Wall clock time and date at job start Tue Mar 31 2020 01:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47101 * 2 1 4 4 C 1.50691 * 109.47236 * 120.00323 * 2 1 3 5 5 N 1.29942 * 126.28857 * 300.02515 * 4 2 1 6 6 O 1.21304 * 110.25204 * 179.68752 * 5 4 2 7 7 C 1.33640 * 109.81356 * 0.46456 * 6 5 4 8 8 C 1.50697 * 126.55705 * 179.80847 * 7 6 5 9 9 N 1.46902 * 109.46645 * 264.33630 * 8 7 6 10 10 C 1.46899 * 110.99791 * 195.18669 * 9 8 7 11 11 C 1.50700 * 109.47315 * 169.99861 * 10 9 8 12 12 H 1.07998 * 119.99944 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00357 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99557 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00319 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.47086 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47451 * 119.99629 * 15 13 11 18 18 H 1.48497 * 109.47470 * 239.99915 * 15 13 11 19 19 C 1.46899 * 111.00280 * 71.22904 * 9 8 7 20 20 C 1.53001 * 109.47146 * 58.80910 * 19 9 8 21 21 C 1.52997 * 117.50048 * 245.60936 * 20 19 9 22 22 C 1.53001 * 117.50156 * 176.94764 * 20 19 9 23 23 N 1.31135 * 106.89150 * 359.54131 * 7 6 5 24 24 H 1.09004 * 109.47416 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47097 * 299.99650 * 1 2 3 26 26 H 1.08996 * 109.47684 * 59.99435 * 1 2 3 27 27 H 1.09004 * 109.46579 * 240.00262 * 2 1 3 28 28 H 1.08995 * 109.46839 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46976 * 300.00364 * 3 2 1 30 30 H 1.09005 * 109.46860 * 60.00205 * 3 2 1 31 31 H 1.08997 * 109.47788 * 144.33474 * 8 7 6 32 32 H 1.08996 * 109.46924 * 24.32505 * 8 7 6 33 33 H 1.09003 * 109.47610 * 49.99716 * 10 9 8 34 34 H 1.09000 * 109.47218 * 289.99894 * 10 9 8 35 35 H 0.97000 * 119.99642 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.46911 * 178.80257 * 19 9 8 37 37 H 1.08989 * 109.47341 * 298.80690 * 19 9 8 38 38 H 1.09000 * 115.54774 * 31.27571 * 20 19 9 39 39 H 1.09007 * 117.49373 * 0.02562 * 21 20 19 40 40 H 1.08998 * 117.50221 * 145.01361 * 21 20 19 41 41 H 1.08996 * 117.49757 * 214.97676 * 22 20 19 42 42 H 1.09003 * 117.49391 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2303 5 7 1.7946 -0.3750 2.4630 6 8 2.3362 -1.1516 3.2214 7 6 2.9992 -2.0785 2.5234 8 6 3.8059 -3.2199 3.0867 9 7 5.2219 -2.8339 3.1505 10 6 6.0798 -4.0102 3.3461 11 6 7.5226 -3.6159 3.1621 12 1 7.7768 -2.5938 2.9232 13 6 8.5182 -4.5600 3.2985 14 7 8.2086 -5.8046 3.5899 15 14 10.3065 -4.0714 3.0697 16 1 10.3869 -2.6235 2.7493 17 1 11.0583 -4.3445 4.3208 18 1 10.8959 -4.8577 1.9564 19 6 5.4486 -1.8358 4.2043 20 6 5.0103 -2.4098 5.5532 21 6 3.8185 -1.7489 6.2485 22 6 5.2336 -1.5447 6.7952 23 7 2.8087 -1.8084 1.2543 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.6961 -4.0940 2.4450 32 1 3.4487 -3.4574 4.0887 33 1 5.8169 -4.7770 2.6174 34 1 5.9358 -4.4016 4.3532 35 1 8.9090 -6.4687 3.6863 36 1 6.5083 -1.5836 4.2439 37 1 4.8695 -0.9388 3.9857 38 1 5.1231 -3.4882 5.6641 39 1 3.3463 -0.9054 5.7447 40 1 3.1473 -2.3924 6.8171 41 1 5.4928 -2.0540 7.7233 42 1 5.6923 -0.5664 6.6512 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081043673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:41 Heat of formation + Delta-G solvation = 87.689210 kcal Electronic energy + Delta-G solvation = -22249.710058 eV Core-core repulsion = 19040.875478 eV Total energy + Delta-G solvation = -3208.834580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -45.28500 -38.31427 -36.76455 -35.49735 -34.28093 -32.70243 -31.52362 -28.01023 -27.38046 -27.18459 -24.55317 -24.39549 -22.69261 -22.05014 -21.77337 -20.15646 -19.19290 -17.81078 -17.25942 -16.41111 -15.65421 -15.13110 -15.05304 -14.71554 -14.39535 -14.08258 -13.92626 -13.54223 -13.25986 -12.63831 -12.43157 -12.20765 -11.90372 -11.77495 -11.67199 -11.58323 -11.29769 -11.23361 -11.15912 -11.07146 -11.01199 -10.75495 -10.67802 -10.61428 -10.13300 -9.89450 -9.65017 -9.49937 -9.22856 -8.49274 -7.47197 -6.08359 -4.09025 1.41721 2.50128 3.11835 3.29184 3.37196 3.41898 3.75839 4.15152 4.23900 4.39603 4.81943 4.85097 4.90271 4.94912 5.09609 5.27268 5.30381 5.35762 5.40994 5.41267 5.57918 5.60968 5.68779 5.72263 5.78832 5.84315 5.91830 6.01178 6.05905 6.07871 6.13826 6.24943 6.32628 6.36815 6.42183 6.76365 7.10420 7.21084 7.67368 7.90096 8.03015 8.38353 8.45897 8.97023 9.55071 11.02520 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.018035 B = 0.004607 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.198537 B = 6076.367335 C = 6908.792375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.003 4.003 3 C -0.144 4.144 4 C 0.169 3.831 5 N -0.393 5.393 6 O 0.069 5.931 7 C 0.211 3.789 8 C 0.138 3.862 9 N -0.522 5.522 10 C 0.193 3.807 11 C -0.505 4.505 12 H 0.064 0.936 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.090 3.910 20 C -0.177 4.177 21 C -0.187 4.187 22 C -0.175 4.175 23 N -0.473 5.473 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.005 0.995 35 H 0.261 0.739 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.017 9.316 -1.096 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 C -0.202 4.202 4 C -0.104 4.104 5 N -0.102 5.102 6 O 0.013 5.987 7 C -0.010 4.010 8 C 0.007 3.993 9 N -0.246 5.246 10 C 0.069 3.931 11 C -0.544 4.544 12 H 0.082 0.918 13 C -0.143 4.143 14 N -0.537 5.537 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.038 4.038 20 C -0.197 4.197 21 C -0.224 4.224 22 C -0.213 4.213 23 N -0.207 5.207 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.023 0.977 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.241 9.962 -1.748 16.662 hybrid contribution 0.943 -0.383 0.840 1.320 sum -12.298 9.579 -0.908 15.615 Atomic orbital electron populations 1.21833 0.93203 1.02420 1.02659 1.19499 0.96074 0.95347 0.91372 1.21834 1.01723 0.94076 1.02589 1.25783 0.96966 0.93185 0.94451 1.74503 1.18775 1.14042 1.02900 1.85285 1.48059 1.29973 1.35404 1.29049 0.93004 0.93289 0.85680 1.20612 0.89215 0.89170 1.00281 1.62339 1.00758 1.16310 1.45208 1.19851 0.91344 0.85849 0.96089 1.21101 0.89991 0.95975 1.47314 0.91788 1.24936 0.99260 0.94851 0.95297 1.69953 1.33062 1.01832 1.48822 0.86451 0.84666 0.78733 0.77647 1.19671 1.21107 1.21005 1.21780 1.02427 0.93744 0.85848 1.23146 1.01646 0.99944 0.94977 1.23051 0.91123 1.03468 1.04794 1.22805 0.99174 1.01420 0.97866 1.71952 1.16331 1.14002 1.18399 0.92367 0.91996 0.91311 0.88149 0.92130 0.91320 0.92016 0.86915 0.91186 0.94705 0.97732 0.92911 0.88815 0.93067 0.86997 0.89033 0.89491 0.89308 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.18 37.16 0.34 -1.04 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.14 -1.49 9.18 37.16 0.34 -1.15 16 4 C 0.17 2.64 6.72 -156.38 -1.05 1.59 16 5 N -0.39 -6.35 12.16 30.90 0.38 -5.97 16 6 O 0.07 1.13 11.14 18.11 0.20 1.33 16 7 C 0.21 3.57 7.20 -13.05 -0.09 3.48 16 8 C 0.14 2.32 5.45 -4.98 -0.03 2.29 16 9 N -0.52 -10.50 4.65 -237.52 -1.11 -11.60 16 10 C 0.19 4.59 4.57 -4.98 -0.02 4.57 16 11 C -0.51 -13.45 8.44 -34.44 -0.29 -13.74 16 12 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -25.49 13.29 55.43 0.74 -24.76 16 15 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.09 1.67 5.30 -3.82 -0.02 1.65 16 20 C -0.18 -2.93 3.99 -90.62 -0.36 -3.29 16 21 C -0.19 -2.60 10.01 -26.69 -0.27 -2.86 16 22 C -0.17 -2.52 10.26 -26.69 -0.27 -2.79 16 23 N -0.47 -8.35 11.55 -9.87 -0.11 -8.46 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.11 1.85 7.82 -51.93 -0.41 1.45 16 32 H 0.07 1.07 6.53 -51.93 -0.34 0.73 16 33 H 0.03 0.89 7.87 -51.93 -0.41 0.48 16 34 H 0.01 0.12 6.10 -51.93 -0.32 -0.19 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.09 1.91 6.73 -51.93 -0.35 1.56 16 37 H 0.05 0.91 7.10 -51.94 -0.37 0.54 16 38 H 0.11 2.04 6.27 -51.93 -0.33 1.72 16 39 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -29.01 346.10 -8.51 -37.52 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.67 Total: 0.78 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.13 Total: -10.16 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.11 Total: -50.79 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: 0.20 Total: 1.33 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.01 -8.51 -37.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.211 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds