Wall clock time and date at job start Tue Mar 31 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46874 * 2 1 4 4 C 1.53001 * 109.47215 * 176.19383 * 3 2 1 5 5 C 1.53003 * 109.46966 * 295.16116 * 4 3 2 6 6 N 1.46502 * 109.47135 * 296.19448 * 3 2 1 7 7 N 1.28448 * 125.18707 * 305.29663 * 6 3 2 8 8 C 1.30865 * 110.92400 * 180.16210 * 7 6 3 9 9 C 1.39672 * 107.86076 * 359.61088 * 8 7 6 10 10 C 1.36599 * 125.19315 * 125.03054 * 6 3 2 11 11 C 1.47164 * 126.88199 * 0.02562 * 10 6 3 12 12 O 1.21624 * 119.99846 * 349.51911 * 11 10 6 13 13 N 1.34771 * 119.99764 * 169.52614 * 11 10 6 14 14 C 1.46501 * 120.00502 * 0.04516 * 13 11 10 15 15 C 1.46504 * 120.00096 * 180.02562 * 13 11 10 16 16 C 1.50709 * 109.46728 * 89.99777 * 15 13 11 17 17 H 1.07990 * 120.00203 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99525 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00315 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99851 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47029 * 120.00033 * 20 18 16 23 23 H 1.48501 * 109.47174 * 240.00195 * 20 18 16 24 24 H 1.09002 * 109.46939 * 185.02761 * 1 2 3 25 25 H 1.09001 * 109.47414 * 305.02461 * 1 2 3 26 26 H 1.09000 * 109.47266 * 65.03290 * 1 2 3 27 27 H 1.08999 * 109.47425 * 239.99821 * 2 1 3 28 28 H 1.09000 * 109.47068 * 119.99452 * 2 1 3 29 29 H 1.09002 * 109.47070 * 56.19067 * 3 2 1 30 30 H 1.08994 * 109.47355 * 55.15865 * 4 3 2 31 31 H 1.09000 * 109.47262 * 175.16697 * 4 3 2 32 32 H 1.09000 * 109.47000 * 305.14288 * 5 4 3 33 33 H 1.09002 * 109.47344 * 65.13988 * 5 4 3 34 34 H 1.09001 * 109.46933 * 185.13881 * 5 4 3 35 35 H 1.07998 * 126.06595 * 179.88339 * 8 7 6 36 36 H 1.08002 * 127.31658 * 180.24264 * 9 8 7 37 37 H 1.08999 * 109.46788 * 83.13077 * 14 13 11 38 38 H 1.08993 * 109.47647 * 203.13000 * 14 13 11 39 39 H 1.09005 * 109.46663 * 323.13523 * 14 13 11 40 40 H 1.09000 * 109.47350 * 209.99708 * 15 13 11 41 41 H 1.09002 * 109.46880 * 330.00153 * 15 13 11 42 42 H 0.97001 * 120.00630 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5669 1.4437 0.0958 5 6 3.9938 0.8598 1.4440 6 7 1.6279 2.1062 -1.2394 7 7 1.8698 1.6758 -2.4252 8 6 1.3777 2.4872 -3.3263 9 6 0.7498 3.5403 -2.6573 10 6 0.9233 3.2743 -1.3102 11 6 0.4453 4.0873 -0.1806 12 8 0.4990 3.6464 0.9517 13 7 -0.0522 5.3204 -0.4007 14 6 -0.1179 5.8511 -1.7647 15 6 -0.5276 6.1300 0.7239 16 6 0.6099 6.9594 1.2619 17 1 1.5888 6.8907 0.8110 18 6 0.4007 7.8060 2.3299 19 7 -0.7912 7.8894 2.8793 20 14 1.8107 8.8336 2.9973 21 1 3.0396 8.5583 2.2104 22 1 1.4673 10.2743 2.8902 23 1 2.0461 8.4854 4.4216 24 1 -0.3633 -1.0237 0.0901 25 1 -0.3634 0.5898 0.8416 26 1 -0.3634 0.4338 -0.9316 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6219 1.9757 0.8539 30 1 3.9820 0.8384 -0.7100 31 1 3.9357 2.4658 0.0094 32 1 3.5054 1.4092 2.2489 33 1 3.7047 -0.1901 1.4933 34 1 5.0753 0.9442 1.5505 35 1 1.4417 2.3623 -4.3971 36 1 0.2375 4.3829 -3.0976 37 1 -1.0189 5.4823 -2.2549 38 1 -0.1431 6.9402 -1.7300 39 1 0.7592 5.5254 -2.3239 40 1 -1.3283 6.7876 0.3854 41 1 -0.9032 5.4750 1.5100 42 1 -0.9384 8.4848 3.6309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162079978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:14 Heat of formation + Delta-G solvation = 26.788472 kcal Electronic energy + Delta-G solvation = -22804.279409 eV Core-core repulsion = 19592.803975 eV Total energy + Delta-G solvation = -3211.475434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.57599 -40.35686 -38.02191 -36.69068 -34.85741 -32.88178 -32.31169 -32.10410 -29.49793 -27.96448 -27.14988 -25.53004 -23.92744 -23.20541 -22.98631 -21.45319 -20.02043 -18.73751 -18.21565 -17.41462 -17.10445 -16.89314 -16.20779 -15.95322 -15.83720 -15.43080 -15.03223 -14.88539 -14.59499 -14.29821 -14.12079 -13.84010 -13.43939 -13.41200 -13.17452 -13.01451 -12.94039 -12.72230 -12.60177 -12.44496 -12.23023 -12.09334 -12.01029 -11.73504 -11.65859 -11.42055 -10.77495 -10.66703 -10.15003 -9.88872 -9.50485 -8.25177 -6.39805 0.34644 1.35439 1.37144 1.41605 1.49889 1.76472 2.20168 2.34840 2.41548 3.04825 3.38901 3.51621 3.73063 3.91386 4.05491 4.15677 4.22516 4.32821 4.35548 4.35885 4.52124 4.59877 4.65495 4.69730 4.80389 4.86931 4.88406 4.90933 4.97593 5.01514 5.03068 5.10352 5.17789 5.23941 5.28772 5.50219 5.63383 5.77270 5.87461 6.01209 6.56448 6.68606 7.13482 7.21530 7.34420 8.82263 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.005431 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.325474 B = 5154.774448 C = 5826.411530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.125 3.875 4 C -0.121 4.121 5 C -0.146 4.146 6 N -0.254 5.254 7 N -0.289 5.289 8 C -0.007 4.007 9 C -0.199 4.199 10 C -0.056 4.056 11 C 0.567 3.433 12 O -0.587 6.587 13 N -0.588 5.588 14 C 0.057 3.943 15 C 0.261 3.739 16 C -0.543 4.543 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.270 1.270 22 H -0.267 1.267 23 H -0.280 1.280 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.032 0.968 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.223 0.777 36 H 0.202 0.798 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.033 0.967 41 H 0.003 0.997 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.544 -12.680 -12.031 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.025 3.975 4 C -0.160 4.160 5 C -0.204 4.204 6 N -0.042 5.042 7 N -0.122 5.122 8 C -0.182 4.182 9 C -0.227 4.227 10 C -0.184 4.184 11 C 0.355 3.645 12 O -0.469 6.469 13 N -0.318 5.318 14 C -0.084 4.084 15 C 0.141 3.859 16 C -0.581 4.581 17 H 0.069 0.931 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.791 3.209 21 H -0.194 1.194 22 H -0.192 1.192 23 H -0.206 1.206 24 H 0.100 0.900 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.240 0.760 36 H 0.219 0.781 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.051 0.949 41 H 0.021 0.979 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.079 -13.840 -11.052 18.726 hybrid contribution -0.193 1.679 0.714 1.835 sum 5.886 -12.162 -10.338 17.012 Atomic orbital electron populations 1.21703 0.95912 1.02446 1.00404 1.21857 0.96068 0.92901 1.04764 1.22310 0.97139 0.95697 0.82377 1.21777 0.92056 1.01361 1.00777 1.21775 1.02274 1.01822 0.94490 1.45965 1.37013 1.15114 1.06081 1.73039 1.22594 1.26461 0.90062 1.24235 1.00689 0.92476 1.00847 1.23388 1.06081 1.03477 0.89749 1.21474 1.07275 0.93569 0.96127 1.17434 0.78359 0.81848 0.86889 1.90650 1.58606 1.72393 1.25284 1.47840 1.59631 1.14077 1.10234 1.22690 1.03476 1.00878 0.81366 1.18888 0.94413 0.88837 0.83799 1.21664 0.96486 1.23761 1.16225 0.93143 1.25805 0.98526 0.98120 0.96334 1.70041 1.23163 1.38978 1.24355 0.85388 0.78957 0.78589 0.78007 1.19432 1.19209 1.20618 0.90007 0.94293 0.94917 0.89806 0.87599 0.87792 0.89734 0.93817 0.93516 0.90027 0.90642 0.76047 0.78102 0.89868 0.90632 0.88150 0.94909 0.97857 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.73 71.98 0.70 -3.21 16 2 C -0.12 -2.86 5.27 30.59 0.16 -2.70 16 3 C 0.13 3.84 2.43 44.99 0.11 3.95 16 4 C -0.12 -3.19 5.66 30.60 0.17 -3.02 16 5 C -0.15 -3.10 9.54 71.98 0.69 -2.41 16 6 N -0.25 -8.28 2.59 -314.28 -0.81 -9.10 16 7 N -0.29 -8.29 11.45 -57.14 -0.65 -8.95 16 8 C -0.01 -0.16 12.03 85.18 1.02 0.86 16 9 C -0.20 -5.26 8.85 22.65 0.20 -5.06 16 10 C -0.06 -2.01 6.79 40.79 0.28 -1.73 16 11 C 0.57 25.39 7.64 86.59 0.66 26.05 16 12 O -0.59 -30.77 14.02 -4.11 -0.06 -30.83 16 13 N -0.59 -25.77 2.86 -855.34 -2.44 -28.21 16 14 C 0.06 1.74 8.72 127.77 1.11 2.86 16 15 C 0.26 14.11 5.13 85.64 0.44 14.55 16 16 C -0.54 -31.32 9.39 25.60 0.24 -31.08 16 17 H 0.05 2.92 7.81 -2.92 -0.02 2.90 16 18 C 0.01 0.66 5.46 84.66 0.46 1.12 16 19 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 20 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.03 0.96 7.86 -2.39 -0.02 0.94 16 27 H 0.08 1.89 8.00 -2.39 -0.02 1.87 16 28 H 0.11 2.05 6.50 -2.39 -0.02 2.03 16 29 H 0.10 3.99 5.36 -2.39 -0.01 3.98 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.36 6.73 -2.39 -0.02 1.34 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.22 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.20 4.04 4.65 -2.91 -0.01 4.03 16 37 H 0.08 2.01 7.60 -2.39 -0.02 1.99 16 38 H 0.07 2.33 8.02 -2.39 -0.02 2.31 16 39 H 0.10 2.60 4.97 -2.38 -0.01 2.58 16 40 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 41 H 0.00 0.20 7.42 -2.39 -0.02 0.19 16 42 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -73.65 339.92 5.60 -68.05 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 1.01 Total: 17.22 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 6.25 Total: 0.18 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -3.63 Total: -101.44 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.06 Total: -30.83 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -73.65 5.60 -68.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162079978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.842 kcal (2) G-P(sol) polarization free energy of solvation -73.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds