Wall clock time and date at job start Tue Mar 31 2020 01:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47120 * 2 1 4 4 C 1.52999 * 109.47213 * 240.00092 * 2 1 3 5 5 C 1.53000 * 109.47217 * 120.00075 * 2 1 3 6 6 C 1.52996 * 109.47389 * 59.99708 * 5 2 1 7 7 C 1.50696 * 109.47220 * 180.02562 * 6 5 2 8 8 O 1.21290 * 120.00012 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99736 * 179.97438 * 7 6 5 10 10 C 1.40159 * 119.99983 * 179.97438 * 9 7 6 11 11 C 1.40409 * 125.97033 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86602 * 179.73843 * 11 10 9 13 13 N 1.34966 * 107.86079 * 0.39163 * 12 11 10 14 14 C 1.46500 * 125.97782 * 179.87198 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71059 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31219 * 125.97718 * 179.97438 * 10 9 7 24 24 H 1.09002 * 109.47148 * 300.00536 * 1 2 3 25 25 H 1.09003 * 109.47066 * 59.99888 * 1 2 3 26 26 H 1.08994 * 109.47128 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47172 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47242 * 300.00004 * 3 2 1 29 29 H 1.08992 * 109.47104 * 59.99947 * 3 2 1 30 30 H 1.09005 * 109.47289 * 299.99698 * 4 2 1 31 31 H 1.08994 * 109.47314 * 59.99908 * 4 2 1 32 32 H 1.09006 * 109.47548 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.46562 * 299.99748 * 5 2 1 34 34 H 1.09003 * 109.47100 * 180.02562 * 5 2 1 35 35 H 1.09001 * 109.46879 * 60.00047 * 6 5 2 36 36 H 1.09006 * 109.47056 * 300.00623 * 6 5 2 37 37 H 0.97003 * 120.00166 * 0.02562 * 9 7 6 38 38 H 1.08002 * 126.06850 * 0.02562 * 11 10 9 39 39 H 1.08003 * 126.07024 * 180.26845 * 12 11 10 40 40 H 1.09004 * 109.47078 * 4.71821 * 14 13 12 41 41 H 1.08993 * 109.47364 * 244.71592 * 14 13 12 42 42 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1637 1.2493 7 6 2.0318 -2.8739 2.4800 8 8 2.7285 -2.2842 3.2788 9 7 1.7057 -4.1640 2.6936 10 6 2.1728 -4.8248 3.8380 11 6 2.9835 -4.2666 4.8394 12 6 3.2090 -5.2211 5.7706 13 7 2.5750 -6.3446 5.3738 14 6 2.5600 -7.6228 6.0894 15 6 1.1341 -8.0453 6.3333 16 1 0.3205 -7.4241 5.9892 17 6 0.8683 -9.2250 6.9956 18 7 1.8591 -9.9842 7.4099 19 14 -0.8991 -9.7491 7.2973 20 1 -0.9144 -11.0477 8.0175 21 1 -1.5874 -8.7200 8.1175 22 1 -1.6006 -9.8961 5.9967 23 7 1.9283 -6.0728 4.1614 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2491 33 1 1.6766 -0.2073 2.1392 34 1 3.1300 -0.7209 1.2494 35 1 1.8933 -2.6776 0.3593 36 1 0.4399 -2.1637 1.2493 37 1 1.1482 -4.6356 2.0550 38 1 3.3566 -3.2534 4.8642 39 1 3.7944 -5.1055 6.6709 40 1 3.0740 -7.5108 7.0441 41 1 3.0661 -8.3802 5.4910 42 1 2.7769 -9.7122 7.2531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078135038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:40 Heat of formation + Delta-G solvation = -3.881606 kcal Electronic energy + Delta-G solvation = -21175.904528 eV Core-core repulsion = 17963.099139 eV Total energy + Delta-G solvation = -3212.805388 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.30198 -40.77283 -38.59891 -36.41112 -35.50998 -33.00681 -31.88869 -31.03523 -28.26912 -28.08140 -28.06788 -25.99114 -24.81304 -22.79089 -21.91821 -20.92312 -19.43075 -19.24401 -18.35976 -17.89196 -16.99865 -16.78041 -16.06050 -15.72623 -15.59753 -15.31674 -15.15414 -14.95307 -14.47224 -14.26337 -13.99656 -13.90247 -13.71233 -13.35545 -13.23482 -12.70667 -12.64559 -12.61263 -12.48826 -12.02266 -11.97073 -11.95851 -11.67118 -11.44916 -11.38182 -11.36676 -11.01460 -10.85076 -10.70422 -9.85120 -9.21925 -8.79031 -6.57440 0.87902 1.31384 1.41186 1.50723 1.57056 1.78856 2.18135 2.31505 2.48617 2.99909 3.54693 3.81493 3.86437 3.95773 4.09605 4.13086 4.30521 4.41718 4.54803 4.61326 4.71178 4.75736 4.78490 4.81661 4.84605 4.89215 4.99072 5.08482 5.08978 5.13049 5.16957 5.22411 5.31828 5.44951 5.53808 5.58334 5.59521 5.81999 5.92193 6.22115 6.25817 6.40002 6.93606 7.11975 7.18529 8.56942 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.033611 B = 0.002879 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.861033 B = 9721.700628 C =10199.278522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.147 4.147 5 C -0.090 4.090 6 C -0.127 4.127 7 C 0.516 3.484 8 O -0.553 6.553 9 N -0.628 5.628 10 C 0.266 3.734 11 C -0.292 4.292 12 C 0.054 3.946 13 N -0.345 5.345 14 C 0.259 3.741 15 C -0.622 4.622 16 H 0.045 0.955 17 C -0.019 4.019 18 N -0.923 5.923 19 Si 1.120 2.880 20 H -0.275 1.275 21 H -0.271 1.271 22 H -0.274 1.274 23 N -0.346 5.346 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.425 0.575 38 H 0.169 0.831 39 H 0.201 0.799 40 H 0.053 0.947 41 H 0.017 0.983 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 19.750 -16.331 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.204 4.204 5 C -0.128 4.128 6 C -0.166 4.166 7 C 0.305 3.695 8 O -0.429 6.429 9 N -0.278 5.278 10 C 0.011 3.989 11 C -0.323 4.323 12 C -0.094 4.094 13 N -0.127 5.127 14 C 0.140 3.860 15 C -0.660 4.660 16 H 0.063 0.937 17 C -0.219 4.219 18 N -0.559 5.559 19 Si 0.941 3.059 20 H -0.200 1.200 21 H -0.196 1.196 22 H -0.200 1.200 23 N -0.177 5.177 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.263 0.737 38 H 0.186 0.814 39 H 0.217 0.783 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.530 17.829 -15.400 23.694 hybrid contribution 1.490 1.396 -0.390 2.079 sum -1.040 19.225 -15.790 24.900 Atomic orbital electron populations 1.21978 0.93919 1.02548 1.01977 1.20541 0.96175 0.95476 0.94492 1.21865 1.00897 0.95232 1.01942 1.21975 1.00959 1.00801 0.96639 1.21376 1.00653 0.92758 0.98024 1.21897 1.04303 0.96570 0.93877 1.21813 0.79155 0.79655 0.88860 1.90613 1.38319 1.65990 1.47955 1.42826 1.51843 1.12241 1.20843 1.19579 0.97454 0.91061 0.90824 1.21745 1.11216 1.02616 0.96753 1.23183 0.98826 0.86058 1.01379 1.48581 1.36997 1.11278 1.15805 1.19420 0.98591 0.77645 0.90338 1.22281 0.91821 1.10112 1.41765 0.93662 1.27305 1.09697 0.92537 0.92353 1.70948 1.00327 1.39459 1.45144 0.82877 0.69140 0.76547 0.77348 1.19954 1.19643 1.19963 1.77263 1.23438 1.14991 1.02008 0.93047 0.91949 0.91522 0.92957 0.91773 0.93023 0.91506 0.91967 0.92959 0.92476 0.92349 0.85793 0.85944 0.73697 0.81410 0.78252 0.92903 0.96563 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.12 71.98 0.58 -0.94 16 2 C -0.07 -0.79 0.80 -52.18 -0.04 -0.83 16 3 C -0.14 -1.71 8.47 71.98 0.61 -1.10 16 4 C -0.15 -1.48 8.12 71.98 0.58 -0.89 16 5 C -0.09 -1.46 3.56 30.59 0.11 -1.36 16 6 C -0.13 -1.92 4.99 29.85 0.15 -1.77 16 7 C 0.52 13.46 7.80 87.66 0.68 14.14 16 8 O -0.55 -18.51 13.11 -3.06 -0.04 -18.55 16 9 N -0.63 -18.36 5.45 -307.52 -1.68 -20.04 16 10 C 0.27 10.68 8.11 133.32 1.08 11.76 16 11 C -0.29 -11.61 9.61 22.11 0.21 -11.39 16 12 C 0.05 2.16 11.44 83.52 0.96 3.11 16 13 N -0.34 -16.50 3.67 -351.83 -1.29 -17.79 16 14 C 0.26 13.51 5.57 85.64 0.48 13.99 16 15 C -0.62 -35.66 9.24 25.60 0.24 -35.43 16 16 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 17 C -0.02 -1.08 5.46 84.65 0.46 -0.62 16 18 N -0.92 -54.20 13.65 21.45 0.29 -53.91 16 19 Si 1.12 49.74 29.90 68.60 2.05 51.80 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 N -0.35 -16.34 12.42 -54.45 -0.68 -17.02 16 24 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.58 6.43 -2.39 -0.02 0.57 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.56 6.43 -2.38 -0.02 0.55 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.06 1.10 8.10 -2.39 -0.02 1.09 16 34 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.12 1.31 6.43 -2.39 -0.02 1.29 16 36 H 0.12 1.34 6.43 -2.38 -0.02 1.33 16 37 H 0.43 9.71 8.82 -92.71 -0.82 8.89 16 38 H 0.17 6.43 5.92 -2.91 -0.02 6.41 16 39 H 0.20 6.35 8.06 -2.91 -0.02 6.33 16 40 H 0.05 2.64 7.94 -2.39 -0.02 2.62 16 41 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 42 H 0.26 15.15 7.22 -92.71 -0.67 14.48 16 Total: -1.00 -72.26 343.49 5.06 -67.20 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.30 Total: 19.63 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 6.10 Total: -11.32 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -3.35 Total: -108.75 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.04 Total: -18.55 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.80 kcal Total: -72.26 5.06 -67.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078135038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.314 kcal (2) G-P(sol) polarization free energy of solvation -72.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds