Wall clock time and date at job start Tue Mar 31 2020 01:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47120 * 2 1 4 4 C 1.52999 * 109.47213 * 240.00092 * 2 1 3 5 5 C 1.53000 * 109.47217 * 120.00075 * 2 1 3 6 6 C 1.52996 * 109.47389 * 59.99708 * 5 2 1 7 7 C 1.50696 * 109.47220 * 180.02562 * 6 5 2 8 8 O 1.21290 * 120.00012 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99736 * 179.97438 * 7 6 5 10 10 C 1.40159 * 119.99983 * 179.97438 * 9 7 6 11 11 C 1.40409 * 125.97033 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86602 * 179.73843 * 11 10 9 13 13 N 1.34966 * 107.86079 * 0.39163 * 12 11 10 14 14 C 1.46500 * 125.97782 * 179.87198 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71059 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31219 * 125.97718 * 179.97438 * 10 9 7 24 24 H 1.09002 * 109.47148 * 300.00536 * 1 2 3 25 25 H 1.09003 * 109.47066 * 59.99888 * 1 2 3 26 26 H 1.08994 * 109.47128 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47172 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47242 * 300.00004 * 3 2 1 29 29 H 1.08992 * 109.47104 * 59.99947 * 3 2 1 30 30 H 1.09005 * 109.47289 * 299.99698 * 4 2 1 31 31 H 1.08994 * 109.47314 * 59.99908 * 4 2 1 32 32 H 1.09006 * 109.47548 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.46562 * 299.99748 * 5 2 1 34 34 H 1.09003 * 109.47100 * 180.02562 * 5 2 1 35 35 H 1.09001 * 109.46879 * 60.00047 * 6 5 2 36 36 H 1.09006 * 109.47056 * 300.00623 * 6 5 2 37 37 H 0.97003 * 120.00166 * 0.02562 * 9 7 6 38 38 H 1.08002 * 126.06850 * 0.02562 * 11 10 9 39 39 H 1.08003 * 126.07024 * 180.26845 * 12 11 10 40 40 H 1.09004 * 109.47078 * 4.71821 * 14 13 12 41 41 H 1.08993 * 109.47364 * 244.71592 * 14 13 12 42 42 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1637 1.2493 7 6 2.0318 -2.8739 2.4800 8 8 2.7285 -2.2842 3.2788 9 7 1.7057 -4.1640 2.6936 10 6 2.1728 -4.8248 3.8380 11 6 2.9835 -4.2666 4.8394 12 6 3.2090 -5.2211 5.7706 13 7 2.5750 -6.3446 5.3738 14 6 2.5600 -7.6228 6.0894 15 6 1.1341 -8.0453 6.3333 16 1 0.3205 -7.4241 5.9892 17 6 0.8683 -9.2250 6.9956 18 7 1.8591 -9.9842 7.4099 19 14 -0.8991 -9.7491 7.2973 20 1 -0.9144 -11.0477 8.0175 21 1 -1.5874 -8.7200 8.1175 22 1 -1.6006 -9.8961 5.9967 23 7 1.9283 -6.0728 4.1614 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2491 33 1 1.6766 -0.2073 2.1392 34 1 3.1300 -0.7209 1.2494 35 1 1.8933 -2.6776 0.3593 36 1 0.4399 -2.1637 1.2493 37 1 1.1482 -4.6356 2.0550 38 1 3.3566 -3.2534 4.8642 39 1 3.7944 -5.1055 6.6709 40 1 3.0740 -7.5108 7.0441 41 1 3.0661 -8.3802 5.4910 42 1 2.7769 -9.7122 7.2531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078135038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:41 Heat of formation + Delta-G solvation = 16.143110 kcal Electronic energy + Delta-G solvation = -21175.036191 eV Core-core repulsion = 17963.099139 eV Total energy + Delta-G solvation = -3211.937051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76452 -39.54950 -37.88206 -34.82171 -33.66708 -31.70185 -30.57457 -29.38013 -27.58904 -27.56745 -26.44085 -24.84290 -22.98152 -21.44778 -20.35129 -19.55504 -18.81739 -17.19260 -17.06065 -16.52837 -15.90754 -15.22649 -14.83094 -14.70540 -14.42185 -14.17365 -13.79764 -13.52071 -13.49050 -13.08489 -12.76515 -12.43981 -12.29697 -12.11852 -12.05856 -11.95518 -11.82138 -11.38823 -11.17033 -10.85632 -10.82124 -10.80850 -10.75719 -10.44246 -10.16790 -10.03674 -9.57493 -9.00565 -8.58957 -8.20429 -7.52301 -6.58915 -4.32960 2.31131 2.75080 2.86815 3.37126 3.38839 3.57743 3.66821 3.79922 4.39851 4.43356 4.45024 4.53766 4.78514 4.94425 5.03980 5.14875 5.24112 5.31700 5.33888 5.38840 5.49574 5.49986 5.62655 5.63455 5.71803 5.75515 5.76469 5.90342 6.00227 6.12884 6.14680 6.22545 6.41321 6.51814 6.60047 6.74464 7.36353 7.48388 7.70769 7.82932 8.25516 8.33489 8.54238 8.61781 9.35281 10.78628 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.033611 B = 0.002879 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.861033 B = 9721.700628 C =10199.278522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.093 4.093 6 C -0.140 4.140 7 C 0.517 3.483 8 O -0.519 6.519 9 N -0.633 5.633 10 C 0.258 3.742 11 C -0.285 4.285 12 C 0.050 3.950 13 N -0.318 5.318 14 C 0.249 3.751 15 C -0.608 4.608 16 H 0.063 0.937 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.303 5.303 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.411 0.589 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 18.708 -15.075 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.130 4.130 6 C -0.179 4.179 7 C 0.303 3.697 8 O -0.394 6.394 9 N -0.281 5.281 10 C 0.004 3.996 11 C -0.316 4.316 12 C -0.100 4.100 13 N -0.100 5.100 14 C 0.131 3.869 15 C -0.646 4.646 16 H 0.081 0.919 17 C -0.182 4.182 18 N -0.540 5.540 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.211 1.211 23 N -0.134 5.134 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.246 0.754 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.422 16.755 -14.108 21.949 hybrid contribution 1.074 1.569 -0.713 2.031 sum -0.348 18.324 -14.821 23.570 Atomic orbital electron populations 1.21964 0.94606 1.01976 1.01795 1.20583 0.95704 0.95634 0.95243 1.21850 1.01093 0.95182 1.01676 1.21963 1.01169 1.00344 0.96838 1.21405 1.01488 0.92635 0.97522 1.21811 1.02989 0.97308 0.95838 1.20814 0.80301 0.80529 0.88035 1.90634 1.36819 1.65477 1.46421 1.42597 1.51745 1.11781 1.21997 1.19173 0.98795 0.91828 0.89761 1.21539 1.11055 1.02388 0.96664 1.22569 0.99756 0.87230 1.00437 1.48785 1.35071 1.11118 1.15007 1.19757 1.00097 0.76800 0.90234 1.22101 0.90922 1.09962 1.41617 0.91866 1.25931 1.06586 0.92596 0.93095 1.70852 1.00218 1.38906 1.44030 0.83417 0.73173 0.76337 0.76688 1.20505 1.21234 1.21133 1.77345 1.21505 1.13204 1.01333 0.92510 0.92759 0.92305 0.92580 0.92754 0.92559 0.92322 0.92761 0.92537 0.90950 0.90975 0.88416 0.88383 0.75424 0.82163 0.81525 0.93634 0.94785 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.12 37.16 0.30 -0.65 16 2 C -0.07 -0.50 0.80 -154.51 -0.12 -0.62 16 3 C -0.14 -0.95 8.47 37.16 0.31 -0.63 16 4 C -0.15 -0.93 8.12 37.16 0.30 -0.63 16 5 C -0.09 -0.82 3.56 -26.73 -0.10 -0.92 16 6 C -0.14 -1.23 4.99 -27.89 -0.14 -1.37 16 7 C 0.52 7.15 7.80 -10.99 -0.09 7.06 16 8 O -0.52 -8.90 13.11 5.55 0.07 -8.83 16 9 N -0.63 -9.69 5.45 -11.13 -0.06 -9.76 16 10 C 0.26 5.24 8.11 -154.39 -1.25 3.99 16 11 C -0.29 -5.75 9.61 -39.83 -0.38 -6.13 16 12 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 13 N -0.32 -7.54 3.67 -62.56 -0.23 -7.77 16 14 C 0.25 6.37 5.57 -5.19 -0.03 6.34 16 15 C -0.61 -17.21 9.24 -34.44 -0.32 -17.53 16 16 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 17 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 18 N -0.90 -26.44 13.65 55.43 0.76 -25.68 16 19 Si 1.08 24.98 29.90 -169.99 -5.08 19.90 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 N -0.30 -7.10 12.42 31.44 0.39 -6.71 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.10 0.69 6.43 -51.93 -0.33 0.36 16 36 H 0.10 0.71 6.43 -51.93 -0.33 0.38 16 37 H 0.41 5.05 8.82 -40.82 -0.36 4.69 16 38 H 0.16 3.12 5.92 -52.49 -0.31 2.81 16 39 H 0.17 2.77 8.06 -52.48 -0.42 2.35 16 40 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 41 H 0.03 0.90 8.00 -51.93 -0.42 0.49 16 42 H 0.27 7.63 7.22 -40.82 -0.29 7.34 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -33.31 343.49 -7.34 -40.65 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.56 Total: 2.76 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.80 Total: -9.74 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.86 Total: -49.92 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.31 -7.34 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078135038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.793 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds