Wall clock time and date at job start Tue Mar 31 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47116 * 2 1 4 4 C 1.53004 * 109.47017 * 119.99923 * 2 1 3 5 5 H 1.09006 * 109.46891 * 295.78598 * 4 2 1 6 6 N 1.46904 * 109.46899 * 175.79015 * 4 2 1 7 7 C 1.46901 * 110.99884 * 153.78354 * 6 4 2 8 8 C 1.52995 * 109.47102 * 175.05930 * 7 6 4 9 9 C 1.50703 * 109.47403 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37869 * 120.00509 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99925 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00241 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47178 * 90.00193 * 13 11 9 15 15 H 1.48498 * 109.47042 * 209.99837 * 13 11 9 16 16 H 1.48496 * 109.47202 * 330.00042 * 13 11 9 17 17 C 1.50692 * 109.46995 * 55.78828 * 4 2 1 18 18 N 1.31135 * 126.54889 * 254.70792 * 17 4 2 19 19 C 1.34497 * 105.60937 * 179.97438 * 18 17 4 20 20 C 1.50704 * 126.28263 * 180.12940 * 19 18 17 21 21 C 1.52997 * 117.49727 * 188.91179 * 20 19 18 22 22 C 1.52999 * 60.00119 * 252.51036 * 21 20 19 23 23 N 1.29941 * 107.43120 * 0.35165 * 19 18 17 24 24 O 1.21303 * 110.24729 * 359.78033 * 23 19 18 25 25 H 1.08992 * 109.47344 * 299.99900 * 1 2 3 26 26 H 1.08998 * 109.46901 * 60.00091 * 1 2 3 27 27 H 1.09001 * 109.46758 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47804 * 240.00126 * 2 1 3 29 29 H 1.08997 * 109.47232 * 185.85439 * 3 2 1 30 30 H 1.08994 * 109.46669 * 305.85721 * 3 2 1 31 31 H 1.09001 * 109.46593 * 65.85324 * 3 2 1 32 32 H 1.00897 * 111.00022 * 29.83029 * 6 4 2 33 33 H 1.09000 * 109.47106 * 55.05897 * 7 6 4 34 34 H 1.09004 * 109.47325 * 295.05769 * 7 6 4 35 35 H 1.08999 * 109.47567 * 299.99886 * 8 7 6 36 36 H 1.09000 * 109.47167 * 60.00005 * 8 7 6 37 37 H 0.97001 * 120.00125 * 179.97438 * 12 11 9 38 38 H 1.08999 * 115.55223 * 334.61786 * 20 19 18 39 39 H 1.08995 * 117.50072 * 359.97438 * 21 20 19 40 40 H 1.09000 * 117.49790 * 145.02493 * 21 20 19 41 41 H 1.08998 * 117.49978 * 252.51160 * 22 21 20 42 42 H 1.08999 * 117.52104 * 107.47803 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7396 -0.1656 2.1377 6 7 3.5055 -0.8099 1.1995 7 6 4.0737 -0.8999 2.5512 8 6 5.5855 -1.1142 2.4557 9 6 6.1685 -1.2059 3.8424 10 1 5.5249 -1.1203 4.7054 11 6 7.5233 -1.4000 4.0092 12 7 8.3068 -1.5057 2.9582 13 14 8.2460 -1.5129 5.7280 14 1 8.2399 -2.9290 6.1756 15 1 9.6412 -1.0047 5.7127 16 1 7.4314 -0.6951 6.6622 17 6 1.4543 -2.1087 1.3025 18 7 0.4949 -2.5214 2.0955 19 6 0.3055 -3.8175 1.7903 20 6 -0.6970 -4.7461 2.4258 21 6 -0.6039 -6.2326 2.0758 22 6 -1.7463 -5.3843 1.5133 23 7 1.1488 -4.1233 0.8502 24 8 1.8182 -3.1555 0.5557 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1249 1.4444 -0.1048 30 1 1.5936 1.9857 -0.8329 31 1 1.7647 1.9252 0.9378 32 1 3.8979 -0.0302 0.6935 33 1 3.6206 -1.7381 3.0807 34 1 3.8712 0.0241 3.0928 35 1 5.7881 -2.0382 1.9142 36 1 6.0385 -0.2760 1.9262 37 1 9.2600 -1.6419 3.0756 38 1 -1.0028 -4.4856 3.4391 39 1 0.1821 -6.5388 1.3855 40 1 -0.8484 -6.9503 2.8588 41 1 -2.7423 -5.5439 1.9264 42 1 -1.7118 -5.1322 0.4535 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179808347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:05 Heat of formation + Delta-G solvation = 77.087476 kcal Electronic energy + Delta-G solvation = -21885.018984 eV Core-core repulsion = 18675.724679 eV Total energy + Delta-G solvation = -3209.294305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.34565 -38.19400 -37.74495 -35.07157 -34.41614 -32.65466 -31.82143 -29.33930 -27.43736 -26.07362 -25.20403 -23.82061 -22.93746 -22.59805 -21.40781 -20.38650 -19.53483 -17.87265 -17.38398 -16.39361 -16.27595 -15.65952 -15.20905 -14.84840 -14.48933 -14.29776 -13.86944 -13.40618 -12.91136 -12.74035 -12.49203 -12.31921 -12.18294 -12.13918 -11.96884 -11.75586 -11.40805 -11.27648 -11.14463 -10.97270 -10.92104 -10.88959 -10.73464 -10.64431 -10.47115 -10.08822 -9.61037 -9.40259 -9.16853 -8.38430 -8.16164 -6.01345 -4.04214 1.36148 2.27960 3.06583 3.31779 3.37876 3.40735 3.47425 3.63601 4.07464 4.37150 4.48578 4.58541 4.61902 4.69027 4.75094 4.83128 5.12458 5.31726 5.34890 5.35750 5.37414 5.48150 5.51496 5.53631 5.68732 5.71373 5.80528 5.87553 5.90358 5.91250 6.10059 6.13527 6.16276 6.16552 6.28900 6.87406 7.20509 7.59936 7.69086 7.85097 8.02970 8.39336 8.40456 9.02506 9.59811 11.09990 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.004472 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.575837 B = 6259.009050 C = 7744.030778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.150 4.150 4 C 0.178 3.822 5 H 0.090 0.910 6 N -0.683 5.683 7 C 0.064 3.936 8 C 0.028 3.972 9 C -0.523 4.523 10 H 0.054 0.946 11 C 0.059 3.941 12 N -0.892 5.892 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.216 3.784 18 N -0.488 5.488 19 C 0.193 3.807 20 C -0.074 4.074 21 C -0.159 4.159 22 C -0.159 4.159 23 N -0.391 5.391 24 O 0.097 5.903 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.354 0.646 33 H 0.055 0.945 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.017 0.983 37 H 0.261 0.739 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.364 0.025 -6.016 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.208 4.208 4 C 0.065 3.935 5 H 0.107 0.893 6 N -0.318 5.318 7 C -0.064 4.064 8 C -0.010 4.010 9 C -0.562 4.562 10 H 0.072 0.928 11 C -0.142 4.142 12 N -0.531 5.531 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.005 4.005 18 N -0.222 5.222 19 C -0.080 4.080 20 C -0.094 4.094 21 C -0.197 4.197 22 C -0.197 4.197 23 N -0.098 5.098 24 O 0.039 5.961 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.177 0.823 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.151 0.849 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.386 -1.424 -6.192 20.400 hybrid contribution 0.554 0.850 1.356 1.694 sum -18.831 -0.574 -4.835 19.451 Atomic orbital electron populations 1.21829 0.94348 1.01783 1.02344 1.21339 0.96394 0.96770 0.97216 1.21888 1.01772 0.94565 1.02533 1.20053 0.90613 0.82921 0.99917 0.89255 1.60405 1.00708 1.50424 1.20289 1.22307 0.99505 0.98868 0.85692 1.19044 0.86894 0.97898 0.97137 1.21145 0.92723 1.49992 0.92361 0.92786 1.24980 0.97220 0.95240 0.96773 1.69969 1.04663 1.49550 1.28907 0.86594 0.78386 0.78327 0.84702 1.20644 1.21152 1.19888 1.28791 0.90474 0.94182 0.87062 1.71807 1.17100 1.09108 1.24158 1.24667 0.97966 0.90520 0.94808 1.20004 0.97495 0.92087 0.99830 1.23069 1.01281 0.91595 1.03759 1.23050 0.94572 1.02722 0.99348 1.74560 1.07853 1.09221 1.18153 1.85338 1.46732 1.14352 1.49716 0.92008 0.91988 0.93231 0.89303 0.91618 0.91664 0.92196 0.82339 0.92648 0.95661 0.95538 0.96459 0.92945 0.84888 0.87751 0.87543 0.87571 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.89 37.16 0.33 -1.13 16 2 C -0.10 -1.06 2.62 -90.61 -0.24 -1.30 16 3 C -0.15 -1.38 8.90 37.16 0.33 -1.05 16 4 C 0.18 2.52 2.18 -68.86 -0.15 2.37 16 5 H 0.09 1.25 7.84 -51.93 -0.41 0.85 16 6 N -0.68 -11.44 6.27 -107.95 -0.68 -12.11 16 7 C 0.06 1.32 5.39 -3.83 -0.02 1.30 16 8 C 0.03 0.71 5.27 -27.88 -0.15 0.57 16 9 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 10 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 13 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 17 C 0.22 3.51 5.65 -13.06 -0.07 3.44 16 18 N -0.49 -8.02 11.54 -9.87 -0.11 -8.14 16 19 C 0.19 3.04 7.74 -156.37 -1.21 1.83 16 20 C -0.07 -0.89 6.33 -91.77 -0.58 -1.47 16 21 C -0.16 -1.60 10.14 -26.73 -0.27 -1.88 16 22 C -0.16 -1.48 10.23 -26.73 -0.27 -1.75 16 23 N -0.39 -6.72 11.77 30.90 0.36 -6.35 16 24 O 0.10 1.71 11.31 18.10 0.20 1.92 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.58 7.09 -51.93 -0.37 0.21 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.62 6.60 -51.93 -0.34 0.28 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.35 5.30 6.55 -39.29 -0.26 5.05 16 33 H 0.05 1.22 7.97 -51.93 -0.41 0.80 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.13 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.10 1.20 7.91 -51.93 -0.41 0.79 16 40 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -31.75 350.66 -8.75 -40.50 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.81 Total: 0.87 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -2.71 Total: -12.62 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.31 Total: -52.69 kcal Atomic # 8 Polarization: 1.71 SS G_CDS: 0.20 Total: 1.92 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.75 -8.75 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179808347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.592 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds