21914 4.22406 4.31578 4.32869 4.44509 4.49689 4.50093 4.57844 4.72743 4.79520 4.82300 4.87117 4.91718 5.01906 5.04154 5.15574 5.21141 5.35130 5.40686 5.44175 5.62897 5.75120 6.00854 6.14797 6.29802 6.47050 6.75868 6.83494 7.37459 7.58414 8.89969 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.006220 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.252174 B = 4500.365745 C = 5825.532330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.416 6.416 3 C 0.049 3.951 4 C 0.118 3.882 5 N -0.578 5.578 6 C 0.281 3.719 7 C -0.534 4.534 8 H 0.046 0.954 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.963 3.037 12 H -0.271 1.271 13 H -0.272 1.272 14 H -0.280 1.280 15 C 0.425 3.575 16 C -0.302 4.302 17 C 0.197 3.803 18 C -0.042 4.042 19 C -0.135 4.135 20 C -0.141 4.141 21 N -0.588 5.588 22 C 0.324 3.676 23 N -0.609 5.609 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.019 0.981 32 H 0.006 0.994 33 H 0.265 0.735 34 H 0.162 0.838 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.747 18.522 2.034 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.335 6.335 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.286 5.286 6 C 0.159 3.841 7 C -0.573 4.573 8 H 0.064 0.936 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.788 3.212 12 H -0.195 1.195 13 H -0.197 1.197 14 H -0.206 1.206 15 C 0.182 3.818 16 C -0.330 4.330 17 C 0.055 3.945 18 C -0.061 4.061 19 C -0.193 4.193 20 C -0.198 4.198 21 N -0.309 5.309 22 C 0.034 3.966 23 N -0.333 5.333 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.037 0.963 32 H 0.024 0.976 33 H 0.074 0.926 34 H 0.179 0.821 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.518 17.584 1.402 18.483 hybrid contribution 0.436 -0.707 0.624 1.039 sum -5.082 16.877 2.027 17.742 Atomic orbital electron populations 1.22846 0.80030 1.03102 1.00713 1.88041 1.21163 1.28840 1.95501 1.23126 0.93475 0.84807 1.01459 1.21785 0.93066 1.00011 0.85633 1.46939 1.65928 1.06892 1.08820 1.18668 0.94883 0.74636 0.95874 1.21719 0.98197 0.92288 1.45137 0.93619 1.25757 1.01365 0.96402 0.95264 1.70079 1.36252 1.01307 1.49019 0.85449 0.79587 0.78160 0.78045 1.19542 1.19733 1.20619 1.19008 0.86940 0.88959 0.86936 1.22061 1.16156 0.91762 1.03021 1.21831 0.87450 0.97900 0.87351 1.20154 0.98022 0.85937 1.01997 1.21760 0.94406 1.02403 1.00738 1.21877 0.96583 1.02540 0.98814 1.68259 1.22757 1.11061 1.28776 1.24962 0.89047 0.86381 0.96204 1.68066 1.21917 1.42773 1.00584 0.91810 0.94101 0.89975 0.88919 0.93579 0.90318 0.86635 0.96282 0.97585 0.92624 0.82073 0.89119 0.92627 0.93885 0.89205 0.93038 0.91609 0.89522 0.77926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.42 -14.71 9.53 -148.98 -1.42 -16.12 16 3 C 0.05 1.37 6.28 71.98 0.45 1.82 16 4 C 0.12 3.88 5.68 86.38 0.49 4.38 16 5 N -0.58 -25.41 2.52 -707.67 -1.78 -27.19 16 6 C 0.28 15.53 5.05 85.63 0.43 15.96 16 7 C -0.53 -31.32 9.39 25.60 0.24 -31.08 16 8 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 9 C 0.01 0.64 5.46 84.65 0.46 1.10 16 10 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 11 Si 0.96 45.86 29.54 68.60 2.03 47.89 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 14 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 15 C 0.42 17.93 7.39 133.18 0.98 18.92 16 16 C -0.30 -9.81 8.41 22.58 0.19 -9.62 16 17 C 0.20 6.04 5.82 42.41 0.25 6.29 16 18 C -0.04 -0.89 3.27 -11.54 -0.04 -0.92 16 19 C -0.14 -2.52 9.18 71.98 0.66 -1.86 16 20 C -0.14 -2.20 8.64 71.98 0.62 -1.57 16 21 N -0.59 -20.56 10.37 -188.35 -1.95 -22.51 16 22 C 0.32 12.43 12.28 180.90 2.22 14.65 16 23 N -0.61 -27.95 9.23 -197.60 -1.82 -29.77 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 2.81 8.07 -2.39 -0.02 2.79 16 30 H 0.12 2.91 6.05 -2.39 -0.01 2.90 16 31 H 0.02 1.13 7.12 -2.38 -0.02 1.12 16 32 H 0.01 0.38 7.33 -2.39 -0.02 0.36 16 33 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.16 4.09 4.53 -2.91 -0.01 4.08 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.96 6.57 -2.39 -0.02 0.95 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.20 6.53 8.06 -2.91 -0.02 6.50 16 Total: -1.00 -75.09 347.06 4.54 -70.55 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.99 Total: 13.92 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 8.21 Total: 20.05 kcal Atomic # 7 Polarization: -131.01 SS G_CDS: -5.28 Total: -136.28 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -1.42 Total: -16.12 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -75.09 4.54 -70.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.040 kcal (2) G-P(sol) polarization free energy of solvation -75.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds