Wall clock time and date at job start Tue Mar 31 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47273 * 2 1 4 4 C 1.53002 * 109.47551 * 120.00339 * 2 1 3 5 5 C 1.53001 * 109.47376 * 174.99549 * 4 2 1 6 6 N 1.46494 * 109.46736 * 175.39724 * 5 4 2 7 7 C 1.46502 * 120.00198 * 275.87015 * 6 5 4 8 8 C 1.50702 * 109.47453 * 270.00944 * 7 6 5 9 9 H 1.07997 * 119.99850 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00209 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00231 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99934 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47129 * 90.00126 * 12 10 8 14 14 H 1.48507 * 109.47057 * 209.99658 * 12 10 8 15 15 H 1.48497 * 109.47306 * 329.99882 * 12 10 8 16 16 C 1.34773 * 120.00188 * 95.87750 * 6 5 4 17 17 O 1.21608 * 120.00362 * 185.35779 * 16 6 5 18 18 C 1.47427 * 120.00024 * 5.35718 * 16 6 5 19 19 C 1.41289 * 126.41523 * 325.65058 * 18 16 6 20 20 N 1.30440 * 108.02745 * 180.02562 * 19 18 16 21 21 N 1.39934 * 108.89534 * 359.77820 * 20 19 18 22 22 C 1.46501 * 125.75794 * 180.23953 * 21 20 19 23 23 C 1.34262 * 108.49328 * 0.37162 * 21 20 19 24 24 H 1.08999 * 109.46819 * 299.99404 * 1 2 3 25 25 H 1.09002 * 109.47131 * 59.99877 * 1 2 3 26 26 H 1.09000 * 109.46939 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46890 * 239.99910 * 2 1 3 28 28 H 1.08999 * 109.46711 * 60.00529 * 3 2 1 29 29 H 1.09005 * 109.47060 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47142 * 300.00116 * 3 2 1 31 31 H 1.09005 * 109.47059 * 54.99918 * 4 2 1 32 32 H 1.09005 * 109.46957 * 295.00233 * 4 2 1 33 33 H 1.09000 * 109.46787 * 55.39901 * 5 4 2 34 34 H 1.08993 * 109.47459 * 295.39649 * 5 4 2 35 35 H 1.09008 * 109.46947 * 30.00130 * 7 6 5 36 36 H 1.08997 * 109.47693 * 150.00235 * 7 6 5 37 37 H 0.96995 * 120.00080 * 180.02562 * 11 10 8 38 38 H 1.08005 * 125.98656 * 359.97438 * 19 18 16 39 39 H 1.09004 * 109.47321 * 270.15366 * 22 21 20 40 40 H 1.09007 * 109.47001 * 30.14973 * 22 21 20 41 41 H 1.08999 * 109.47593 * 150.14931 * 22 21 20 42 42 H 1.07997 * 126.29539 * 179.90871 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8312 1.1878 6 7 4.0623 -1.4225 2.4324 7 6 4.2928 -0.5752 3.6051 8 6 5.7080 -0.0578 3.5808 9 1 6.3697 -0.3330 2.7729 10 6 6.1579 0.7668 4.5900 11 7 5.3520 1.1024 5.5736 12 14 7.9124 1.4075 4.5602 13 1 7.9560 2.6971 3.8251 14 1 8.3874 1.6148 5.9519 15 1 8.7884 0.4201 3.8800 16 6 4.3080 -2.7460 2.4986 17 8 4.6271 -3.2530 3.5569 18 6 4.1900 -3.5791 1.2881 19 6 3.2639 -3.4029 0.2357 20 7 3.4753 -4.3380 -0.6488 21 7 4.5344 -5.1424 -0.2136 22 6 5.0813 -6.2984 -0.9283 23 6 4.9632 -4.6778 0.9708 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6055 -1.7199 1.2951 32 1 1.7517 -0.1584 2.1370 33 1 3.9958 0.1618 1.0597 34 1 3.8502 -1.4624 0.3463 35 1 3.5985 0.2651 3.5883 36 1 4.1348 -1.1589 4.5119 37 1 5.6685 1.6828 6.2833 38 1 2.5121 -2.6299 0.1746 39 1 4.5492 -7.1994 -0.6229 40 1 4.9613 -6.1519 -2.0018 41 1 6.1401 -6.4041 -0.6922 42 1 5.7682 -5.0857 1.5641 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103440573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:35 Heat of formation + Delta-G solvation = 36.317281 kcal Electronic energy + Delta-G solvation = -22382.479134 eV Core-core repulsion = 19171.416900 eV Total energy + Delta-G solvation = -3211.062234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.21418 -38.61504 -36.74926 -34.37329 -33.40607 -32.46073 -30.13485 -29.13640 -27.57286 -26.99229 -26.42854 -23.30292 -23.20045 -21.35808 -20.88086 -19.77836 -18.71267 -16.93429 -16.36214 -15.98432 -15.50636 -15.35134 -14.95918 -14.31725 -14.20003 -14.15289 -13.69021 -13.20195 -13.03007 -12.84371 -12.71793 -12.35748 -12.17521 -12.07329 -11.98834 -11.60946 -11.23410 -11.08790 -10.86266 -10.82109 -10.74831 -10.49820 -10.45593 -10.33569 -10.07211 -9.55252 -9.38639 -8.91864 -8.40992 -8.36385 -7.52907 -5.99377 -4.03720 1.81754 2.45943 2.52345 3.32576 3.39089 3.43228 3.84591 4.14198 4.46334 4.54857 4.93967 4.97306 4.99799 5.04949 5.07331 5.12716 5.21709 5.33950 5.46188 5.51377 5.65950 5.72312 5.79255 5.83216 5.87907 5.93764 6.00228 6.12133 6.23090 6.26571 6.35801 6.55913 6.58914 6.67913 6.93154 7.18694 7.53902 7.64138 7.68077 7.98357 8.30084 8.54641 8.96579 9.21883 9.61342 11.08520 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.011791 B = 0.006332 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.132728 B = 4421.015837 C = 6137.700501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.140 4.140 5 C 0.100 3.900 6 N -0.589 5.589 7 C 0.247 3.753 8 C -0.524 4.524 9 H 0.057 0.943 10 C 0.061 3.939 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.582 3.418 17 O -0.548 6.548 18 C -0.273 4.273 19 C 0.067 3.933 20 N -0.307 5.307 21 N -0.372 5.372 22 C 0.101 3.899 23 C 0.109 3.891 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.262 0.738 38 H 0.198 0.802 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 -7.846 -14.817 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.208 4.208 4 C -0.179 4.179 5 C -0.024 4.024 6 N -0.319 5.319 7 C 0.128 3.872 8 C -0.563 4.563 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.724 3.276 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.369 3.631 17 O -0.427 6.427 18 C -0.287 4.287 19 C -0.120 4.120 20 N -0.128 5.128 21 N -0.153 5.153 22 C -0.040 4.040 23 C -0.040 4.040 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.214 0.786 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.553 -8.605 -15.262 18.380 hybrid contribution 1.266 0.775 0.796 1.685 sum -4.287 -7.831 -14.466 16.999 Atomic orbital electron populations 1.21838 0.95437 1.01505 1.01586 1.21079 0.95503 0.96762 0.98047 1.21906 1.01760 0.95632 1.01465 1.22228 0.96558 1.00452 0.98654 1.21797 0.92894 1.00188 0.87522 1.48003 1.63156 1.06727 1.14029 1.19264 0.96231 0.88946 0.82745 1.21455 0.97441 1.28964 1.08470 0.92500 1.24915 0.97652 0.96297 0.95175 1.69933 1.35614 1.36192 1.11626 0.86531 0.84818 0.79011 0.77254 1.20684 1.21138 1.19969 1.17212 0.77638 0.81835 0.86423 1.90733 1.48977 1.72743 1.30266 1.20622 1.04734 1.02567 1.00820 1.24627 0.99234 0.97038 0.91073 1.77094 1.05312 1.06312 1.24044 1.48313 1.26434 1.24519 1.15994 1.21887 0.99012 0.84968 0.98180 1.22879 0.99205 0.94268 0.87697 0.92611 0.92980 0.92877 0.91329 0.92410 0.91943 0.93235 0.91944 0.90642 0.89980 0.90726 0.94940 0.93722 0.92790 0.78575 0.90646 0.89215 0.89315 0.79909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.19 37.16 0.34 -1.16 16 2 C -0.09 -1.09 2.91 -90.62 -0.26 -1.35 16 3 C -0.15 -1.78 8.95 37.16 0.33 -1.45 16 4 C -0.14 -1.99 4.11 -26.73 -0.11 -2.10 16 5 C 0.10 1.69 4.77 -4.04 -0.02 1.67 16 6 N -0.59 -12.84 2.46 -176.33 -0.43 -13.27 16 7 C 0.25 6.52 5.22 -5.19 -0.03 6.49 16 8 C -0.52 -14.93 9.39 -34.44 -0.32 -15.26 16 9 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 12 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.58 12.90 7.59 -12.52 -0.10 12.81 16 17 O -0.55 -14.37 16.60 5.27 0.09 -14.28 16 18 C -0.27 -4.83 5.50 -105.07 -0.58 -5.41 16 19 C 0.07 1.02 9.46 -16.98 -0.16 0.86 16 20 N -0.31 -4.56 12.50 30.86 0.39 -4.18 16 21 N -0.37 -4.84 3.98 -67.59 -0.27 -5.11 16 22 C 0.10 0.76 11.44 59.85 0.68 1.45 16 23 C 0.11 1.63 11.44 -16.56 -0.19 1.44 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.79 6.47 -51.93 -0.34 0.45 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.85 6.48 -51.93 -0.34 0.52 16 32 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 33 H 0.08 1.44 6.33 -51.93 -0.33 1.11 16 34 H 0.07 1.16 4.70 -51.93 -0.24 0.91 16 35 H 0.03 0.86 8.02 -51.92 -0.42 0.44 16 36 H 0.04 1.33 7.35 -51.93 -0.38 0.95 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.20 2.66 4.07 -52.48 -0.21 2.44 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -34.76 344.10 -6.28 -41.04 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.45 Total: -0.06 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.50 Total: -0.34 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.42 Total: -48.45 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.09 Total: -14.28 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.76 -6.28 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.359 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds