Wall clock time and date at job start Tue Mar 31 2020 01:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47299 * 2 1 4 4 C 1.52997 * 109.47282 * 120.00110 * 2 1 3 5 5 C 1.53007 * 109.47312 * 65.00034 * 4 2 1 6 6 N 1.46498 * 109.47005 * 180.02562 * 5 4 2 7 7 C 1.46500 * 120.00099 * 269.99536 * 6 5 4 8 8 C 1.50699 * 109.47337 * 270.00633 * 7 6 5 9 9 H 1.08001 * 119.99736 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00031 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00084 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00239 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47227 * 59.99409 * 12 10 8 14 14 H 1.48497 * 109.47450 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47003 * 299.99952 * 12 10 8 16 16 C 1.34781 * 120.00022 * 90.00134 * 6 5 4 17 17 O 1.21277 * 119.99965 * 359.97438 * 16 6 5 18 18 C 1.50703 * 119.99953 * 179.97438 * 16 6 5 19 19 C 1.50699 * 109.46695 * 180.02562 * 18 16 6 20 20 C 1.35315 * 126.13139 * 85.00382 * 19 18 16 21 21 C 1.39870 * 107.92205 * 179.72875 * 20 19 18 22 22 N 1.30839 * 108.19862 * 359.97438 * 21 20 19 23 23 N 1.34948 * 126.12278 * 264.67889 * 19 18 16 24 24 H 0.96997 * 126.03916 * 0.27587 * 23 19 18 25 25 H 1.08998 * 109.46781 * 299.99817 * 1 2 3 26 26 H 1.08992 * 109.47118 * 59.99924 * 1 2 3 27 27 H 1.09006 * 109.47071 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47081 * 239.99715 * 2 1 3 29 29 H 1.08997 * 109.47577 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47129 * 300.00274 * 3 2 1 31 31 H 1.08998 * 109.47264 * 59.99839 * 3 2 1 32 32 H 1.08998 * 109.47060 * 304.99784 * 4 2 1 33 33 H 1.09000 * 109.47526 * 184.99972 * 4 2 1 34 34 H 1.08999 * 109.46790 * 60.00108 * 5 4 2 35 35 H 1.09002 * 109.46486 * 299.99952 * 5 4 2 36 36 H 1.09001 * 109.46959 * 30.00423 * 7 6 5 37 37 H 1.09001 * 109.47380 * 150.00292 * 7 6 5 38 38 H 0.97001 * 119.99851 * 180.02562 * 11 10 8 39 39 H 1.08995 * 109.47102 * 59.99531 * 18 16 6 40 40 H 1.08998 * 109.46785 * 299.99836 * 18 16 6 41 41 H 1.08001 * 126.03507 * 359.74559 * 20 19 18 42 42 H 1.07997 * 125.89701 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.1232 -2.8860 2.3844 7 6 3.4514 -3.5040 2.3830 8 6 3.3409 -4.9312 1.9119 9 1 2.3775 -5.3374 1.6410 10 6 4.4695 -5.7187 1.8278 11 7 5.6425 -5.2242 2.1581 12 14 4.3325 -7.4880 1.2445 13 1 3.7735 -7.5139 -0.1310 14 1 5.6788 -8.1144 1.2430 15 1 3.4361 -8.2421 2.1573 16 6 1.3500 -2.9526 3.4863 17 8 0.2506 -2.4407 3.4876 18 6 1.8516 -3.6634 4.7169 19 6 0.8043 -3.5951 5.7984 20 6 -0.2407 -4.4409 5.9516 21 6 -0.9643 -4.0317 7.0764 22 7 -0.3745 -2.9782 7.5807 23 7 0.7442 -2.6829 6.7911 24 1 1.3659 -1.9521 6.9330 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6055 -0.2617 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 2.0699 -2.6550 0.3002 35 1 0.5490 -2.2724 1.1421 36 1 4.1091 -2.9502 1.7131 37 1 3.8619 -3.4854 3.3926 38 1 6.4366 -5.7782 2.0985 39 1 2.7664 -3.1843 5.0656 40 1 2.0569 -4.7063 4.4758 41 1 -0.4745 -5.2833 5.3175 42 1 -1.8554 -4.5042 7.4624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172772216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:45 Heat of formation + Delta-G solvation = 11.734982 kcal Electronic energy + Delta-G solvation = -22075.791649 eV Core-core repulsion = 18863.663447 eV Total energy + Delta-G solvation = -3212.128202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.93375 -39.10878 -36.58460 -34.79014 -32.64742 -32.30463 -30.73578 -29.37386 -27.36397 -27.04968 -26.67431 -23.25923 -22.88212 -21.41638 -20.26308 -19.79084 -18.52978 -16.98769 -16.71958 -16.27010 -15.43898 -15.01930 -14.62341 -14.50798 -14.04131 -13.95764 -13.77351 -13.40633 -13.11294 -12.84212 -12.57221 -12.39060 -12.15174 -12.08699 -11.74572 -11.58563 -11.37161 -11.08587 -10.99864 -10.78939 -10.72694 -10.51811 -10.42736 -10.30287 -10.06592 -9.80871 -9.40960 -9.07281 -8.62879 -8.27289 -7.77939 -6.25517 -4.33842 2.15298 3.08256 3.16609 3.20483 3.26038 3.26473 3.33243 3.91638 4.28442 4.93246 5.02299 5.07549 5.10244 5.11619 5.13760 5.34809 5.43190 5.66123 5.70582 5.80854 5.87329 5.90877 5.96383 5.99368 6.02839 6.08885 6.10360 6.24523 6.31364 6.36854 6.47782 6.59485 6.64477 6.70842 6.92674 7.07688 7.45396 7.53405 7.69288 7.93104 7.97201 8.25338 8.71072 8.93013 9.35170 10.80940 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.008144 B = 0.007561 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.160122 B = 3702.213732 C = 6496.134068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.127 4.127 5 C 0.120 3.880 6 N -0.593 5.593 7 C 0.236 3.764 8 C -0.542 4.542 9 H 0.062 0.938 10 C 0.067 3.933 11 N -0.891 5.891 12 Si 0.896 3.104 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.519 3.481 17 O -0.564 6.564 18 C -0.080 4.080 19 C 0.125 3.875 20 C -0.263 4.263 21 C 0.048 3.952 22 N -0.306 5.306 23 N -0.472 5.472 24 H 0.434 0.566 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.266 0.734 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 6.191 1.069 8.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.323 5.323 7 C 0.116 3.884 8 C -0.580 4.580 9 H 0.080 0.920 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.724 3.276 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.306 3.694 17 O -0.444 6.444 18 C -0.121 4.121 19 C -0.005 4.005 20 C -0.292 4.292 21 C -0.138 4.138 22 N -0.129 5.129 23 N -0.181 5.181 24 H 0.277 0.723 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.017 7.253 2.000 9.634 hybrid contribution 0.576 -1.348 -1.003 1.776 sum -5.441 5.905 0.997 8.092 Atomic orbital electron populations 1.21872 0.95342 1.02078 1.01119 1.21051 0.95842 0.95898 0.98514 1.21821 1.00890 0.96218 1.01275 1.21988 1.00991 0.95988 0.97596 1.21365 0.99906 0.90941 0.88139 1.48198 1.19240 1.53242 1.11639 1.19461 0.77558 0.92920 0.98481 1.21463 0.94229 0.96393 1.45959 0.91994 1.24939 0.95051 0.98806 0.94884 1.69906 0.98538 1.37043 1.47394 0.86573 0.77312 0.84190 0.79545 1.20108 1.21140 1.19940 1.20088 0.84755 0.79945 0.84617 1.90646 1.21047 1.48792 1.83916 1.20349 0.95740 1.05631 0.90409 1.20598 0.97872 0.91057 0.90981 1.21176 0.98906 1.06063 1.03085 1.23734 0.99994 0.94518 0.95559 1.77206 0.98821 1.18430 1.18393 1.46239 1.23687 1.25810 1.22337 0.72326 0.92831 0.93291 0.92246 0.91150 0.92771 0.93047 0.92960 0.92127 0.91859 0.90540 0.90788 0.94503 0.94503 0.92383 0.88122 0.85044 0.83769 0.80361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.95 37.16 0.33 -1.50 16 2 C -0.09 -1.21 2.92 -90.62 -0.26 -1.47 16 3 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 4 C -0.13 -1.95 5.01 -26.73 -0.13 -2.08 16 5 C 0.12 2.12 5.16 -4.04 -0.02 2.10 16 6 N -0.59 -11.69 2.46 -175.05 -0.43 -12.12 16 7 C 0.24 5.20 4.97 -5.19 -0.03 5.18 16 8 C -0.54 -13.30 9.28 -34.44 -0.32 -13.62 16 9 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -23.51 13.29 55.43 0.74 -22.77 16 12 Si 0.90 19.80 29.54 -169.99 -5.02 14.77 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 16 C 0.52 10.18 7.67 -10.98 -0.08 10.09 16 17 O -0.56 -12.27 15.61 5.56 0.09 -12.18 16 18 C -0.08 -1.36 4.80 -29.03 -0.14 -1.50 16 19 C 0.12 2.08 5.70 -82.26 -0.47 1.61 16 20 C -0.26 -4.29 10.72 -40.01 -0.43 -4.71 16 21 C 0.05 0.72 12.03 -17.36 -0.21 0.51 16 22 N -0.31 -5.01 12.70 30.62 0.39 -4.62 16 23 N -0.47 -7.38 7.36 33.48 0.25 -7.13 16 24 H 0.43 5.57 8.96 -182.62 -1.64 3.93 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.79 6.56 -51.93 -0.34 0.45 16 28 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 35 H 0.07 1.34 5.84 -51.93 -0.30 1.04 16 36 H 0.04 0.86 8.07 -51.93 -0.42 0.45 16 37 H 0.04 0.82 6.44 -51.93 -0.33 0.49 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.10 1.55 7.40 -51.93 -0.38 1.16 16 40 H 0.13 2.33 8.00 -51.93 -0.42 1.91 16 41 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 42 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -29.17 350.84 -8.25 -37.42 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.03 Total: 6.46 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.52 Total: -5.11 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.94 Total: -46.65 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.17 -8.25 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.152 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds