Wall clock time and date at job start Tue Mar 31 2020 01:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47354 * 2 1 4 4 C 1.53000 * 109.47261 * 239.99944 * 2 1 3 5 5 C 1.53002 * 109.47346 * 119.99770 * 2 1 3 6 6 N 1.46500 * 109.47119 * 54.26879 * 5 2 1 7 7 C 1.46500 * 119.99880 * 275.81259 * 6 5 2 8 8 C 1.50698 * 109.47266 * 269.99744 * 7 6 5 9 9 H 1.08003 * 119.99535 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00208 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00048 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99976 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46810 * 90.00370 * 12 10 8 14 14 H 1.48497 * 109.47040 * 210.00314 * 12 10 8 15 15 H 1.48501 * 109.47034 * 330.00243 * 12 10 8 16 16 C 1.34779 * 120.00265 * 95.80827 * 6 5 2 17 17 O 1.21275 * 120.00034 * 185.44275 * 16 6 5 18 18 C 1.50695 * 119.99727 * 5.44499 * 16 6 5 19 19 C 1.50699 * 109.46938 * 174.43701 * 18 16 6 20 20 C 1.35313 * 126.12619 * 85.00317 * 19 18 16 21 21 C 1.39867 * 107.92461 * 179.73252 * 20 19 18 22 22 N 1.30845 * 108.20124 * 0.02562 * 21 20 19 23 23 N 1.34946 * 126.12834 * 264.68923 * 19 18 16 24 24 H 0.97003 * 126.04203 * 0.26510 * 23 19 18 25 25 H 1.09000 * 109.47194 * 299.99958 * 1 2 3 26 26 H 1.09003 * 109.47484 * 60.00489 * 1 2 3 27 27 H 1.09006 * 109.46904 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47456 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46426 * 300.00159 * 3 2 1 30 30 H 1.09002 * 109.47178 * 59.99416 * 3 2 1 31 31 H 1.09004 * 109.47015 * 304.13156 * 4 2 1 32 32 H 1.09001 * 109.46983 * 64.12988 * 4 2 1 33 33 H 1.08997 * 109.47116 * 184.13217 * 4 2 1 34 34 H 1.08998 * 109.47046 * 294.26988 * 5 2 1 35 35 H 1.08999 * 109.47216 * 174.26912 * 5 2 1 36 36 H 1.09007 * 109.47055 * 29.99811 * 7 6 5 37 37 H 1.08999 * 109.47521 * 149.99760 * 7 6 5 38 38 H 0.96998 * 120.00479 * 179.97438 * 11 10 8 39 39 H 1.09009 * 109.46960 * 54.44082 * 18 16 6 40 40 H 1.08996 * 109.47665 * 294.44041 * 18 16 6 41 41 H 1.08001 * 126.03970 * 359.75530 * 20 19 18 42 42 H 1.07996 * 125.90274 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.4423 -2.0569 1.3203 7 6 0.1135 -2.2342 1.9111 8 6 0.2514 -2.4929 3.3893 9 1 1.2310 -2.5218 3.8433 10 6 -0.8729 -2.6916 4.1622 11 7 -2.0656 -2.6559 3.6094 12 14 -0.7019 -3.0115 5.9947 13 1 -0.7300 -1.7201 6.7273 14 1 -1.8256 -3.8662 6.4549 15 1 0.5859 -3.7024 6.2586 16 6 2.1149 -3.1224 0.8421 17 8 1.5821 -4.2114 0.8102 18 6 3.5290 -2.9607 0.3470 19 6 4.0964 -4.3123 -0.0027 20 6 3.9457 -4.9602 -1.1810 21 6 4.6315 -6.1761 -1.0945 22 7 5.1740 -6.2557 0.0935 23 7 4.8508 -5.0906 0.8011 24 1 5.1213 -4.8807 1.7087 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6174 -1.7254 -1.2870 32 1 1.7383 -0.1665 -2.1377 33 1 3.1274 -0.7858 -1.2129 34 1 1.7629 -0.1515 2.1362 35 1 3.1252 -0.8109 1.1994 36 1 -0.4775 -1.3319 1.7537 37 1 -0.3840 -3.0814 1.4389 38 1 -2.8566 -2.7960 4.1531 39 1 4.1368 -2.5022 1.1271 40 1 3.5336 -2.3246 -0.5381 41 1 3.3937 -4.6016 -2.0373 42 1 4.7012 -6.9207 -1.8736 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172782776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:50 Heat of formation + Delta-G solvation = 29.812437 kcal Electronic energy + Delta-G solvation = -22790.926825 eV Core-core repulsion = 19579.582520 eV Total energy + Delta-G solvation = -3211.344305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.05760 -39.44458 -37.05280 -33.94866 -32.67822 -32.20233 -30.82735 -28.61812 -27.30476 -26.82902 -26.70280 -25.43002 -22.80620 -21.50174 -20.37427 -19.34906 -18.23910 -17.00569 -16.63832 -16.43080 -15.41607 -15.15877 -14.45817 -14.21191 -14.12293 -13.92382 -13.82603 -13.56152 -13.23417 -12.75853 -12.66191 -12.35328 -12.18721 -11.91227 -11.61936 -11.39344 -11.35195 -11.20179 -10.98066 -10.86514 -10.62888 -10.55258 -10.43741 -10.19615 -10.15107 -9.59509 -9.44597 -8.96664 -8.44732 -8.37908 -7.65646 -6.07228 -4.11827 2.04551 2.99030 3.07323 3.26523 3.31224 3.34516 3.38729 3.93799 4.41618 4.71330 4.94706 4.96689 5.01058 5.03499 5.13867 5.25730 5.31873 5.46342 5.58167 5.66845 5.72388 5.79043 5.88980 5.91024 5.93948 6.10377 6.12760 6.19491 6.26352 6.31348 6.39055 6.54306 6.74952 6.82008 7.06410 7.41553 7.44773 7.51888 7.84068 7.89190 8.21470 8.36934 8.85990 9.03794 9.53077 11.00514 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012238 B = 0.006661 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.398650 B = 4202.274728 C = 5882.492983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.145 4.145 5 C 0.118 3.882 6 N -0.591 5.591 7 C 0.238 3.762 8 C -0.528 4.528 9 H 0.055 0.945 10 C 0.062 3.938 11 N -0.893 5.893 12 Si 0.895 3.105 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.509 3.491 17 O -0.530 6.530 18 C -0.096 4.096 19 C 0.120 3.880 20 C -0.261 4.261 21 C 0.048 3.952 22 N -0.301 5.301 23 N -0.470 5.470 24 H 0.435 0.565 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.042 0.958 38 H 0.263 0.737 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.555 6.297 -9.604 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.007 4.007 6 N -0.322 5.322 7 C 0.120 3.880 8 C -0.567 4.567 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.532 5.532 12 Si 0.723 3.277 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.294 3.706 17 O -0.407 6.407 18 C -0.138 4.138 19 C -0.010 4.010 20 C -0.290 4.290 21 C -0.138 4.138 22 N -0.123 5.123 23 N -0.179 5.179 24 H 0.278 0.722 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.139 0.861 41 H 0.162 0.838 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 11.748 4.958 -8.806 15.497 hybrid contribution -0.421 0.502 1.051 1.239 sum 11.328 5.461 -7.755 14.774 Atomic orbital electron populations 1.22051 0.93751 1.03287 1.00983 1.20997 0.97070 0.95107 0.95624 1.21810 1.00491 0.95346 1.01869 1.22044 1.00029 1.00977 0.97198 1.21584 0.96738 0.84695 0.97662 1.48132 1.20580 1.05154 1.58346 1.19523 0.77291 0.98621 0.92599 1.21444 0.92824 1.49292 0.93166 0.92703 1.24908 0.95148 0.95203 0.98728 1.69918 0.97600 1.49726 1.35931 0.86542 0.77809 0.78144 0.85191 1.20627 1.21077 1.20038 1.19929 0.86789 0.84974 0.78864 1.90724 1.69172 1.25607 1.55165 1.20726 0.95948 0.92860 1.04274 1.20433 0.94718 0.94172 0.91661 1.21127 1.10725 0.97468 0.99685 1.23755 0.97089 0.97762 0.95187 1.77253 1.24939 1.03528 1.06613 1.46266 1.42210 1.14488 1.14915 0.72150 0.92225 0.93711 0.90958 0.92904 0.92733 0.92418 0.92236 0.92715 0.92793 0.90043 0.91594 0.93505 0.93981 0.92709 0.88521 0.86113 0.83844 0.80244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 6.98 37.15 0.26 -1.89 16 2 C -0.09 -1.10 0.85 -154.51 -0.13 -1.23 16 3 C -0.14 -1.39 8.47 37.16 0.31 -1.08 16 4 C -0.15 -1.67 6.84 37.16 0.25 -1.41 16 5 C 0.12 1.73 4.58 -4.04 -0.02 1.71 16 6 N -0.59 -11.47 2.00 -175.06 -0.35 -11.82 16 7 C 0.24 5.90 3.93 -5.19 -0.02 5.88 16 8 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 9 H 0.05 1.50 7.81 -52.48 -0.41 1.09 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 12 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.51 9.92 6.40 -10.99 -0.07 9.85 16 17 O -0.53 -13.07 15.60 5.56 0.09 -12.98 16 18 C -0.10 -1.34 4.61 -29.04 -0.13 -1.47 16 19 C 0.12 1.82 5.71 -82.27 -0.47 1.35 16 20 C -0.26 -3.85 10.72 -40.01 -0.43 -4.28 16 21 C 0.05 0.68 12.03 -17.36 -0.21 0.48 16 22 N -0.30 -4.81 12.70 30.62 0.39 -4.42 16 23 N -0.47 -7.11 7.36 33.47 0.25 -6.86 16 24 H 0.44 5.52 8.96 -182.60 -1.64 3.89 16 25 H 0.06 0.94 7.72 -51.93 -0.40 0.54 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.30 5.76 -51.93 -0.30 1.00 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.81 6.74 -51.93 -0.35 0.46 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.51 6.49 -51.93 -0.34 0.18 16 34 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 35 H 0.07 0.78 6.11 -51.93 -0.32 0.46 16 36 H 0.05 1.15 5.32 -51.92 -0.28 0.87 16 37 H 0.04 1.21 7.35 -51.93 -0.38 0.83 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.10 1.11 7.35 -51.92 -0.38 0.73 16 40 H 0.12 1.37 4.67 -51.93 -0.24 1.13 16 41 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.18 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -33.95 335.28 -7.48 -41.44 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.55 Total: 3.60 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.07 Total: -5.28 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 1.02 Total: -48.43 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.95 -7.48 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172782776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.250 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds