Wall clock time and date at job start Tue Mar 31 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46874 * 2 1 4 4 C 1.53001 * 109.47215 * 176.19383 * 3 2 1 5 5 C 1.53003 * 109.46966 * 295.16116 * 4 3 2 6 6 N 1.46502 * 109.47135 * 296.19448 * 3 2 1 7 7 N 1.28448 * 125.18707 * 305.29663 * 6 3 2 8 8 C 1.30865 * 110.92400 * 180.16210 * 7 6 3 9 9 C 1.39672 * 107.86076 * 359.61088 * 8 7 6 10 10 C 1.36599 * 125.19315 * 125.03054 * 6 3 2 11 11 C 1.47164 * 126.88199 * 0.02562 * 10 6 3 12 12 O 1.21624 * 119.99846 * 349.51911 * 11 10 6 13 13 N 1.34771 * 119.99764 * 169.52614 * 11 10 6 14 14 C 1.46501 * 120.00502 * 0.04516 * 13 11 10 15 15 C 1.46504 * 120.00096 * 180.02562 * 13 11 10 16 16 C 1.50709 * 109.46728 * 89.99777 * 15 13 11 17 17 H 1.07990 * 120.00203 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99525 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00315 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99851 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47029 * 120.00033 * 20 18 16 23 23 H 1.48501 * 109.47174 * 240.00195 * 20 18 16 24 24 H 1.09002 * 109.46939 * 185.02761 * 1 2 3 25 25 H 1.09001 * 109.47414 * 305.02461 * 1 2 3 26 26 H 1.09000 * 109.47266 * 65.03290 * 1 2 3 27 27 H 1.08999 * 109.47425 * 239.99821 * 2 1 3 28 28 H 1.09000 * 109.47068 * 119.99452 * 2 1 3 29 29 H 1.09002 * 109.47070 * 56.19067 * 3 2 1 30 30 H 1.08994 * 109.47355 * 55.15865 * 4 3 2 31 31 H 1.09000 * 109.47262 * 175.16697 * 4 3 2 32 32 H 1.09000 * 109.47000 * 305.14288 * 5 4 3 33 33 H 1.09002 * 109.47344 * 65.13988 * 5 4 3 34 34 H 1.09001 * 109.46933 * 185.13881 * 5 4 3 35 35 H 1.07998 * 126.06595 * 179.88339 * 8 7 6 36 36 H 1.08002 * 127.31658 * 180.24264 * 9 8 7 37 37 H 1.08999 * 109.46788 * 83.13077 * 14 13 11 38 38 H 1.08993 * 109.47647 * 203.13000 * 14 13 11 39 39 H 1.09005 * 109.46663 * 323.13523 * 14 13 11 40 40 H 1.09000 * 109.47350 * 209.99708 * 15 13 11 41 41 H 1.09002 * 109.46880 * 330.00153 * 15 13 11 42 42 H 0.97001 * 120.00630 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5669 1.4437 0.0958 5 6 3.9938 0.8598 1.4440 6 7 1.6279 2.1062 -1.2394 7 7 1.8698 1.6758 -2.4252 8 6 1.3777 2.4872 -3.3263 9 6 0.7498 3.5403 -2.6573 10 6 0.9233 3.2743 -1.3102 11 6 0.4453 4.0873 -0.1806 12 8 0.4990 3.6464 0.9517 13 7 -0.0522 5.3204 -0.4007 14 6 -0.1179 5.8511 -1.7647 15 6 -0.5276 6.1300 0.7239 16 6 0.6099 6.9594 1.2619 17 1 1.5888 6.8907 0.8110 18 6 0.4007 7.8060 2.3299 19 7 -0.7912 7.8894 2.8793 20 14 1.8107 8.8336 2.9973 21 1 3.0396 8.5583 2.2104 22 1 1.4673 10.2743 2.8902 23 1 2.0461 8.4854 4.4216 24 1 -0.3633 -1.0237 0.0901 25 1 -0.3634 0.5898 0.8416 26 1 -0.3634 0.4338 -0.9316 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6219 1.9757 0.8539 30 1 3.9820 0.8384 -0.7100 31 1 3.9357 2.4658 0.0094 32 1 3.5054 1.4092 2.2489 33 1 3.7047 -0.1901 1.4933 34 1 5.0753 0.9442 1.5505 35 1 1.4417 2.3623 -4.3971 36 1 0.2375 4.3829 -3.0976 37 1 -1.0189 5.4823 -2.2549 38 1 -0.1431 6.9402 -1.7300 39 1 0.7592 5.5254 -2.3239 40 1 -1.3283 6.7876 0.3854 41 1 -0.9032 5.4750 1.5100 42 1 -0.9384 8.4848 3.6309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162079978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:15 Heat of formation + Delta-G solvation = 46.467330 kcal Electronic energy + Delta-G solvation = -22803.426070 eV Core-core repulsion = 19592.803975 eV Total energy + Delta-G solvation = -3210.622094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.36150 -38.69140 -36.89817 -34.99125 -32.79557 -31.85918 -31.10901 -30.69698 -27.66155 -26.58331 -25.91995 -23.62998 -22.88383 -22.06429 -21.54369 -20.05077 -18.74268 -16.79114 -16.59533 -15.89995 -15.82370 -15.19561 -14.84860 -14.53595 -14.35172 -14.17233 -13.92761 -13.49579 -13.43220 -12.77526 -12.42638 -12.32503 -12.20520 -12.17602 -11.94272 -11.60816 -11.42202 -11.24660 -11.04448 -10.94409 -10.87364 -10.69382 -10.60806 -10.27171 -10.12759 -9.68952 -9.12679 -8.89425 -8.68717 -8.48597 -7.75671 -6.09443 -4.14454 1.70264 2.64938 2.87877 3.26917 3.34541 3.38726 3.76638 3.91633 4.40780 4.49151 4.79930 4.93140 4.96501 5.13184 5.17936 5.25305 5.29521 5.34910 5.45066 5.62966 5.67055 5.67351 5.72108 5.84319 5.86859 5.89389 5.94271 5.99881 6.05404 6.15045 6.20971 6.24264 6.33619 6.74382 6.96174 7.05360 7.34672 7.43308 7.86390 8.15777 8.22334 8.37505 8.79385 8.95309 9.50769 10.98669 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.005431 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.325474 B = 5154.774448 C = 5826.411530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.132 3.868 4 C -0.129 4.129 5 C -0.150 4.150 6 N -0.249 5.249 7 N -0.286 5.286 8 C -0.014 4.014 9 C -0.219 4.219 10 C -0.019 4.019 11 C 0.575 3.425 12 O -0.542 6.542 13 N -0.579 5.579 14 C 0.062 3.938 15 C 0.246 3.754 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.140 0.860 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.180 0.820 36 H 0.175 0.825 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.047 0.953 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.191 -11.999 -9.846 16.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.032 3.968 4 C -0.167 4.167 5 C -0.207 4.207 6 N -0.036 5.036 7 N -0.118 5.118 8 C -0.191 4.191 9 C -0.247 4.247 10 C -0.148 4.148 11 C 0.360 3.640 12 O -0.421 6.421 13 N -0.310 5.310 14 C -0.081 4.081 15 C 0.127 3.873 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.208 1.208 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.157 0.843 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.197 0.803 36 H 0.192 0.808 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.730 -13.165 -8.824 16.540 hybrid contribution 0.269 1.508 0.103 1.535 sum 4.999 -11.657 -8.721 15.393 Atomic orbital electron populations 1.21753 0.95147 1.01586 1.02489 1.21867 0.96876 0.94464 1.03307 1.22281 0.96123 0.94828 0.83555 1.21822 0.93409 1.02430 0.99078 1.21775 1.01514 1.00974 0.96483 1.45841 1.36940 1.15406 1.05437 1.73029 1.22489 1.26037 0.90221 1.23509 1.02445 0.93852 0.99246 1.23012 1.07493 1.02836 0.91355 1.21802 1.04446 0.92362 0.96202 1.16904 0.79070 0.81735 0.86263 1.90678 1.56971 1.71370 1.23122 1.47875 1.59698 1.14172 1.09236 1.22369 1.00921 1.00881 0.83927 1.19412 0.95014 0.89685 0.83169 1.21445 0.96380 1.23176 1.15600 0.92331 1.24926 0.95900 0.96971 0.96212 1.69936 1.21233 1.38229 1.23870 0.86437 0.82279 0.79741 0.78960 1.19796 1.20878 1.20825 0.92549 0.91894 0.93090 0.90752 0.89848 0.84290 0.90980 0.91376 0.91776 0.92244 0.92131 0.80340 0.80777 0.93067 0.90466 0.90391 0.94497 0.93531 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.73 37.16 0.36 -1.67 16 2 C -0.13 -1.60 5.27 -26.73 -0.14 -1.74 16 3 C 0.13 2.00 2.43 -67.93 -0.17 1.83 16 4 C -0.13 -1.71 5.66 -26.73 -0.15 -1.86 16 5 C -0.15 -1.64 9.54 37.16 0.35 -1.29 16 6 N -0.25 -4.11 2.59 -50.69 -0.13 -4.24 16 7 N -0.29 -4.41 11.45 30.59 0.35 -4.06 16 8 C -0.01 -0.19 12.03 -17.43 -0.21 -0.40 16 9 C -0.22 -3.19 8.85 -38.99 -0.35 -3.53 16 10 C -0.02 -0.34 6.79 -82.06 -0.56 -0.90 16 11 C 0.57 12.35 7.64 -12.64 -0.10 12.26 16 12 O -0.54 -13.22 14.02 5.26 0.07 -13.15 16 13 N -0.58 -12.36 2.86 -184.33 -0.53 -12.89 16 14 C 0.06 0.99 8.72 59.85 0.52 1.52 16 15 C 0.25 6.33 5.13 -5.19 -0.03 6.30 16 16 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 17 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 20 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.76 7.86 -51.93 -0.41 0.35 16 27 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 28 H 0.08 0.88 6.50 -51.93 -0.34 0.54 16 29 H 0.14 2.48 5.36 -51.93 -0.28 2.20 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.55 6.73 -51.93 -0.35 0.20 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.18 2.09 4.65 -52.49 -0.24 1.85 16 37 H 0.05 0.68 7.60 -51.93 -0.39 0.29 16 38 H 0.08 1.23 8.02 -51.93 -0.42 0.81 16 39 H 0.08 1.10 4.97 -51.93 -0.26 0.84 16 40 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 41 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -32.13 339.92 -6.68 -38.81 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.41 Total: 2.11 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -0.87 Total: -2.90 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.43 Total: -46.59 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.07 Total: -13.15 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.13 -6.68 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162079978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.280 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds