Wall clock time and date at job start Tue Mar 31 2020 01:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47343 * 2 1 4 4 C 1.50697 * 109.47332 * 239.99999 * 2 1 3 5 5 N 1.30176 * 125.50182 * 264.69319 * 4 2 1 6 6 C 1.35757 * 108.86843 * 179.83947 * 5 4 2 7 7 C 1.47324 * 126.23659 * 180.13544 * 6 5 4 8 8 O 1.21621 * 120.00323 * 174.35046 * 7 6 5 9 9 N 1.34778 * 119.99699 * 354.34812 * 7 6 5 10 10 C 1.46498 * 119.99902 * 4.29760 * 9 7 6 11 11 C 1.50699 * 109.47562 * 83.38749 * 10 9 7 12 12 H 1.08002 * 119.99976 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00190 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99859 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00077 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47017 * 90.00080 * 15 13 11 17 17 H 1.48501 * 109.47498 * 209.99735 * 15 13 11 18 18 H 1.48500 * 109.47495 * 330.00399 * 15 13 11 19 19 C 1.46498 * 120.00113 * 184.29012 * 9 7 6 20 20 C 1.52995 * 109.47151 * 124.66714 * 19 9 7 21 21 C 1.52994 * 109.47411 * 244.67380 * 19 9 7 22 22 C 1.36424 * 107.52781 * 0.42186 * 6 5 4 23 23 N 1.35371 * 106.87213 * 359.74633 * 22 6 5 24 24 H 0.97003 * 126.13351 * 180.02562 * 23 22 6 25 25 H 1.08994 * 109.47224 * 299.99963 * 1 2 3 26 26 H 1.09002 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46729 * 60.00057 * 1 2 3 28 28 H 1.08999 * 109.47198 * 119.99714 * 2 1 3 29 29 H 1.09005 * 109.46542 * 59.99624 * 3 2 1 30 30 H 1.08991 * 109.47514 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47034 * 300.00578 * 3 2 1 32 32 H 1.09008 * 109.46759 * 203.38700 * 10 9 7 33 33 H 1.08998 * 109.47376 * 323.38150 * 10 9 7 34 34 H 0.97001 * 119.99549 * 180.02562 * 14 13 11 35 35 H 1.09008 * 109.46779 * 4.67211 * 19 9 7 36 36 H 1.09008 * 109.46873 * 60.00555 * 20 19 9 37 37 H 1.09000 * 109.47630 * 180.02562 * 20 19 9 38 38 H 1.09000 * 109.47617 * 300.00522 * 20 19 9 39 39 H 1.08998 * 109.47416 * 60.00139 * 21 19 9 40 40 H 1.09002 * 109.47411 * 180.02562 * 21 19 9 41 41 H 1.09001 * 109.47248 * 299.99389 * 21 19 9 42 42 H 1.08001 * 126.56397 * 179.75197 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.3768 -1.9643 -1.2917 6 6 2.7732 -2.2492 -2.5585 7 6 3.2385 -3.5570 -3.0520 8 8 3.4699 -3.7131 -4.2358 9 7 3.4077 -4.5805 -2.1916 10 6 3.0399 -4.4214 -0.7825 11 6 1.5629 -4.6711 -0.6175 12 1 0.9585 -4.9228 -1.4764 13 6 0.9832 -4.5783 0.6300 14 7 1.7193 -4.2723 1.6761 15 14 -0.8477 -4.8871 0.8344 16 1 -1.0790 -6.3284 1.1077 17 1 -1.3623 -4.0794 1.9693 18 1 -1.5573 -4.4994 -0.4111 19 6 3.9594 -5.8523 -2.6655 20 6 5.1877 -6.2183 -1.8300 21 6 2.9026 -6.9499 -2.5268 22 6 2.6682 -1.1023 -3.2897 23 7 2.2044 -0.1442 -2.4533 24 1 2.0266 0.7807 -2.6856 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 3.5990 -5.1358 -0.1782 33 1 3.2756 -3.4080 -0.4577 34 1 1.3115 -4.2074 2.5538 35 1 4.2476 -5.7557 -3.7123 36 1 4.8994 -6.3149 -0.7832 37 1 5.5985 -7.1642 -2.1828 38 1 5.9406 -5.4363 -1.9288 39 1 2.0276 -6.6892 -3.1221 40 1 3.3132 -7.8962 -2.8789 41 1 2.6144 -7.0466 -1.4800 42 1 2.9089 -0.9817 -4.3356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073227386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:57 Heat of formation + Delta-G solvation = 17.906171 kcal Electronic energy + Delta-G solvation = -23179.489811 eV Core-core repulsion = 19967.629212 eV Total energy + Delta-G solvation = -3211.860599 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.64293 -38.69165 -35.58323 -35.03092 -32.87431 -32.11461 -30.79159 -28.46524 -27.04700 -26.86059 -26.51734 -23.19792 -22.72028 -22.54153 -20.06013 -19.66785 -17.99492 -17.31939 -16.22412 -15.89725 -15.12391 -14.92355 -14.35867 -14.16313 -13.96611 -13.79968 -13.35954 -13.29915 -12.82822 -12.63639 -12.25957 -12.12466 -12.10435 -11.51824 -11.45160 -11.33021 -11.19190 -11.04114 -10.81813 -10.75154 -10.66267 -10.56910 -10.22000 -9.73986 -9.46677 -9.33819 -9.19337 -8.79384 -8.11101 -7.97094 -7.36850 -5.82335 -3.79921 2.21502 3.15594 3.36849 3.41481 3.43472 3.48828 4.12962 4.40736 4.58845 4.68604 5.03156 5.24351 5.41683 5.47332 5.52942 5.57626 5.68305 5.79468 5.83543 5.85072 5.91998 5.97482 6.01062 6.10918 6.23314 6.32418 6.40589 6.49055 6.51168 6.52330 6.55529 6.83722 7.02326 7.07904 7.19745 7.65714 7.76453 8.08096 8.12708 8.51386 8.54090 8.66258 9.18222 9.28417 9.79655 11.26283 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.008918 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.327176 B = 3139.003055 C = 4683.888885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.007 4.007 3 C -0.148 4.148 4 C 0.194 3.806 5 N -0.383 5.383 6 C -0.039 4.039 7 C 0.597 3.403 8 O -0.588 6.588 9 N -0.577 5.577 10 C 0.227 3.773 11 C -0.490 4.490 12 H 0.048 0.952 13 C 0.070 3.930 14 N -0.892 5.892 15 Si 0.878 3.122 16 H -0.285 1.285 17 H -0.288 1.288 18 H -0.279 1.279 19 C 0.135 3.865 20 C -0.158 4.158 21 C -0.152 4.152 22 C 0.006 3.994 23 N -0.567 5.567 24 H 0.412 0.588 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.026 0.974 33 H 0.080 0.920 34 H 0.256 0.744 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 9.046 -3.906 10.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 C -0.206 4.206 4 C -0.070 4.070 5 N -0.101 5.101 6 C -0.169 4.169 7 C 0.386 3.614 8 O -0.470 6.470 9 N -0.305 5.305 10 C 0.108 3.892 11 C -0.529 4.529 12 H 0.066 0.934 13 C -0.131 4.131 14 N -0.533 5.533 15 Si 0.707 3.293 16 H -0.211 1.211 17 H -0.214 1.214 18 H -0.204 1.204 19 C 0.031 3.969 20 C -0.216 4.216 21 C -0.210 4.210 22 C -0.133 4.133 23 N -0.171 5.171 24 H 0.249 0.751 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.961 8.299 -3.608 9.260 hybrid contribution -1.371 0.787 -0.547 1.673 sum 0.590 9.086 -4.155 10.008 Atomic orbital electron populations 1.21810 0.93940 1.03234 1.01047 1.19528 0.95794 0.94036 0.93374 1.21886 1.01453 0.95452 1.01826 1.23702 1.05535 0.90639 0.87126 1.71424 1.11624 1.09438 1.17592 1.20639 1.10407 0.94553 0.91346 1.16969 0.76933 0.82773 0.84760 1.90652 1.55871 1.84163 1.16361 1.48221 1.59451 1.10322 1.12520 1.19909 0.95301 1.00179 0.73801 1.21232 0.93425 1.45233 0.93044 0.93395 1.24683 0.96631 0.95777 0.95966 1.69930 1.34819 1.49669 0.98872 0.86831 0.87157 0.77936 0.77386 1.21137 1.21414 1.20381 1.20858 0.93096 0.84327 0.98650 1.22123 0.97358 1.00467 1.01604 1.22066 0.98629 0.96517 1.03812 1.22400 1.04815 0.88942 0.97107 1.43157 1.51484 1.12132 1.10296 0.75095 0.92078 0.91262 0.93428 0.87303 0.91512 0.92233 0.93351 0.95652 0.90222 0.93434 0.89842 0.91409 0.92473 0.93071 0.92986 0.93383 0.90698 0.80221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.18 37.16 0.34 -1.65 16 2 C -0.01 -0.10 3.39 -91.77 -0.31 -0.41 16 3 C -0.15 -1.54 8.94 37.16 0.33 -1.21 16 4 C 0.19 3.39 6.86 -154.94 -1.06 2.32 16 5 N -0.38 -8.41 7.09 -7.23 -0.05 -8.46 16 6 C -0.04 -0.84 6.64 -83.09 -0.55 -1.39 16 7 C 0.60 13.97 7.60 -12.56 -0.10 13.87 16 8 O -0.59 -14.19 16.24 5.26 0.09 -14.10 16 9 N -0.58 -13.30 2.38 -168.77 -0.40 -13.70 16 10 C 0.23 5.76 4.12 -5.20 -0.02 5.74 16 11 C -0.49 -13.32 7.46 -34.44 -0.26 -13.58 16 12 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 13 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 14 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 15 Si 0.88 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 19 C 0.13 2.69 3.24 -67.94 -0.22 2.48 16 20 C -0.16 -2.73 9.10 37.15 0.34 -2.40 16 21 C -0.15 -2.92 8.92 37.15 0.33 -2.59 16 22 C 0.01 0.10 11.75 -16.64 -0.20 -0.09 16 23 N -0.57 -8.02 5.84 -10.07 -0.06 -8.08 16 24 H 0.41 4.05 8.14 -40.82 -0.33 3.71 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.41 7.41 -51.93 -0.38 0.03 16 32 H 0.03 0.67 6.20 -51.92 -0.32 0.35 16 33 H 0.08 2.15 5.27 -51.93 -0.27 1.88 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.08 1.68 6.93 -51.92 -0.36 1.32 16 36 H 0.07 1.26 6.50 -51.92 -0.34 0.92 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.58 7.29 -51.93 -0.38 1.20 16 42 H 0.18 2.54 8.06 -52.49 -0.42 2.11 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -32.24 341.67 -7.62 -39.86 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.58 Total: 4.26 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.47 Total: 2.91 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.23 Total: -54.61 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.24 -7.62 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073227386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.763 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds