Wall clock time and date at job start Tue Mar 31 2020 01:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47155 * 2 1 4 4 C 1.50699 * 109.47119 * 119.99952 * 2 1 3 5 5 N 1.30282 * 126.27968 * 299.97480 * 4 2 1 6 6 N 1.28665 * 109.37707 * 179.97438 * 5 4 2 7 7 C 1.30269 * 109.38653 * 0.02562 * 6 5 4 8 8 C 1.50702 * 126.28689 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47089 * 89.59477 * 8 7 6 10 10 C 1.46898 * 110.99974 * 163.84323 * 9 8 7 11 11 C 1.50698 * 109.46998 * 189.99923 * 10 9 8 12 12 H 1.07997 * 120.00298 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99715 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00421 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99745 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47213 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47269 * 120.00084 * 15 13 11 18 18 H 1.48502 * 109.47423 * 239.99928 * 15 13 11 19 19 C 1.46904 * 110.99939 * 287.79661 * 9 8 7 20 20 C 1.53003 * 109.47058 * 293.35479 * 19 9 8 21 21 C 1.53001 * 117.50174 * 244.28346 * 20 19 9 22 22 C 1.52997 * 117.49806 * 175.62181 * 20 19 9 23 23 O 1.34360 * 126.28630 * 120.26031 * 4 2 1 24 24 H 1.08999 * 109.47230 * 299.99705 * 1 2 3 25 25 H 1.08995 * 109.47167 * 60.00539 * 1 2 3 26 26 H 1.09000 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47180 * 239.99613 * 2 1 3 28 28 H 1.09004 * 109.46551 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46449 * 299.99564 * 3 2 1 30 30 H 1.08992 * 109.47427 * 59.99834 * 3 2 1 31 31 H 1.08998 * 109.47158 * 329.59815 * 8 7 6 32 32 H 1.09000 * 109.47436 * 209.59296 * 8 7 6 33 33 H 1.09002 * 109.47066 * 69.99736 * 10 9 8 34 34 H 1.08995 * 109.47166 * 309.99897 * 10 9 8 35 35 H 0.96992 * 119.99929 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.47049 * 53.35238 * 19 9 8 37 37 H 1.08994 * 109.46834 * 173.35715 * 19 9 8 38 38 H 1.09005 * 115.54962 * 29.95522 * 20 19 9 39 39 H 1.08999 * 117.49410 * 359.97438 * 21 20 19 40 40 H 1.08997 * 117.50362 * 145.02012 * 21 20 19 41 41 H 1.09006 * 117.49516 * 214.97744 * 22 20 19 42 42 H 1.09000 * 117.50060 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7946 -0.3734 2.4663 6 7 2.3807 -1.2035 3.2555 7 6 3.0127 -2.0980 2.5502 8 6 3.8251 -3.2474 3.0886 9 7 2.9560 -4.4174 3.2729 10 6 3.7497 -5.6443 3.4232 11 6 2.8381 -6.8428 3.3634 12 1 1.7753 -6.7066 3.2277 13 6 3.3608 -8.1131 3.4819 14 7 4.6549 -8.2790 3.6477 15 14 2.2307 -9.5987 3.4085 16 1 0.8294 -9.1457 3.2177 17 1 2.6286 -10.4676 2.2719 18 1 2.3357 -10.3638 4.6769 19 6 2.0556 -4.2291 4.4183 20 6 2.8746 -4.1931 5.7102 21 6 2.6420 -5.3137 6.7256 22 6 2.1268 -3.9011 7.0127 23 8 2.8119 -1.8044 1.2544 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 4.2630 -2.9657 4.0462 32 1 4.6196 -3.4925 2.3837 33 1 4.2657 -5.6278 4.3832 34 1 4.4820 -5.7043 2.6181 35 1 5.0226 -9.1726 3.7306 36 1 1.5147 -3.2896 4.3047 37 1 1.3452 -5.0546 4.4614 38 1 3.8882 -3.8038 5.6136 39 1 1.9052 -6.0763 6.4734 40 1 3.5023 -5.6615 7.2973 41 1 2.6487 -3.3201 7.7732 42 1 1.0514 -3.7351 6.9493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081044728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:32 Heat of formation + Delta-G solvation = 37.581625 kcal Electronic energy + Delta-G solvation = -22121.148027 eV Core-core repulsion = 18910.140619 eV Total energy + Delta-G solvation = -3211.007407 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.25289 -39.74125 -37.22335 -37.01028 -36.56465 -34.72185 -32.15293 -29.37858 -28.66709 -28.13110 -26.21769 -25.26511 -23.71123 -23.19681 -23.11401 -21.82122 -20.86238 -18.46371 -18.42704 -18.13256 -17.21285 -16.64541 -16.28729 -16.16475 -15.95475 -15.54697 -15.17642 -14.51220 -14.21435 -14.14948 -13.68258 -13.49206 -13.20196 -13.07103 -13.05254 -12.94978 -12.76933 -12.71632 -12.64208 -12.46239 -12.31127 -12.27871 -12.27061 -11.97457 -11.72451 -11.42822 -11.13725 -10.71369 -10.57141 -10.51494 -9.15398 -8.16766 -6.23254 0.12388 1.23142 1.32660 1.40289 1.42751 1.53946 2.41742 2.75356 2.96567 3.17725 3.26139 3.45935 3.70623 3.85005 4.00671 4.05604 4.07463 4.09500 4.17649 4.26028 4.39104 4.51609 4.57052 4.65237 4.67133 4.76815 4.80958 4.87686 4.88104 4.94427 5.03361 5.08749 5.18799 5.28329 5.31396 5.32233 5.32700 5.37110 5.65592 6.02569 6.19691 6.48382 6.88554 7.26562 7.44289 8.94210 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.004453 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.488347 B = 6286.806896 C = 7045.906628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.002 3.998 3 C -0.139 4.139 4 C 0.165 3.835 5 N -0.312 5.312 6 N -0.304 5.304 7 C 0.185 3.815 8 C 0.141 3.859 9 N -0.539 5.539 10 C 0.212 3.788 11 C -0.510 4.510 12 H 0.054 0.946 13 C 0.013 3.987 14 N -0.928 5.928 15 Si 0.955 3.045 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.279 1.279 19 C 0.102 3.898 20 C -0.184 4.184 21 C -0.171 4.171 22 C -0.156 4.156 23 O -0.229 6.229 24 H 0.059 0.941 25 H 0.107 0.893 26 H 0.048 0.952 27 H 0.118 0.882 28 H 0.055 0.945 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.109 0.891 33 H -0.005 1.005 34 H 0.009 0.991 35 H 0.263 0.737 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 16.143 -4.891 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.018 4.018 3 C -0.196 4.196 4 C -0.047 4.047 5 N -0.158 5.158 6 N -0.151 5.151 7 C -0.027 4.027 8 C 0.011 3.989 9 N -0.263 5.263 10 C 0.087 3.913 11 C -0.549 4.549 12 H 0.072 0.928 13 C -0.186 4.186 14 N -0.568 5.568 15 Si 0.781 3.219 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.205 1.205 19 C -0.027 4.027 20 C -0.204 4.204 21 C -0.208 4.208 22 C -0.194 4.194 23 O -0.107 6.107 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.068 0.932 27 H 0.137 0.863 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.012 0.988 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.521 16.601 -4.279 18.010 hybrid contribution 0.806 -1.824 -0.117 1.997 sum -4.714 14.777 -4.396 16.122 Atomic orbital electron populations 1.21872 0.90876 1.02647 1.04497 1.20123 0.97640 0.95922 0.88116 1.21863 1.01299 0.91990 1.04475 1.29019 0.91343 0.85137 0.99197 1.74216 1.20270 1.21950 0.99319 1.74345 1.10326 1.03010 1.27466 1.28083 0.98956 0.98679 0.76945 1.20543 0.92266 0.85071 1.00999 1.62164 1.21110 1.01707 1.41302 1.19436 0.92012 0.85123 0.94720 1.21281 0.94074 0.90942 1.48576 0.92806 1.25643 0.96294 1.01515 0.95110 1.70046 1.12583 1.23071 1.51142 0.85544 0.79267 0.79422 0.77657 1.19338 1.20630 1.20525 1.21594 0.94650 1.00351 0.86060 1.22740 1.00486 1.04906 0.92251 1.22828 1.03042 0.91997 1.02959 1.22970 1.00471 0.98013 0.97914 1.84826 1.54589 1.40146 1.31179 0.92197 0.87404 0.93246 0.86350 0.92579 0.87533 0.92213 0.89046 0.87313 0.98761 0.97243 0.92816 0.91654 0.91797 0.88842 0.90079 0.89538 0.87491 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.18 71.98 0.66 -1.51 16 2 C 0.00 0.03 3.39 -11.54 -0.04 0.00 16 3 C -0.14 -1.88 9.18 71.98 0.66 -1.22 16 4 C 0.16 4.71 6.99 88.34 0.62 5.33 16 5 N -0.31 -10.42 12.22 -165.50 -2.02 -12.44 16 6 N -0.30 -11.10 11.45 -165.50 -1.89 -12.99 16 7 C 0.19 6.57 7.34 88.34 0.65 7.22 16 8 C 0.14 5.01 5.48 85.56 0.47 5.48 16 9 N -0.54 -22.81 4.65 -905.36 -4.21 -27.02 16 10 C 0.21 10.57 4.50 85.56 0.38 10.96 16 11 C -0.51 -27.76 8.55 25.60 0.22 -27.54 16 12 H 0.05 2.96 7.10 -2.91 -0.02 2.94 16 13 C 0.01 0.71 5.46 84.66 0.46 1.17 16 14 N -0.93 -53.54 13.29 21.45 0.28 -53.25 16 15 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 C 0.10 4.03 5.28 86.30 0.46 4.49 16 20 C -0.18 -6.65 3.93 -10.79 -0.04 -6.69 16 21 C -0.17 -6.11 10.18 30.62 0.31 -5.80 16 22 C -0.16 -4.67 10.25 30.62 0.31 -4.35 16 23 O -0.23 -7.64 10.87 -3.63 -0.04 -7.68 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 3.05 6.09 -2.39 -0.01 3.03 16 32 H 0.11 3.64 7.80 -2.39 -0.02 3.62 16 33 H -0.01 -0.28 6.70 -2.39 -0.02 -0.30 16 34 H 0.01 0.51 7.86 -2.39 -0.02 0.49 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.07 2.54 6.74 -2.39 -0.02 2.53 16 37 H 0.06 2.77 6.67 -2.39 -0.02 2.76 16 38 H 0.09 3.38 6.28 -2.38 -0.01 3.37 16 39 H 0.08 3.13 8.03 -2.39 -0.02 3.11 16 40 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.11 2.74 8.14 -2.38 -0.02 2.73 16 42 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -64.85 346.04 0.27 -64.58 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 1.00 Total: 15.66 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.12 Total: -12.48 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -7.84 Total: -105.71 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.04 Total: -7.68 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -64.85 0.27 -64.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081044728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.157 kcal (2) G-P(sol) polarization free energy of solvation -64.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds