Wall clock time and date at job start Tue Mar 31 2020 01:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47299 * 2 1 4 4 C 1.52997 * 109.47282 * 120.00110 * 2 1 3 5 5 C 1.53007 * 109.47312 * 65.00034 * 4 2 1 6 6 N 1.46498 * 109.47005 * 180.02562 * 5 4 2 7 7 C 1.46500 * 120.00099 * 269.99536 * 6 5 4 8 8 C 1.50699 * 109.47337 * 270.00633 * 7 6 5 9 9 H 1.08001 * 119.99736 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00031 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00084 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00239 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47227 * 59.99409 * 12 10 8 14 14 H 1.48497 * 109.47450 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47003 * 299.99952 * 12 10 8 16 16 C 1.34781 * 120.00022 * 90.00134 * 6 5 4 17 17 O 1.21277 * 119.99965 * 359.97438 * 16 6 5 18 18 C 1.50703 * 119.99953 * 179.97438 * 16 6 5 19 19 C 1.50699 * 109.46695 * 180.02562 * 18 16 6 20 20 C 1.35315 * 126.13139 * 85.00382 * 19 18 16 21 21 C 1.39870 * 107.92205 * 179.72875 * 20 19 18 22 22 N 1.30839 * 108.19862 * 359.97438 * 21 20 19 23 23 N 1.34948 * 126.12278 * 264.67889 * 19 18 16 24 24 H 0.96997 * 126.03916 * 0.27587 * 23 19 18 25 25 H 1.08998 * 109.46781 * 299.99817 * 1 2 3 26 26 H 1.08992 * 109.47118 * 59.99924 * 1 2 3 27 27 H 1.09006 * 109.47071 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47081 * 239.99715 * 2 1 3 29 29 H 1.08997 * 109.47577 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47129 * 300.00274 * 3 2 1 31 31 H 1.08998 * 109.47264 * 59.99839 * 3 2 1 32 32 H 1.08998 * 109.47060 * 304.99784 * 4 2 1 33 33 H 1.09000 * 109.47526 * 184.99972 * 4 2 1 34 34 H 1.08999 * 109.46790 * 60.00108 * 5 4 2 35 35 H 1.09002 * 109.46486 * 299.99952 * 5 4 2 36 36 H 1.09001 * 109.46959 * 30.00423 * 7 6 5 37 37 H 1.09001 * 109.47380 * 150.00292 * 7 6 5 38 38 H 0.97001 * 119.99851 * 180.02562 * 11 10 8 39 39 H 1.08995 * 109.47102 * 59.99531 * 18 16 6 40 40 H 1.08998 * 109.46785 * 299.99836 * 18 16 6 41 41 H 1.08001 * 126.03507 * 359.74559 * 20 19 18 42 42 H 1.07997 * 125.89701 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.1232 -2.8860 2.3844 7 6 3.4514 -3.5040 2.3830 8 6 3.3409 -4.9312 1.9119 9 1 2.3775 -5.3374 1.6410 10 6 4.4695 -5.7187 1.8278 11 7 5.6425 -5.2242 2.1581 12 14 4.3325 -7.4880 1.2445 13 1 3.7735 -7.5139 -0.1310 14 1 5.6788 -8.1144 1.2430 15 1 3.4361 -8.2421 2.1573 16 6 1.3500 -2.9526 3.4863 17 8 0.2506 -2.4407 3.4876 18 6 1.8516 -3.6634 4.7169 19 6 0.8043 -3.5951 5.7984 20 6 -0.2407 -4.4409 5.9516 21 6 -0.9643 -4.0317 7.0764 22 7 -0.3745 -2.9782 7.5807 23 7 0.7442 -2.6829 6.7911 24 1 1.3659 -1.9521 6.9330 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6055 -0.2617 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 2.0699 -2.6550 0.3002 35 1 0.5490 -2.2724 1.1421 36 1 4.1091 -2.9502 1.7131 37 1 3.8619 -3.4854 3.3926 38 1 6.4366 -5.7782 2.0985 39 1 2.7664 -3.1843 5.0656 40 1 2.0569 -4.7063 4.4758 41 1 -0.4745 -5.2833 5.3175 42 1 -1.8554 -4.5042 7.4624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172772216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:45 Heat of formation + Delta-G solvation = -4.211988 kcal Electronic energy + Delta-G solvation = -22076.483162 eV Core-core repulsion = 18863.663447 eV Total energy + Delta-G solvation = -3212.819715 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.19281 -40.65948 -37.84152 -36.38526 -34.46881 -33.66076 -31.98195 -30.75058 -29.03602 -28.12942 -28.00263 -24.96995 -24.35032 -22.61818 -21.53585 -20.90457 -20.06054 -18.64335 -18.27701 -17.89429 -16.95960 -16.37339 -16.21766 -15.97240 -15.33575 -15.16267 -14.92213 -14.60850 -14.42399 -14.32231 -14.16163 -13.79220 -13.62961 -13.33041 -13.15647 -12.90247 -12.81575 -12.72361 -12.51303 -12.23876 -12.04820 -11.94743 -11.67771 -11.56984 -11.53984 -11.41377 -10.89216 -10.58213 -10.41014 -9.55162 -9.44335 -8.18768 -6.33087 0.88116 1.45455 1.47103 1.53600 1.72390 1.86432 1.98384 2.35618 2.49900 3.12326 3.63603 3.77026 3.95474 3.98642 3.99064 4.07429 4.13238 4.36647 4.56933 4.67623 4.70368 4.71551 4.77094 4.81288 4.81598 4.92729 4.96246 5.01852 5.11898 5.15430 5.20951 5.24430 5.32605 5.46169 5.49761 5.67790 5.74705 5.85608 6.07167 6.35724 6.57053 6.72530 6.82138 7.28955 7.42013 8.86264 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.008144 B = 0.007561 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.160122 B = 3702.213732 C = 6496.134068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.116 4.116 5 C 0.117 3.883 6 N -0.595 5.595 7 C 0.250 3.750 8 C -0.547 4.547 9 H 0.054 0.946 10 C 0.026 3.974 11 N -0.918 5.918 12 Si 0.951 3.049 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.269 1.269 16 C 0.517 3.483 17 O -0.585 6.585 18 C -0.071 4.071 19 C 0.111 3.889 20 C -0.278 4.278 21 C 0.051 3.949 22 N -0.323 5.323 23 N -0.471 5.471 24 H 0.443 0.557 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.036 0.964 38 H 0.268 0.732 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.151 0.849 42 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 6.142 0.876 8.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.199 4.199 4 C -0.154 4.154 5 C -0.005 4.005 6 N -0.325 5.325 7 C 0.130 3.870 8 C -0.586 4.586 9 H 0.072 0.928 10 C -0.175 4.175 11 N -0.557 5.557 12 Si 0.777 3.223 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.194 1.194 16 C 0.306 3.694 17 O -0.467 6.467 18 C -0.112 4.112 19 C -0.018 4.018 20 C -0.307 4.307 21 C -0.134 4.134 22 N -0.146 5.146 23 N -0.181 5.181 24 H 0.288 0.712 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.169 0.831 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.564 7.221 1.806 9.924 hybrid contribution 0.709 -1.319 -0.953 1.775 sum -5.855 5.902 0.853 8.357 Atomic orbital electron populations 1.21841 0.94984 1.01494 1.01787 1.21057 0.96109 0.96787 0.97144 1.21789 1.00984 0.94962 1.02116 1.21876 1.00539 0.94467 0.98554 1.21475 0.99475 0.92267 0.87308 1.48206 1.18537 1.53280 1.12461 1.19143 0.78312 0.91796 0.97785 1.21651 0.93840 0.97480 1.45631 0.92767 1.25574 0.94794 1.02066 0.95032 1.69988 0.99051 1.38255 1.48426 0.85707 0.77271 0.80296 0.79046 1.20002 1.20937 1.19418 1.20457 0.84321 0.79571 0.85090 1.90628 1.21922 1.49841 1.84344 1.20234 0.96544 1.04881 0.89571 1.20589 0.98152 0.91833 0.91268 1.21474 0.99070 1.06379 1.03785 1.24318 1.00609 0.93792 0.94728 1.77182 0.99224 1.19202 1.18989 1.46277 1.23847 1.25966 1.21977 0.71242 0.93580 0.91181 0.93450 0.90642 0.92635 0.91256 0.93082 0.93377 0.92351 0.90876 0.91294 0.95993 0.94608 0.92327 0.86637 0.85688 0.83121 0.76829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.95 71.98 0.64 -2.79 16 2 C -0.09 -2.26 2.92 -10.80 -0.03 -2.29 16 3 C -0.14 -2.93 9.19 71.98 0.66 -2.26 16 4 C -0.12 -3.54 5.01 30.60 0.15 -3.39 16 5 C 0.12 4.18 5.16 86.38 0.45 4.63 16 6 N -0.60 -23.62 2.46 -826.14 -2.03 -25.65 16 7 C 0.25 11.12 4.97 85.63 0.43 11.55 16 8 C -0.55 -26.82 9.28 25.60 0.24 -26.59 16 9 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 10 C 0.03 1.31 5.46 84.65 0.46 1.77 16 11 N -0.92 -48.29 13.29 21.45 0.28 -48.00 16 12 Si 0.95 40.08 29.54 68.60 2.03 42.10 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 14 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 16 C 0.52 20.31 7.67 87.66 0.67 20.98 16 17 O -0.59 -25.50 15.61 -3.02 -0.05 -25.55 16 18 C -0.07 -2.41 4.80 29.10 0.14 -2.27 16 19 C 0.11 3.65 5.70 41.40 0.24 3.89 16 20 C -0.28 -8.75 10.72 21.99 0.24 -8.51 16 21 C 0.05 1.44 12.03 85.24 1.03 2.47 16 22 N -0.32 -10.15 12.70 -57.02 -0.72 -10.88 16 23 N -0.47 -14.32 7.36 -48.00 -0.35 -14.67 16 24 H 0.44 11.07 8.96 -213.34 -1.91 9.16 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.23 6.56 -2.38 -0.02 1.21 16 28 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 2.62 8.07 -2.39 -0.02 2.60 16 35 H 0.07 2.53 5.84 -2.39 -0.01 2.51 16 36 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 37 H 0.04 1.60 6.44 -2.39 -0.02 1.59 16 38 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 39 H 0.12 3.51 7.40 -2.39 -0.02 3.49 16 40 H 0.13 4.42 8.00 -2.39 -0.02 4.40 16 41 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.22 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -60.36 350.84 3.56 -56.80 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -0.91 Total: 28.66 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 5.31 Total: -2.82 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -2.82 Total: -99.20 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.05 Total: -25.55 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.10 kcal Total: -60.36 3.56 -56.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.589 kcal (2) G-P(sol) polarization free energy of solvation -60.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds