Wall clock time and date at job start Tue Mar 31 2020 03:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47504 * 2 1 4 4 H 1.09001 * 109.46619 * 304.99902 * 3 2 1 5 5 C 1.50698 * 109.47350 * 184.99926 * 3 2 1 6 6 H 1.07994 * 119.99876 * 239.99343 * 5 3 2 7 7 C 1.37883 * 119.99785 * 59.99855 * 5 3 2 8 8 N 1.31507 * 119.99949 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99555 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47252 * 89.99977 * 9 7 5 11 11 H 1.48502 * 109.46960 * 209.99858 * 9 7 5 12 12 H 1.48497 * 109.47540 * 330.00061 * 9 7 5 13 13 N 1.46501 * 109.47158 * 64.99550 * 3 2 1 14 14 C 1.34778 * 120.00091 * 275.00794 * 13 3 2 15 15 O 1.21280 * 120.00312 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99947 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47196 * 299.99910 * 16 14 13 18 18 C 1.53003 * 109.47101 * 59.99674 * 16 14 13 19 19 C 1.50693 * 109.47390 * 179.97438 * 16 14 13 20 20 C 1.39878 * 126.04233 * 304.90356 * 19 16 14 21 21 C 1.50701 * 125.89722 * 359.97438 * 20 19 16 22 22 N 1.30829 * 108.20345 * 180.02562 * 20 19 16 23 23 N 1.40089 * 108.20930 * 359.78208 * 22 20 19 24 24 H 0.96993 * 126.04262 * 180.23537 * 23 22 20 25 25 C 1.34952 * 107.91930 * 0.36034 * 23 22 20 26 26 C 1.50703 * 126.12288 * 179.90687 * 25 23 22 27 27 H 1.09004 * 109.46791 * 300.00166 * 1 2 3 28 28 H 1.09001 * 109.46781 * 60.00210 * 1 2 3 29 29 H 1.08999 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47415 * 239.99473 * 2 1 3 31 31 H 1.09007 * 109.47114 * 120.00039 * 2 1 3 32 32 H 0.97002 * 119.99860 * 180.02562 * 8 7 5 33 33 H 0.96994 * 119.99890 * 94.99942 * 13 3 2 34 34 H 1.09007 * 109.47336 * 304.48787 * 18 16 14 35 35 H 1.08997 * 109.47291 * 64.48628 * 18 16 14 36 36 H 1.08998 * 109.47431 * 184.48707 * 18 16 14 37 37 H 1.09009 * 109.46786 * 95.54269 * 21 20 19 38 38 H 1.08993 * 109.47019 * 215.54314 * 21 20 19 39 39 H 1.08999 * 109.46798 * 335.55017 * 21 20 19 40 40 H 1.08999 * 109.47005 * 269.69071 * 26 25 23 41 41 H 1.08997 * 109.46878 * 149.69263 * 26 25 23 42 42 H 1.08997 * 109.47272 * 29.69430 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4063 0.3365 -2.1728 9 14 6.0049 0.8811 -1.3817 10 1 6.5549 -0.3502 -0.7601 11 1 6.3830 0.9222 -2.8172 12 1 6.5570 2.0737 -0.6902 13 7 1.6525 2.0976 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3393 2.6327 0.4341 16 6 0.0363 3.3377 2.6547 17 1 0.0673 2.6131 3.4684 18 6 1.0068 4.4821 2.9538 19 6 -1.3611 3.8863 2.5230 20 6 -1.8103 4.7648 1.5316 21 6 -0.9792 5.3287 0.4080 22 7 -3.0763 5.0134 1.7489 23 7 -3.4747 4.2959 2.8841 24 1 -4.3633 4.2901 3.2728 25 6 -2.4029 3.6163 3.3432 26 6 -2.3734 2.7135 4.5494 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8294 -0.0620 -2.9494 33 1 2.2719 2.1232 1.9977 34 1 2.0270 4.0985 2.9701 35 1 0.9179 5.2453 2.1807 36 1 0.7669 4.9179 3.9237 37 1 -1.1143 4.7188 -0.4853 38 1 -1.2943 6.3513 0.2009 39 1 0.0721 5.3236 0.6958 40 1 -2.1074 3.2950 5.4321 41 1 -1.6346 1.9268 4.3964 42 1 -3.3568 2.2655 4.6922 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132060540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:56 Heat of formation + Delta-G solvation = 16.323846 kcal Electronic energy + Delta-G solvation = -22868.205243 eV Core-core repulsion = 19656.276029 eV Total energy + Delta-G solvation = -3211.929214 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28760 -38.88344 -35.14010 -33.87969 -33.18371 -32.25075 -30.92109 -29.87245 -27.77409 -26.96094 -26.58560 -24.05334 -22.83453 -20.60671 -19.94629 -19.29745 -18.81848 -17.47851 -16.45416 -15.60693 -15.26814 -15.09594 -14.61007 -14.28362 -13.80170 -13.48425 -13.27602 -13.18356 -12.82215 -12.63101 -12.31384 -12.27734 -12.20089 -11.92402 -11.71967 -11.48044 -11.28390 -11.19222 -11.03592 -10.94525 -10.75418 -10.26917 -10.14486 -10.07247 -9.57202 -8.99436 -8.96870 -8.76828 -8.45141 -8.14189 -7.68480 -6.08386 -4.17384 2.01719 2.96298 3.01881 3.26118 3.33457 3.35238 3.58046 4.24708 4.46405 4.71101 4.87719 5.01944 5.22889 5.26613 5.31498 5.37886 5.49355 5.55627 5.68488 5.81596 5.91837 5.98830 6.13494 6.25970 6.30311 6.38133 6.44128 6.50569 6.51593 6.72636 6.95851 7.09763 7.26787 7.43872 7.45174 7.57002 7.67802 7.81143 7.93141 7.97129 8.24092 8.78643 8.85892 9.28906 9.51212 10.96779 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.026785 B = 0.004619 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.104231 B = 6061.101269 C = 6184.934165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.505 3.495 15 O -0.537 6.537 16 C -0.036 4.036 17 H 0.091 0.909 18 C -0.141 4.141 19 C -0.203 4.203 20 C 0.121 3.879 21 C -0.072 4.072 22 N -0.308 5.308 23 N -0.484 5.484 24 H 0.433 0.567 25 C 0.082 3.918 26 C -0.092 4.092 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.019 0.981 30 H 0.097 0.903 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.386 0.614 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 5.718 13.329 16.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.289 3.711 15 O -0.414 6.414 16 C -0.059 4.059 17 H 0.109 0.891 18 C -0.199 4.199 19 C -0.214 4.214 20 C -0.046 4.046 21 C -0.131 4.131 22 N -0.132 5.132 23 N -0.192 5.192 24 H 0.276 0.724 25 C -0.046 4.046 26 C -0.150 4.150 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.115 0.885 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.218 0.782 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.419 6.219 12.025 16.492 hybrid contribution 1.428 -0.659 0.769 1.751 sum -7.991 5.559 12.794 16.076 Atomic orbital electron populations 1.21823 0.98378 0.97777 1.01284 1.21931 0.92545 1.00040 1.02063 1.18718 0.93951 0.89028 0.81268 0.93383 1.21247 0.90883 1.38773 1.06124 0.92175 1.24876 0.98410 0.94923 0.95448 1.69896 1.35023 1.37697 1.09383 0.86495 0.85152 0.78387 0.77332 1.20645 1.21154 1.19880 1.46473 1.14763 1.56370 1.18326 1.20235 0.82581 0.79294 0.88991 1.90654 1.51232 1.59231 1.40324 1.19615 0.91394 0.97466 0.97454 0.89114 1.21837 0.98269 0.97876 1.01916 1.19144 0.95586 1.07214 0.99493 1.22066 0.91317 0.95221 0.95970 1.20307 0.97724 0.99626 0.95398 1.77248 1.13948 1.19472 1.02504 1.46003 1.10744 1.38646 1.23758 0.72400 1.20732 0.88205 0.97508 0.98152 1.20448 1.03513 0.97809 0.93258 0.94207 0.93225 0.96184 0.88486 0.95229 0.92656 0.78225 0.91721 0.91719 0.92284 0.89263 0.92068 0.90604 0.90338 0.89587 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.67 2.24 -69.08 -0.15 6.52 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.73 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.92 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.71 -14.08 4.89 -54.93 -0.27 -14.35 16 14 C 0.50 9.50 5.02 -10.99 -0.06 9.44 16 15 O -0.54 -11.91 10.67 5.56 0.06 -11.85 16 16 C -0.04 -0.53 2.84 -92.93 -0.26 -0.79 16 17 H 0.09 1.12 6.76 -51.93 -0.35 0.77 16 18 C -0.14 -1.75 9.02 37.16 0.34 -1.41 16 19 C -0.20 -3.10 4.44 -105.05 -0.47 -3.57 16 20 C 0.12 2.03 6.50 -82.41 -0.54 1.49 16 21 C -0.07 -1.15 8.74 36.01 0.31 -0.84 16 22 N -0.31 -5.08 12.70 33.67 0.43 -4.66 16 23 N -0.48 -6.30 7.36 33.48 0.25 -6.05 16 24 H 0.43 4.03 8.96 -182.61 -1.64 2.39 16 25 C 0.08 1.06 7.21 -82.26 -0.59 0.47 16 26 C -0.09 -0.79 10.10 36.01 0.36 -0.43 16 27 H 0.04 0.87 5.65 -51.93 -0.29 0.57 16 28 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.39 6.67 7.90 -40.82 -0.32 6.34 16 34 H 0.06 0.76 7.44 -51.92 -0.39 0.37 16 35 H 0.06 0.85 5.56 -51.93 -0.29 0.56 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.61 7.44 -51.92 -0.39 1.23 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.18 5.08 -51.93 -0.26 0.92 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.75 7.08 -51.93 -0.37 0.39 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 330.00 15.07 4.97 4.97 Total: -1.00 -31.56 330.00 -7.72 -39.28 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.48 Total: 8.63 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.28 Total: -7.42 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 1.03 Total: -48.98 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.06 Total: -11.85 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.56 -7.72 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132060540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.608 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds