Wall clock time and date at job start Tue Mar 31 2020 03:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47504 * 2 1 4 4 H 1.09001 * 109.46619 * 304.99902 * 3 2 1 5 5 C 1.50698 * 109.47350 * 184.99926 * 3 2 1 6 6 H 1.07994 * 119.99876 * 239.99343 * 5 3 2 7 7 C 1.37883 * 119.99785 * 59.99855 * 5 3 2 8 8 N 1.31507 * 119.99949 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99555 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47252 * 89.99977 * 9 7 5 11 11 H 1.48502 * 109.46960 * 209.99858 * 9 7 5 12 12 H 1.48497 * 109.47540 * 330.00061 * 9 7 5 13 13 N 1.46501 * 109.47158 * 64.99550 * 3 2 1 14 14 C 1.34778 * 120.00091 * 275.00794 * 13 3 2 15 15 O 1.21280 * 120.00312 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99947 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47196 * 299.99910 * 16 14 13 18 18 C 1.53003 * 109.47101 * 59.99674 * 16 14 13 19 19 C 1.50693 * 109.47390 * 179.97438 * 16 14 13 20 20 C 1.39878 * 126.04233 * 304.90356 * 19 16 14 21 21 C 1.50701 * 125.89722 * 359.97438 * 20 19 16 22 22 N 1.30829 * 108.20345 * 180.02562 * 20 19 16 23 23 N 1.40089 * 108.20930 * 359.78208 * 22 20 19 24 24 H 0.96993 * 126.04262 * 180.23537 * 23 22 20 25 25 C 1.34952 * 107.91930 * 0.36034 * 23 22 20 26 26 C 1.50703 * 126.12288 * 179.90687 * 25 23 22 27 27 H 1.09004 * 109.46791 * 300.00166 * 1 2 3 28 28 H 1.09001 * 109.46781 * 60.00210 * 1 2 3 29 29 H 1.08999 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47415 * 239.99473 * 2 1 3 31 31 H 1.09007 * 109.47114 * 120.00039 * 2 1 3 32 32 H 0.97002 * 119.99860 * 180.02562 * 8 7 5 33 33 H 0.96994 * 119.99890 * 94.99942 * 13 3 2 34 34 H 1.09007 * 109.47336 * 304.48787 * 18 16 14 35 35 H 1.08997 * 109.47291 * 64.48628 * 18 16 14 36 36 H 1.08998 * 109.47431 * 184.48707 * 18 16 14 37 37 H 1.09009 * 109.46786 * 95.54269 * 21 20 19 38 38 H 1.08993 * 109.47019 * 215.54314 * 21 20 19 39 39 H 1.08999 * 109.46798 * 335.55017 * 21 20 19 40 40 H 1.08999 * 109.47005 * 269.69071 * 26 25 23 41 41 H 1.08997 * 109.46878 * 149.69263 * 26 25 23 42 42 H 1.08997 * 109.47272 * 29.69430 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4063 0.3365 -2.1728 9 14 6.0049 0.8811 -1.3817 10 1 6.5549 -0.3502 -0.7601 11 1 6.3830 0.9222 -2.8172 12 1 6.5570 2.0737 -0.6902 13 7 1.6525 2.0976 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3393 2.6327 0.4341 16 6 0.0363 3.3377 2.6547 17 1 0.0673 2.6131 3.4684 18 6 1.0068 4.4821 2.9538 19 6 -1.3611 3.8863 2.5230 20 6 -1.8103 4.7648 1.5316 21 6 -0.9792 5.3287 0.4080 22 7 -3.0763 5.0134 1.7489 23 7 -3.4747 4.2959 2.8841 24 1 -4.3633 4.2901 3.2728 25 6 -2.4029 3.6163 3.3432 26 6 -2.3734 2.7135 4.5494 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8294 -0.0620 -2.9494 33 1 2.2719 2.1232 1.9977 34 1 2.0270 4.0985 2.9701 35 1 0.9179 5.2453 2.1807 36 1 0.7669 4.9179 3.9237 37 1 -1.1143 4.7188 -0.4853 38 1 -1.2943 6.3513 0.2009 39 1 0.0721 5.3236 0.6958 40 1 -2.1074 3.2950 5.4321 41 1 -1.6346 1.9268 4.3964 42 1 -3.3568 2.2655 4.6922 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132060540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:55 Heat of formation + Delta-G solvation = -5.219925 kcal Electronic energy + Delta-G solvation = -22869.139451 eV Core-core repulsion = 19656.276029 eV Total energy + Delta-G solvation = -3212.863422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.40198 -40.42694 -36.91332 -35.16560 -34.31797 -34.04194 -32.62624 -31.01424 -28.95731 -28.80767 -27.58257 -25.47029 -24.55717 -22.19489 -21.06932 -21.01445 -20.11834 -18.92252 -17.91616 -17.17010 -16.97508 -16.30790 -16.15495 -15.75249 -15.16885 -14.82017 -14.55073 -14.49970 -14.15413 -13.80427 -13.60705 -13.57011 -13.41154 -13.22311 -13.13132 -12.97243 -12.84623 -12.78718 -12.61606 -12.42600 -12.14378 -12.09964 -11.96937 -11.53009 -11.24198 -10.96448 -10.50441 -10.27259 -10.09595 -9.43737 -9.24388 -8.10019 -6.26534 0.96537 1.47650 1.48566 1.58523 1.76670 2.05432 2.10564 2.43278 2.90292 3.19804 3.74515 3.82020 4.04609 4.20322 4.33278 4.43582 4.51823 4.54326 4.55886 4.62499 4.75164 4.80381 4.83366 4.92352 4.96599 5.09838 5.13358 5.18759 5.21312 5.27781 5.33305 5.44686 5.51396 5.63655 5.75653 5.78907 5.88730 6.05922 6.25831 6.54228 6.81477 6.83679 7.21041 7.41690 7.81973 8.94984 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.026785 B = 0.004619 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.104231 B = 6061.101269 C = 6184.934165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.282 3.718 4 H -0.004 1.004 5 C -0.542 4.542 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.708 5.708 14 C 0.501 3.499 15 O -0.574 6.574 16 C -0.022 4.022 17 H 0.121 0.879 18 C -0.138 4.138 19 C -0.235 4.235 20 C 0.099 3.901 21 C -0.066 4.066 22 N -0.341 5.341 23 N -0.473 5.473 24 H 0.449 0.551 25 C 0.100 3.900 26 C -0.091 4.091 27 H 0.046 0.954 28 H 0.021 0.979 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.262 0.738 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.504 5.590 16.600 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.014 0.986 5 C -0.581 4.581 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.188 1.188 13 N -0.357 5.357 14 C 0.288 3.712 15 O -0.453 6.453 16 C -0.045 4.045 17 H 0.139 0.861 18 C -0.196 4.196 19 C -0.246 4.246 20 C -0.067 4.067 21 C -0.125 4.125 22 N -0.165 5.165 23 N -0.183 5.183 24 H 0.295 0.705 25 C -0.030 4.030 26 C -0.149 4.149 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.236 0.764 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.057 6.112 15.341 18.835 hybrid contribution 1.200 -0.603 -0.232 1.363 sum -7.857 5.509 15.109 17.899 Atomic orbital electron populations 1.21641 0.97150 0.98676 1.00196 1.21775 0.93515 0.99568 1.01022 1.18251 0.93280 0.88873 0.81778 0.98639 1.21608 0.91664 1.38377 1.06410 0.90996 1.25737 1.02971 0.94602 0.95157 1.70060 1.36903 1.38655 1.09939 0.85430 0.79603 0.78846 0.76958 1.19821 1.21630 1.18784 1.46225 1.15780 1.56486 1.17224 1.21103 0.81477 0.78350 0.90287 1.90653 1.52214 1.60275 1.42207 1.19560 0.91492 0.98272 0.95135 0.86109 1.21842 0.98078 0.96804 1.02830 1.19340 0.96733 1.08211 1.00366 1.22179 0.91716 0.96188 0.96592 1.20184 0.97979 0.99872 0.94415 1.77156 1.14037 1.21059 1.04294 1.46052 1.11737 1.37762 1.22708 0.70515 1.21366 0.86960 0.96275 0.98407 1.20650 1.05012 0.97328 0.91954 0.93504 0.96016 0.94139 0.91453 0.94102 0.92847 0.76447 0.91007 0.93178 0.89575 0.92344 0.90643 0.90654 0.87628 0.89267 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.52 71.98 0.61 -4.80 16 2 C -0.12 -5.86 5.45 30.60 0.17 -5.70 16 3 C 0.28 14.14 2.24 44.25 0.10 14.24 16 4 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 5 C -0.54 -28.11 8.73 25.60 0.22 -27.89 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -52.50 11.29 21.45 0.24 -52.25 16 9 Si 0.97 41.75 29.54 68.60 2.03 43.78 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 N -0.71 -27.76 4.89 -446.09 -2.18 -29.94 16 14 C 0.50 18.74 5.02 87.66 0.44 19.18 16 15 O -0.57 -26.29 10.67 -3.03 -0.03 -26.33 16 16 C -0.02 -0.60 2.84 -12.29 -0.03 -0.63 16 17 H 0.12 2.51 6.76 -2.38 -0.02 2.49 16 18 C -0.14 -3.09 9.02 71.98 0.65 -2.44 16 19 C -0.24 -6.83 4.44 -20.14 -0.09 -6.91 16 20 C 0.10 3.33 6.50 43.11 0.28 3.61 16 21 C -0.07 -2.22 8.74 71.24 0.62 -1.59 16 22 N -0.34 -11.13 12.70 -47.38 -0.60 -11.73 16 23 N -0.47 -11.39 7.36 -48.00 -0.35 -11.74 16 24 H 0.45 7.29 8.96 -213.34 -1.91 5.38 16 25 C 0.10 2.28 7.21 41.40 0.30 2.58 16 26 C -0.09 -1.16 10.10 71.24 0.72 -0.44 16 27 H 0.05 2.03 5.65 -2.39 -0.01 2.01 16 28 H 0.02 1.06 7.85 -2.39 -0.02 1.04 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 3.73 5.95 -2.39 -0.01 3.72 16 31 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 33 H 0.40 13.20 7.90 -92.71 -0.73 12.47 16 34 H 0.07 1.49 7.44 -2.38 -0.02 1.47 16 35 H 0.05 1.27 5.56 -2.39 -0.01 1.26 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 2.29 7.44 -2.38 -0.02 2.27 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.07 2.46 5.08 -2.39 -0.01 2.44 16 40 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.15 7.08 -2.39 -0.02 1.13 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -71.34 330.00 1.95 -69.40 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -1.59 Total: 28.35 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 4.44 Total: -9.54 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -2.89 Total: -105.66 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.03 Total: -26.33 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -71.34 1.95 -69.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132060540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.177 kcal (2) G-P(sol) polarization free energy of solvation -71.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds