Wall clock time and date at job start Tue Mar 31 2020 00:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47231 * 2 1 4 4 C 1.50696 * 109.46980 * 120.00208 * 2 1 3 5 5 C 1.35348 * 126.38126 * 324.68651 * 4 2 1 6 6 C 1.41550 * 105.50627 * 179.86966 * 5 4 2 7 7 C 1.47601 * 126.52809 * 180.15283 * 6 5 4 8 8 O 1.21613 * 120.00040 * 353.86018 * 7 6 5 9 9 N 1.34778 * 120.00494 * 173.86042 * 7 6 5 10 10 C 1.36904 * 120.00130 * 184.94642 * 9 7 6 11 11 H 1.08005 * 119.99951 * 224.04593 * 10 9 7 12 12 C 1.39023 * 120.00218 * 44.05407 * 10 9 7 13 13 N 1.31380 * 119.99997 * 6.65553 * 12 10 9 14 14 Si 1.86795 * 120.00103 * 186.65918 * 12 10 9 15 15 H 1.48503 * 109.47296 * 59.99728 * 14 12 10 16 16 H 1.48496 * 109.47305 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47320 * 299.99766 * 14 12 10 18 18 C 1.46497 * 119.99364 * 4.94971 * 9 7 6 19 19 C 1.53005 * 109.47117 * 113.73055 * 18 9 7 20 20 C 1.53001 * 109.46958 * 233.72821 * 18 9 7 21 21 N 1.31861 * 106.94714 * 0.39485 * 6 5 4 22 22 N 1.28464 * 110.06354 * 359.75518 * 21 6 5 23 23 C 1.46501 * 124.87896 * 180.02562 * 22 21 6 24 24 H 1.09001 * 109.46733 * 299.99954 * 1 2 3 25 25 H 1.09000 * 109.47126 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46918 * 59.99852 * 1 2 3 27 27 H 1.09001 * 109.46733 * 240.00046 * 2 1 3 28 28 H 1.09004 * 109.47312 * 59.99814 * 3 2 1 29 29 H 1.08997 * 109.47354 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47291 * 299.99920 * 3 2 1 31 31 H 1.07998 * 127.24863 * 0.02562 * 5 4 2 32 32 H 0.96996 * 119.99926 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.47507 * 353.72840 * 18 9 7 34 34 H 1.08998 * 109.46964 * 65.07696 * 19 18 9 35 35 H 1.09007 * 109.46955 * 185.07369 * 19 18 9 36 36 H 1.09000 * 109.47052 * 305.07818 * 19 18 9 37 37 H 1.08996 * 109.47126 * 64.64851 * 20 18 9 38 38 H 1.09001 * 109.47545 * 184.65051 * 20 18 9 39 39 H 1.09002 * 109.47369 * 304.64909 * 20 18 9 40 40 H 1.08995 * 109.47776 * 269.95816 * 23 22 21 41 41 H 1.09003 * 109.47078 * 29.95735 * 23 22 21 42 42 H 1.08999 * 109.47198 * 149.95919 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.4616 -0.6916 2.4575 6 6 2.2888 -1.5015 3.2721 7 6 2.0891 -1.8014 4.7034 8 8 1.2018 -1.2465 5.3229 9 7 2.8901 -2.6901 5.3240 10 6 2.6426 -3.0442 6.6231 11 1 3.4570 -3.1094 7.3296 12 6 1.3431 -3.3199 7.0330 13 7 0.3721 -3.3691 6.1493 14 14 0.9776 -3.6205 8.8400 15 1 1.3550 -2.4195 9.6278 16 1 -0.4723 -3.8901 9.0136 17 1 1.7594 -4.7900 9.3154 18 6 4.0256 -3.2771 4.6083 19 6 5.3321 -2.8023 5.2477 20 6 3.9444 -4.8029 4.6870 21 7 3.2746 -1.9329 2.5100 22 7 3.1390 -1.4797 1.3156 23 6 4.0532 -1.7581 0.2051 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 0.5628 -0.1706 2.7525 32 1 -0.5346 -3.5612 6.4353 33 1 3.9977 -2.9651 3.5643 34 1 5.4013 -3.1905 6.2639 35 1 6.1764 -3.1655 4.6617 36 1 5.3492 -1.7127 5.2731 37 1 3.0549 -5.1471 4.1593 38 1 4.8312 -5.2383 4.2265 39 1 3.8891 -5.1105 5.7313 40 1 4.8358 -0.9998 0.1798 41 1 4.5041 -2.7408 0.3433 42 1 3.5001 -1.7408 -0.7339 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096467141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:31 Heat of formation + Delta-G solvation = 60.608685 kcal Electronic energy + Delta-G solvation = -23069.347170 eV Core-core repulsion = 19859.338291 eV Total energy + Delta-G solvation = -3210.008879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.08915 -38.02184 -35.61988 -34.86755 -33.01732 -32.03056 -29.74120 -29.18463 -27.19009 -27.10583 -26.19632 -24.81244 -22.63671 -21.93491 -20.22586 -19.45183 -18.86161 -16.78441 -15.91171 -15.80434 -15.46043 -14.66513 -14.40461 -13.85187 -13.57774 -13.44544 -13.35462 -13.08342 -12.94801 -12.63926 -12.51070 -12.26449 -12.14146 -11.75670 -11.49993 -11.43452 -11.28081 -11.17897 -10.91716 -10.82490 -10.75058 -10.70956 -10.47514 -10.21639 -10.05255 -8.80228 -8.63980 -8.38079 -8.26476 -8.00827 -6.87951 -5.91043 -3.70974 2.37891 2.94832 2.98361 3.39758 3.44369 3.46235 4.39883 4.59042 4.73628 4.81980 5.02658 5.07142 5.18880 5.19283 5.32843 5.45621 5.49857 5.57391 5.62926 5.71817 5.82442 5.85936 6.01587 6.06772 6.19606 6.22625 6.25747 6.35476 6.43207 6.57827 6.62233 6.76241 6.78200 6.79623 7.11374 7.24285 7.31467 7.64359 7.76632 8.45373 8.68958 9.25200 9.41092 9.83981 10.55066 11.14723 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.021633 B = 0.005850 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.983297 B = 4785.326298 C = 5643.722748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.020 4.020 3 C -0.142 4.142 4 C 0.006 3.994 5 C -0.184 4.184 6 C 0.036 3.964 7 C 0.544 3.456 8 O -0.524 6.524 9 N -0.434 5.434 10 C -0.326 4.326 11 H 0.077 0.923 12 C 0.056 3.944 13 N -0.827 5.827 14 Si 0.912 3.088 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.084 3.916 19 C -0.146 4.146 20 C -0.139 4.139 21 N -0.284 5.284 22 N -0.304 5.304 23 C 0.090 3.910 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.152 0.848 32 H 0.262 0.738 33 H 0.132 0.868 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 3.965 -15.072 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.040 4.040 3 C -0.200 4.200 4 C -0.118 4.118 5 C -0.212 4.212 6 C -0.125 4.125 7 C 0.330 3.670 8 O -0.400 6.400 9 N -0.156 5.156 10 C -0.454 4.454 11 H 0.095 0.905 12 C -0.154 4.154 13 N -0.462 5.462 14 Si 0.740 3.260 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.204 1.204 18 C -0.021 4.021 19 C -0.204 4.204 20 C -0.197 4.197 21 N -0.116 5.116 22 N -0.089 5.089 23 C -0.051 4.051 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.169 0.831 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.055 3.540 -14.862 16.434 hybrid contribution -0.856 0.078 0.828 1.194 sum 5.199 3.618 -14.034 15.398 Atomic orbital electron populations 1.21814 0.93411 1.02551 1.02233 1.19576 0.96530 0.95138 0.92723 1.21833 1.00862 0.94988 1.02311 1.21157 0.91780 1.01156 0.97725 1.21398 1.03116 1.05505 0.91160 1.22984 0.93185 0.99563 0.96762 1.16720 0.85638 0.82116 0.82546 1.90598 1.33133 1.51565 1.64681 1.43121 1.25269 1.35739 1.11447 1.18886 0.93455 1.47824 0.85248 0.90506 1.25328 0.96235 0.95552 0.98273 1.69879 1.00456 1.42096 1.33748 0.86271 0.77153 0.78414 0.84169 1.20128 1.21244 1.20382 1.22108 0.86967 0.93085 0.99962 1.22004 0.97188 1.00507 1.00707 1.21883 0.99210 0.96387 1.02218 1.73254 1.25038 1.22264 0.91090 1.45468 1.19340 1.35888 1.08253 1.21943 0.92923 1.03587 0.86629 0.91648 0.92208 0.92307 0.90817 0.91823 0.92917 0.92214 0.83080 0.92773 0.85212 0.93015 0.93810 0.93634 0.93595 0.94416 0.92054 0.90601 0.89046 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.79 37.16 0.33 -1.21 16 2 C -0.02 -0.22 3.09 -91.77 -0.28 -0.50 16 3 C -0.14 -1.40 9.17 37.15 0.34 -1.06 16 4 C 0.01 0.10 5.83 -82.21 -0.48 -0.38 16 5 C -0.18 -3.72 9.97 -39.35 -0.39 -4.12 16 6 C 0.04 0.85 6.89 -82.77 -0.57 0.28 16 7 C 0.54 15.39 6.78 -12.44 -0.08 15.31 16 8 O -0.52 -16.66 14.51 5.27 0.08 -16.58 16 9 N -0.43 -11.78 2.46 -108.87 -0.27 -12.04 16 10 C -0.33 -9.33 7.69 -15.00 -0.12 -9.45 16 11 H 0.08 2.12 7.24 -52.48 -0.38 1.74 16 12 C 0.06 1.63 4.75 -17.45 -0.08 1.54 16 13 N -0.83 -25.53 11.03 55.50 0.61 -24.91 16 14 Si 0.91 22.44 29.56 -169.99 -5.02 17.42 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.08 1.89 3.13 -67.93 -0.21 1.68 16 19 C -0.15 -2.87 9.18 37.16 0.34 -2.53 16 20 C -0.14 -2.93 9.15 37.16 0.34 -2.59 16 21 N -0.28 -5.75 8.27 33.41 0.28 -5.48 16 22 N -0.30 -4.88 3.70 -63.85 -0.24 -5.11 16 23 C 0.09 0.91 11.11 59.85 0.66 1.58 16 24 H 0.06 0.77 7.35 -51.93 -0.38 0.39 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.68 6.86 -51.93 -0.36 0.32 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.15 3.03 7.48 -52.49 -0.39 2.64 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.13 2.84 3.57 -133.36 -0.48 2.37 16 34 H 0.05 1.03 7.49 -51.93 -0.39 0.64 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 1.36 7.37 -51.93 -0.38 0.98 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.63 6.88 -51.93 -0.36 0.27 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -35.84 338.50 -6.57 -42.41 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.90 Total: 0.65 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.21 Total: -1.44 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.38 Total: -47.55 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.08 Total: -16.58 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.84 -6.57 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096467141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.022 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds