Wall clock time and date at job start Tue Mar 31 2020 00:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47231 * 2 1 4 4 C 1.50696 * 109.46980 * 120.00208 * 2 1 3 5 5 C 1.35348 * 126.38126 * 324.68651 * 4 2 1 6 6 C 1.41550 * 105.50627 * 179.86966 * 5 4 2 7 7 C 1.47601 * 126.52809 * 180.15283 * 6 5 4 8 8 O 1.21613 * 120.00040 * 353.86018 * 7 6 5 9 9 N 1.34778 * 120.00494 * 173.86042 * 7 6 5 10 10 C 1.36904 * 120.00130 * 184.94642 * 9 7 6 11 11 H 1.08005 * 119.99951 * 224.04593 * 10 9 7 12 12 C 1.39023 * 120.00218 * 44.05407 * 10 9 7 13 13 N 1.31380 * 119.99997 * 6.65553 * 12 10 9 14 14 Si 1.86795 * 120.00103 * 186.65918 * 12 10 9 15 15 H 1.48503 * 109.47296 * 59.99728 * 14 12 10 16 16 H 1.48496 * 109.47305 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47320 * 299.99766 * 14 12 10 18 18 C 1.46497 * 119.99364 * 4.94971 * 9 7 6 19 19 C 1.53005 * 109.47117 * 113.73055 * 18 9 7 20 20 C 1.53001 * 109.46958 * 233.72821 * 18 9 7 21 21 N 1.31861 * 106.94714 * 0.39485 * 6 5 4 22 22 N 1.28464 * 110.06354 * 359.75518 * 21 6 5 23 23 C 1.46501 * 124.87896 * 180.02562 * 22 21 6 24 24 H 1.09001 * 109.46733 * 299.99954 * 1 2 3 25 25 H 1.09000 * 109.47126 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46918 * 59.99852 * 1 2 3 27 27 H 1.09001 * 109.46733 * 240.00046 * 2 1 3 28 28 H 1.09004 * 109.47312 * 59.99814 * 3 2 1 29 29 H 1.08997 * 109.47354 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47291 * 299.99920 * 3 2 1 31 31 H 1.07998 * 127.24863 * 0.02562 * 5 4 2 32 32 H 0.96996 * 119.99926 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.47507 * 353.72840 * 18 9 7 34 34 H 1.08998 * 109.46964 * 65.07696 * 19 18 9 35 35 H 1.09007 * 109.46955 * 185.07369 * 19 18 9 36 36 H 1.09000 * 109.47052 * 305.07818 * 19 18 9 37 37 H 1.08996 * 109.47126 * 64.64851 * 20 18 9 38 38 H 1.09001 * 109.47545 * 184.65051 * 20 18 9 39 39 H 1.09002 * 109.47369 * 304.64909 * 20 18 9 40 40 H 1.08995 * 109.47776 * 269.95816 * 23 22 21 41 41 H 1.09003 * 109.47078 * 29.95735 * 23 22 21 42 42 H 1.08999 * 109.47198 * 149.95919 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.4616 -0.6916 2.4575 6 6 2.2888 -1.5015 3.2721 7 6 2.0891 -1.8014 4.7034 8 8 1.2018 -1.2465 5.3229 9 7 2.8901 -2.6901 5.3240 10 6 2.6426 -3.0442 6.6231 11 1 3.4570 -3.1094 7.3296 12 6 1.3431 -3.3199 7.0330 13 7 0.3721 -3.3691 6.1493 14 14 0.9776 -3.6205 8.8400 15 1 1.3550 -2.4195 9.6278 16 1 -0.4723 -3.8901 9.0136 17 1 1.7594 -4.7900 9.3154 18 6 4.0256 -3.2771 4.6083 19 6 5.3321 -2.8023 5.2477 20 6 3.9444 -4.8029 4.6870 21 7 3.2746 -1.9329 2.5100 22 7 3.1390 -1.4797 1.3156 23 6 4.0532 -1.7581 0.2051 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 0.5628 -0.1706 2.7525 32 1 -0.5346 -3.5612 6.4353 33 1 3.9977 -2.9651 3.5643 34 1 5.4013 -3.1905 6.2639 35 1 6.1764 -3.1655 4.6617 36 1 5.3492 -1.7127 5.2731 37 1 3.0549 -5.1471 4.1593 38 1 4.8312 -5.2383 4.2265 39 1 3.8891 -5.1105 5.7313 40 1 4.8358 -0.9998 0.1798 41 1 4.5041 -2.7408 0.3433 42 1 3.5001 -1.7408 -0.7339 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096467141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:30 Heat of formation + Delta-G solvation = 36.772369 kcal Electronic energy + Delta-G solvation = -23070.380791 eV Core-core repulsion = 19859.338291 eV Total energy + Delta-G solvation = -3211.042499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.54606 -40.01915 -36.91719 -36.59020 -34.57199 -33.91155 -31.68358 -30.58479 -28.54886 -27.99766 -27.85540 -26.68283 -24.03036 -23.46329 -21.90828 -21.10760 -20.40367 -18.34289 -17.54893 -17.39711 -17.02913 -16.63546 -15.75471 -15.42245 -15.22532 -14.92022 -14.71946 -14.60453 -14.36850 -13.92583 -13.75919 -13.52309 -13.35540 -13.26120 -13.04741 -12.94071 -12.76707 -12.61741 -12.56304 -12.55885 -12.23585 -12.09708 -12.03927 -11.95150 -11.71937 -10.80022 -10.48332 -10.16684 -9.80763 -9.76902 -9.01707 -8.10189 -5.95339 0.89195 1.33971 1.39696 1.47323 1.50774 1.76094 2.37357 2.97767 3.21628 3.37775 3.56761 3.65238 3.96622 4.20945 4.28363 4.32523 4.40993 4.49656 4.52290 4.61154 4.72650 4.77349 4.80873 4.84683 4.87992 4.90699 5.01590 5.03862 5.08823 5.10579 5.13661 5.18586 5.40468 5.43283 5.46729 5.49936 5.60890 5.74980 6.15350 6.28899 7.04917 7.16574 7.33794 7.73727 8.44575 8.95997 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.021633 B = 0.005850 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.983297 B = 4785.326298 C = 5643.722748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.016 4.016 3 C -0.139 4.139 4 C 0.037 3.963 5 C -0.217 4.217 6 C -0.012 4.012 7 C 0.530 3.470 8 O -0.581 6.581 9 N -0.447 5.447 10 C -0.341 4.341 11 H 0.081 0.919 12 C 0.000 4.000 13 N -0.868 5.868 14 Si 0.979 3.021 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.255 1.255 18 C 0.072 3.928 19 C -0.136 4.136 20 C -0.129 4.129 21 N -0.284 5.284 22 N -0.288 5.288 23 C 0.072 3.928 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.257 0.743 33 H 0.142 0.858 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.032 0.968 37 H 0.020 0.980 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 3.894 -18.101 20.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 C -0.197 4.197 4 C -0.090 4.090 5 C -0.246 4.246 6 C -0.170 4.170 7 C 0.318 3.682 8 O -0.461 6.461 9 N -0.168 5.168 10 C -0.469 4.469 11 H 0.099 0.901 12 C -0.205 4.205 13 N -0.504 5.504 14 Si 0.803 3.197 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.180 1.180 18 C -0.032 4.032 19 C -0.194 4.194 20 C -0.187 4.187 21 N -0.119 5.119 22 N -0.074 5.074 23 C -0.066 4.066 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.153 0.847 32 H 0.066 0.934 33 H 0.157 0.843 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.341 3.433 -17.902 20.046 hybrid contribution -1.427 0.153 1.550 2.112 sum 6.915 3.586 -16.352 18.112 Atomic orbital electron populations 1.21839 0.93379 1.02012 1.02921 1.19844 0.96519 0.95858 0.91374 1.21824 1.01267 0.93754 1.02848 1.21713 0.90292 0.99195 0.97779 1.21415 1.03509 1.06639 0.93015 1.22386 0.96151 1.03001 0.95484 1.17405 0.84841 0.81478 0.84521 1.90520 1.35304 1.53611 1.66691 1.43431 1.26252 1.35651 1.11438 1.19208 0.93733 1.47386 0.86591 0.90112 1.26271 0.96073 0.95335 1.02786 1.70051 1.00482 1.44077 1.35835 0.85241 0.77025 0.78797 0.78596 1.20261 1.21268 1.17953 1.22450 0.86490 0.93752 1.00517 1.21909 0.97022 0.99671 1.00786 1.21795 1.00115 0.95605 1.01163 1.72978 1.23968 1.22364 0.92571 1.46023 1.19609 1.33750 1.08047 1.22591 0.93206 1.05114 0.85682 0.93658 0.93409 0.88980 0.86975 0.93958 0.92247 0.89099 0.84656 0.93439 0.84253 0.93747 0.89697 0.94881 0.96025 0.89980 0.93764 0.87929 0.88079 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.79 71.98 0.63 -2.19 16 2 C -0.02 -0.30 3.09 -11.54 -0.04 -0.34 16 3 C -0.14 -2.25 9.17 71.98 0.66 -1.59 16 4 C 0.04 1.11 5.83 41.39 0.24 1.36 16 5 C -0.22 -9.21 9.97 22.42 0.22 -8.98 16 6 C -0.01 -0.58 6.89 42.43 0.29 -0.29 16 7 C 0.53 31.82 6.78 86.71 0.59 32.41 16 8 O -0.58 -39.75 14.51 -4.07 -0.06 -39.81 16 9 N -0.45 -25.27 2.46 -616.62 -1.52 -26.79 16 10 C -0.34 -20.28 7.69 84.09 0.65 -19.64 16 11 H 0.08 4.59 7.24 -2.91 -0.02 4.57 16 12 C 0.00 0.03 4.75 84.95 0.40 0.43 16 13 N -0.87 -56.68 11.03 21.68 0.24 -56.45 16 14 Si 0.98 47.74 29.56 68.60 2.03 49.77 16 15 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 16 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 17 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 18 C 0.07 3.25 3.13 44.99 0.14 3.39 16 19 C -0.14 -5.19 9.18 71.98 0.66 -4.53 16 20 C -0.13 -5.38 9.15 71.98 0.66 -4.72 16 21 N -0.28 -11.38 8.27 -48.20 -0.40 -11.78 16 22 N -0.29 -8.54 3.70 -355.93 -1.32 -9.85 16 23 C 0.07 1.10 11.11 127.77 1.42 2.52 16 24 H 0.04 1.07 7.35 -2.39 -0.02 1.05 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.11 1.36 6.86 -2.39 -0.02 1.34 16 28 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.14 5.96 7.48 -2.91 -0.02 5.94 16 32 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 33 H 0.14 6.05 3.57 -107.73 -0.38 5.67 16 34 H 0.04 1.73 7.49 -2.39 -0.02 1.71 16 35 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 36 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.04 1.96 7.37 -2.39 -0.02 1.95 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.12 1.01 6.88 -2.39 -0.02 0.99 16 Total: -1.00 -86.41 338.50 6.13 -80.29 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.62 Total: 16.81 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 6.53 Total: -2.18 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -3.00 Total: -104.87 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.06 Total: -39.81 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -86.41 6.13 -80.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096467141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.058 kcal (2) G-P(sol) polarization free energy of solvation -86.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds