Wall clock time and date at job start Tue Mar 31 2020 01:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47155 * 2 1 4 4 C 1.50699 * 109.47119 * 119.99952 * 2 1 3 5 5 N 1.30282 * 126.27968 * 299.97480 * 4 2 1 6 6 N 1.28665 * 109.37707 * 179.97438 * 5 4 2 7 7 C 1.30269 * 109.38653 * 0.02562 * 6 5 4 8 8 C 1.50702 * 126.28689 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47089 * 89.59477 * 8 7 6 10 10 C 1.46898 * 110.99974 * 163.84323 * 9 8 7 11 11 C 1.50698 * 109.46998 * 189.99923 * 10 9 8 12 12 H 1.07997 * 120.00298 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99715 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00421 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99745 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47213 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47269 * 120.00084 * 15 13 11 18 18 H 1.48502 * 109.47423 * 239.99928 * 15 13 11 19 19 C 1.46904 * 110.99939 * 287.79661 * 9 8 7 20 20 C 1.53003 * 109.47058 * 293.35479 * 19 9 8 21 21 C 1.53001 * 117.50174 * 244.28346 * 20 19 9 22 22 C 1.52997 * 117.49806 * 175.62181 * 20 19 9 23 23 O 1.34360 * 126.28630 * 120.26031 * 4 2 1 24 24 H 1.08999 * 109.47230 * 299.99705 * 1 2 3 25 25 H 1.08995 * 109.47167 * 60.00539 * 1 2 3 26 26 H 1.09000 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47180 * 239.99613 * 2 1 3 28 28 H 1.09004 * 109.46551 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46449 * 299.99564 * 3 2 1 30 30 H 1.08992 * 109.47427 * 59.99834 * 3 2 1 31 31 H 1.08998 * 109.47158 * 329.59815 * 8 7 6 32 32 H 1.09000 * 109.47436 * 209.59296 * 8 7 6 33 33 H 1.09002 * 109.47066 * 69.99736 * 10 9 8 34 34 H 1.08995 * 109.47166 * 309.99897 * 10 9 8 35 35 H 0.96992 * 119.99929 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.47049 * 53.35238 * 19 9 8 37 37 H 1.08994 * 109.46834 * 173.35715 * 19 9 8 38 38 H 1.09005 * 115.54962 * 29.95522 * 20 19 9 39 39 H 1.08999 * 117.49410 * 359.97438 * 21 20 19 40 40 H 1.08997 * 117.50362 * 145.02012 * 21 20 19 41 41 H 1.09006 * 117.49516 * 214.97744 * 22 20 19 42 42 H 1.09000 * 117.50060 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7946 -0.3734 2.4663 6 7 2.3807 -1.2035 3.2555 7 6 3.0127 -2.0980 2.5502 8 6 3.8251 -3.2474 3.0886 9 7 2.9560 -4.4174 3.2729 10 6 3.7497 -5.6443 3.4232 11 6 2.8381 -6.8428 3.3634 12 1 1.7753 -6.7066 3.2277 13 6 3.3608 -8.1131 3.4819 14 7 4.6549 -8.2790 3.6477 15 14 2.2307 -9.5987 3.4085 16 1 0.8294 -9.1457 3.2177 17 1 2.6286 -10.4676 2.2719 18 1 2.3357 -10.3638 4.6769 19 6 2.0556 -4.2291 4.4183 20 6 2.8746 -4.1931 5.7102 21 6 2.6420 -5.3137 6.7256 22 6 2.1268 -3.9011 7.0127 23 8 2.8119 -1.8044 1.2544 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 4.2630 -2.9657 4.0462 32 1 4.6196 -3.4925 2.3837 33 1 4.2657 -5.6278 4.3832 34 1 4.4820 -5.7043 2.6181 35 1 5.0226 -9.1726 3.7306 36 1 1.5147 -3.2896 4.3047 37 1 1.3452 -5.0546 4.4614 38 1 3.8882 -3.8038 5.6136 39 1 1.9052 -6.0763 6.4734 40 1 3.5023 -5.6615 7.2973 41 1 2.6487 -3.3201 7.7732 42 1 1.0514 -3.7351 6.9493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081044728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:33 Heat of formation + Delta-G solvation = 59.281153 kcal Electronic energy + Delta-G solvation = -22120.207064 eV Core-core repulsion = 18910.140619 eV Total energy + Delta-G solvation = -3210.066445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.94859 -38.17966 -36.11881 -35.82750 -35.16350 -32.71475 -30.72990 -27.61178 -27.47023 -27.13289 -24.56464 -24.04249 -22.12844 -21.76524 -21.61283 -20.83572 -19.29144 -17.10394 -17.02227 -16.34510 -15.72365 -15.13474 -15.00755 -14.77936 -14.35834 -14.20298 -13.89328 -13.40159 -13.05728 -12.48849 -12.28501 -12.21921 -12.08788 -11.99287 -11.63855 -11.55841 -11.50704 -11.37658 -11.17652 -11.12397 -10.94985 -10.77681 -10.60542 -10.56284 -10.04204 -9.83047 -9.36067 -9.22373 -9.17371 -8.47805 -7.46235 -6.06937 -4.07182 1.40688 2.46035 2.63171 3.28273 3.36444 3.40790 3.93555 4.35314 4.41174 4.46089 4.71442 4.73808 4.90085 4.99117 5.25998 5.28016 5.30248 5.35117 5.45279 5.50639 5.54269 5.55286 5.59696 5.66322 5.77179 5.79124 5.94358 5.97457 6.03628 6.06313 6.11727 6.26255 6.42487 6.51915 6.69794 6.89125 7.10676 7.27265 7.68971 7.91895 8.05265 8.40940 8.57877 8.98390 9.56354 11.04057 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.004453 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.488347 B = 6286.806896 C = 7045.906628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.006 3.994 3 C -0.144 4.144 4 C 0.150 3.850 5 N -0.287 5.287 6 N -0.292 5.292 7 C 0.197 3.803 8 C 0.136 3.864 9 N -0.528 5.528 10 C 0.194 3.806 11 C -0.501 4.501 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.897 5.897 15 Si 0.894 3.106 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.092 3.908 20 C -0.169 4.169 21 C -0.159 4.159 22 C -0.187 4.187 23 O -0.218 6.218 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.009 0.991 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 14.990 -4.193 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 C -0.202 4.202 4 C -0.062 4.062 5 N -0.134 5.134 6 N -0.139 5.139 7 C -0.015 4.015 8 C 0.006 3.994 9 N -0.252 5.252 10 C 0.070 3.930 11 C -0.539 4.539 12 H 0.080 0.920 13 C -0.143 4.143 14 N -0.536 5.536 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.037 4.037 20 C -0.188 4.188 21 C -0.196 4.196 22 C -0.225 4.225 23 O -0.096 6.096 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.027 0.973 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.560 15.419 -3.587 16.475 hybrid contribution 0.547 -1.568 -0.267 1.682 sum -4.012 13.851 -3.854 14.927 Atomic orbital electron populations 1.21856 0.91966 1.03125 1.03307 1.19655 0.96895 0.95130 0.89721 1.21856 1.01509 0.93407 1.03381 1.27882 0.93610 0.86500 0.98215 1.74255 1.19155 1.21485 0.98459 1.74408 1.10200 1.02674 1.26650 1.28295 0.98232 0.98453 0.76499 1.20593 0.92546 0.86152 1.00125 1.62351 1.20844 1.01602 1.40438 1.19833 0.92720 0.84020 0.96453 1.21054 0.94182 0.89755 1.48948 0.91991 1.24912 0.95028 0.98883 0.95431 1.69948 1.11094 1.22375 1.50225 0.86499 0.81004 0.82731 0.77551 1.19719 1.21056 1.21076 1.21766 0.95086 1.01303 0.85525 1.22803 1.00244 1.03781 0.92011 1.22872 1.02972 0.91269 1.02443 1.22893 0.99943 1.00124 0.99548 1.84815 1.54003 1.39273 1.31549 0.91136 0.90839 0.91953 0.88279 0.92230 0.90822 0.91130 0.90127 0.88100 0.97324 0.95200 0.92977 0.91911 0.89709 0.88792 0.88511 0.89649 0.89772 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.18 37.16 0.34 -0.94 16 2 C 0.01 0.06 3.39 -91.77 -0.31 -0.25 16 3 C -0.14 -1.16 9.18 37.16 0.34 -0.82 16 4 C 0.15 2.22 6.99 -12.94 -0.09 2.13 16 5 N -0.29 -4.87 12.22 32.55 0.40 -4.47 16 6 N -0.29 -5.36 11.45 32.55 0.37 -4.99 16 7 C 0.20 3.49 7.34 -12.94 -0.09 3.40 16 8 C 0.14 2.40 5.48 -4.97 -0.03 2.38 16 9 N -0.53 -11.00 4.65 -237.51 -1.10 -12.10 16 10 C 0.19 4.71 4.50 -4.98 -0.02 4.68 16 11 C -0.50 -13.39 8.55 -34.44 -0.29 -13.68 16 12 H 0.06 1.68 7.10 -52.49 -0.37 1.30 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -25.58 13.29 55.43 0.74 -24.84 16 15 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 C 0.09 1.80 5.28 -3.82 -0.02 1.78 16 20 C -0.17 -3.06 3.93 -90.62 -0.36 -3.42 16 21 C -0.16 -2.84 10.18 -26.69 -0.27 -3.11 16 22 C -0.19 -2.95 10.25 -26.69 -0.27 -3.23 16 23 O -0.22 -3.70 10.87 5.39 0.06 -3.64 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.34 6.09 -51.93 -0.32 1.03 16 32 H 0.10 1.67 7.80 -51.93 -0.41 1.26 16 33 H 0.01 0.23 6.70 -51.93 -0.35 -0.12 16 34 H 0.03 0.78 7.86 -51.93 -0.41 0.37 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 36 H 0.06 1.22 6.74 -51.93 -0.35 0.87 16 37 H 0.08 1.80 6.67 -51.93 -0.35 1.45 16 38 H 0.09 1.71 6.28 -51.93 -0.33 1.38 16 39 H 0.10 1.83 8.03 -51.93 -0.42 1.41 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -30.06 346.04 -7.17 -37.23 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.65 Total: 1.02 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.18 Total: -9.57 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.40 Total: -46.40 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: 0.06 Total: -3.64 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.06 -7.17 -37.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081044728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.516 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds