Wall clock time and date at job start Tue Mar 31 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47116 * 2 1 4 4 C 1.53004 * 109.47017 * 119.99923 * 2 1 3 5 5 H 1.09006 * 109.46891 * 295.78598 * 4 2 1 6 6 N 1.46904 * 109.46899 * 175.79015 * 4 2 1 7 7 C 1.46901 * 110.99884 * 153.78354 * 6 4 2 8 8 C 1.52995 * 109.47102 * 175.05930 * 7 6 4 9 9 C 1.50703 * 109.47403 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37869 * 120.00509 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99925 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00241 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47178 * 90.00193 * 13 11 9 15 15 H 1.48498 * 109.47042 * 209.99837 * 13 11 9 16 16 H 1.48496 * 109.47202 * 330.00042 * 13 11 9 17 17 C 1.50692 * 109.46995 * 55.78828 * 4 2 1 18 18 N 1.31135 * 126.54889 * 254.70792 * 17 4 2 19 19 C 1.34497 * 105.60937 * 179.97438 * 18 17 4 20 20 C 1.50704 * 126.28263 * 180.12940 * 19 18 17 21 21 C 1.52997 * 117.49727 * 188.91179 * 20 19 18 22 22 C 1.52999 * 60.00119 * 252.51036 * 21 20 19 23 23 N 1.29941 * 107.43120 * 0.35165 * 19 18 17 24 24 O 1.21303 * 110.24729 * 359.78033 * 23 19 18 25 25 H 1.08992 * 109.47344 * 299.99900 * 1 2 3 26 26 H 1.08998 * 109.46901 * 60.00091 * 1 2 3 27 27 H 1.09001 * 109.46758 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47804 * 240.00126 * 2 1 3 29 29 H 1.08997 * 109.47232 * 185.85439 * 3 2 1 30 30 H 1.08994 * 109.46669 * 305.85721 * 3 2 1 31 31 H 1.09001 * 109.46593 * 65.85324 * 3 2 1 32 32 H 1.00897 * 111.00022 * 29.83029 * 6 4 2 33 33 H 1.09000 * 109.47106 * 55.05897 * 7 6 4 34 34 H 1.09004 * 109.47325 * 295.05769 * 7 6 4 35 35 H 1.08999 * 109.47567 * 299.99886 * 8 7 6 36 36 H 1.09000 * 109.47167 * 60.00005 * 8 7 6 37 37 H 0.97001 * 120.00125 * 179.97438 * 12 11 9 38 38 H 1.08999 * 115.55223 * 334.61786 * 20 19 18 39 39 H 1.08995 * 117.50072 * 359.97438 * 21 20 19 40 40 H 1.09000 * 117.49790 * 145.02493 * 21 20 19 41 41 H 1.08998 * 117.49978 * 252.51160 * 22 21 20 42 42 H 1.08999 * 117.52104 * 107.47803 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7396 -0.1656 2.1377 6 7 3.5055 -0.8099 1.1995 7 6 4.0737 -0.8999 2.5512 8 6 5.5855 -1.1142 2.4557 9 6 6.1685 -1.2059 3.8424 10 1 5.5249 -1.1203 4.7054 11 6 7.5233 -1.4000 4.0092 12 7 8.3068 -1.5057 2.9582 13 14 8.2460 -1.5129 5.7280 14 1 8.2399 -2.9290 6.1756 15 1 9.6412 -1.0047 5.7127 16 1 7.4314 -0.6951 6.6622 17 6 1.4543 -2.1087 1.3025 18 7 0.4949 -2.5214 2.0955 19 6 0.3055 -3.8175 1.7903 20 6 -0.6970 -4.7461 2.4258 21 6 -0.6039 -6.2326 2.0758 22 6 -1.7463 -5.3843 1.5133 23 7 1.1488 -4.1233 0.8502 24 8 1.8182 -3.1555 0.5557 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1249 1.4444 -0.1048 30 1 1.5936 1.9857 -0.8329 31 1 1.7647 1.9252 0.9378 32 1 3.8979 -0.0302 0.6935 33 1 3.6206 -1.7381 3.0807 34 1 3.8712 0.0241 3.0928 35 1 5.7881 -2.0382 1.9142 36 1 6.0385 -0.2760 1.9262 37 1 9.2600 -1.6419 3.0756 38 1 -1.0028 -4.4856 3.4391 39 1 0.1821 -6.5388 1.3855 40 1 -0.8484 -6.9503 2.8588 41 1 -2.7423 -5.5439 1.9264 42 1 -1.7118 -5.1322 0.4535 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179808347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:05 Heat of formation + Delta-G solvation = 55.779877 kcal Electronic energy + Delta-G solvation = -21885.942951 eV Core-core repulsion = 18675.724679 eV Total energy + Delta-G solvation = -3210.218272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.60214 -39.37241 -38.66443 -36.35067 -35.95119 -34.46057 -33.09278 -31.12244 -28.28959 -27.54912 -26.32341 -25.54845 -24.16478 -23.37428 -22.81242 -21.81216 -20.61444 -19.14485 -18.66513 -18.39942 -17.49317 -16.71946 -16.59647 -16.21086 -16.01692 -15.41525 -15.22504 -14.60779 -14.27497 -14.17906 -13.68337 -13.57074 -13.32560 -13.20888 -13.09316 -12.97162 -12.86569 -12.59612 -12.53012 -12.33224 -12.19470 -12.07095 -12.00730 -11.83587 -11.63923 -11.53900 -11.40657 -11.23855 -10.67287 -10.58075 -9.60770 -8.21747 -6.33104 0.09698 1.09186 1.39170 1.40426 1.51426 1.84174 2.33828 2.41206 2.74299 2.95582 3.12038 3.28918 3.60294 3.65268 3.76696 3.92738 3.94800 4.16287 4.26258 4.31963 4.39194 4.52510 4.61536 4.63138 4.65224 4.78942 4.82683 4.87902 4.93160 4.96912 4.99841 5.01639 5.12439 5.13546 5.29504 5.37745 5.41719 5.62550 5.71509 5.96032 6.18108 6.40394 6.83357 7.13707 7.36114 8.90245 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.004472 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.575837 B = 6259.009050 C = 7744.030778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.147 4.147 4 C 0.181 3.819 5 H 0.096 0.904 6 N -0.689 5.689 7 C 0.086 3.914 8 C 0.035 3.965 9 C -0.547 4.547 10 H 0.058 0.942 11 C 0.004 3.996 12 N -0.929 5.929 13 Si 0.964 3.036 14 H -0.276 1.276 15 H -0.279 1.279 16 H -0.262 1.262 17 C 0.214 3.786 18 N -0.500 5.500 19 C 0.194 3.806 20 C -0.102 4.102 21 C -0.155 4.155 22 C -0.136 4.136 23 N -0.413 5.413 24 O 0.071 5.929 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.029 0.971 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.365 0.635 33 H 0.038 0.962 34 H 0.039 0.961 35 H -0.010 1.010 36 H 0.004 0.996 37 H 0.264 0.736 38 H 0.147 0.853 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.015 0.601 -5.091 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C -0.205 4.205 4 C 0.068 3.932 5 H 0.114 0.886 6 N -0.325 5.325 7 C -0.043 4.043 8 C -0.003 4.003 9 C -0.585 4.585 10 H 0.076 0.924 11 C -0.194 4.194 12 N -0.569 5.569 13 Si 0.788 3.212 14 H -0.202 1.202 15 H -0.204 1.204 16 H -0.186 1.186 17 C -0.007 4.007 18 N -0.235 5.235 19 C -0.078 4.078 20 C -0.122 4.122 21 C -0.193 4.193 22 C -0.174 4.174 23 N -0.124 5.124 24 O 0.018 5.982 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.048 0.952 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.189 0.811 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.008 0.992 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.164 0.836 39 H 0.103 0.897 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.034 -0.817 -5.290 21.705 hybrid contribution 1.024 0.643 1.026 1.586 sum -20.010 -0.173 -4.265 20.460 Atomic orbital electron populations 1.21788 0.93337 1.00863 1.03695 1.21339 0.97079 0.97435 0.95129 1.21890 1.01550 0.93279 1.03734 1.20262 0.88555 0.82344 1.02050 0.88621 1.60169 1.02646 1.51504 1.18178 1.21841 0.96010 0.98704 0.87736 1.18875 0.90415 0.95423 0.95571 1.21581 0.93379 1.50044 0.93501 0.92412 1.25917 0.97707 0.94630 1.01173 1.70096 1.05085 1.50304 1.31375 0.85473 0.77753 0.78518 0.79462 1.20207 1.20387 1.18592 1.29249 0.90350 0.94541 0.86605 1.71824 1.17548 1.09642 1.24442 1.25421 0.97708 0.90783 0.93929 1.20335 0.98359 0.92571 1.00932 1.23148 1.01147 0.90874 1.04084 1.23159 0.95450 1.00362 0.98469 1.74548 1.08867 1.09447 1.19572 1.85298 1.47489 1.14885 1.50540 0.91536 0.89745 0.95219 0.89634 0.92079 0.89530 0.91734 0.81050 0.94348 0.94309 0.99173 0.97780 0.92688 0.83566 0.89716 0.84860 0.84340 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.89 71.98 0.64 -1.93 16 2 C -0.09 -1.85 2.62 -10.79 -0.03 -1.88 16 3 C -0.15 -2.40 8.90 71.98 0.64 -1.75 16 4 C 0.18 5.05 2.18 44.17 0.10 5.15 16 5 H 0.10 2.59 7.84 -2.38 -0.02 2.57 16 6 N -0.69 -23.27 6.27 -495.44 -3.11 -26.38 16 7 C 0.09 3.57 5.39 86.30 0.47 4.04 16 8 C 0.03 1.84 5.27 29.85 0.16 2.00 16 9 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 10 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 11 C 0.00 0.24 5.46 84.65 0.46 0.70 16 12 N -0.93 -56.79 13.29 21.44 0.28 -56.51 16 13 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 16 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 17 C 0.21 7.04 5.65 88.38 0.50 7.54 16 18 N -0.50 -16.53 11.54 -303.22 -3.50 -20.03 16 19 C 0.19 6.16 7.74 138.46 1.07 7.24 16 20 C -0.10 -2.34 6.33 -11.54 -0.07 -2.41 16 21 C -0.15 -2.91 10.14 30.59 0.31 -2.60 16 22 C -0.14 -2.27 10.23 30.59 0.31 -1.95 16 23 N -0.41 -14.63 11.77 -60.33 -0.71 -15.34 16 24 O 0.07 2.62 11.31 74.83 0.85 3.46 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.03 0.66 7.09 -2.39 -0.02 0.65 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.06 6.60 -2.39 -0.02 1.04 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.37 10.90 6.55 -89.70 -0.59 10.31 16 33 H 0.04 1.72 7.97 -2.39 -0.02 1.70 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.15 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.08 1.95 7.91 -2.39 -0.02 1.93 16 40 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -70.08 350.66 1.05 -69.03 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.42 Total: 16.20 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.79 Total: -17.04 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -7.03 Total: -118.26 kcal Atomic # 8 Polarization: 2.62 SS G_CDS: 0.85 Total: 3.46 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.08 1.05 -69.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179808347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.812 kcal (2) G-P(sol) polarization free energy of solvation -70.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds