Wall clock time and date at job start Tue Mar 31 2020 03:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 6 6 H 1.07998 * 120.00049 * 239.99769 * 5 3 2 7 7 C 1.37881 * 119.99925 * 59.99507 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99556 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47324 * 90.00474 * 9 7 5 11 11 H 1.48504 * 109.46894 * 210.00251 * 9 7 5 12 12 H 1.48498 * 109.47557 * 330.00047 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 14 14 C 1.34777 * 119.99525 * 274.99614 * 13 3 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 3 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 14 19 19 C 1.39872 * 126.03739 * 264.68703 * 18 17 16 20 20 N 1.30838 * 108.19881 * 179.81663 * 19 18 17 21 21 N 1.40083 * 108.20653 * 0.44346 * 20 19 18 22 22 C 1.46497 * 126.03716 * 179.73632 * 21 20 19 23 23 C 1.34944 * 107.92621 * 359.71533 * 21 20 19 24 24 C 1.50702 * 126.12949 * 179.97438 * 23 21 20 25 25 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 26 26 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 27 27 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 29 29 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 30 30 H 0.97001 * 119.99544 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00580 * 95.00360 * 13 3 2 32 32 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 33 33 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 34 34 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 35 35 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 36 36 H 1.08003 * 125.89643 * 0.02562 * 19 18 17 37 37 H 1.08998 * 109.47444 * 269.97600 * 22 21 20 38 38 H 1.09000 * 109.47272 * 29.97802 * 22 21 20 39 39 H 1.08997 * 109.46955 * 149.97415 * 22 21 20 40 40 H 1.08994 * 109.47181 * 270.02912 * 24 23 21 41 41 H 1.09003 * 109.46705 * 30.03273 * 24 23 21 42 42 H 1.09004 * 109.46857 * 150.02497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5539 -0.3518 -0.7598 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0722 -0.6889 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3397 2.6319 0.4343 16 6 0.0340 3.3328 2.6566 17 6 -1.3871 3.8842 2.5250 18 6 -1.7879 4.5531 3.8145 19 6 -2.5141 3.9652 4.8554 20 7 -2.6622 4.8546 5.8036 21 7 -2.0428 6.0414 5.3910 22 6 -1.9798 7.2908 6.1533 23 6 -1.5140 5.8303 4.1675 24 6 -0.7549 6.8370 3.3419 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8292 -0.0604 -2.9502 31 1 2.2718 2.1233 1.9978 32 1 0.0680 2.6060 3.4684 33 1 0.7223 4.1501 2.8717 34 1 -1.4211 4.6108 1.7132 35 1 -2.0755 3.0668 2.3099 36 1 -2.8852 2.9511 4.8747 37 1 -2.8434 7.9094 5.9092 38 1 -1.9836 7.0662 7.2199 39 1 -1.0654 7.8264 5.8981 40 1 -1.4515 7.3879 2.7101 41 1 -0.2362 7.5316 4.0027 42 1 -0.0279 6.3193 2.7161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183789986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:18 Heat of formation + Delta-G solvation = -2.656276 kcal Electronic energy + Delta-G solvation = -21673.554618 eV Core-core repulsion = 18460.802364 eV Total energy + Delta-G solvation = -3212.752254 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.24136 -40.55473 -36.98663 -35.20593 -34.23031 -34.12770 -32.81505 -31.57295 -29.10543 -27.87948 -27.46984 -25.25375 -24.27608 -21.94979 -21.60592 -20.93719 -20.13445 -18.80316 -17.58676 -17.12504 -17.03524 -16.54781 -16.50927 -15.95045 -15.17707 -15.16421 -14.61497 -14.56414 -14.31343 -13.95893 -13.66228 -13.54073 -13.40799 -13.21687 -13.13347 -13.02601 -12.94408 -12.79520 -12.64718 -12.57053 -12.14107 -12.05563 -11.88468 -11.54071 -11.38250 -10.99981 -10.58032 -10.42679 -10.15390 -9.51844 -9.17585 -8.12943 -6.30019 0.92809 1.46254 1.46584 1.57010 1.69671 1.81589 2.01318 2.40313 2.83004 3.16337 3.68030 3.83287 4.08252 4.19713 4.27727 4.38514 4.41761 4.45547 4.53931 4.62353 4.65252 4.72833 4.74500 4.77091 4.83821 4.88490 5.09305 5.12094 5.16836 5.30911 5.35074 5.42986 5.49437 5.60865 5.70864 5.75499 5.85428 6.00113 6.19140 6.22465 6.77466 6.79536 7.12202 7.37937 7.72691 8.92218 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.028188 B = 0.003390 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.107182 B = 8258.224834 C = 8841.716981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.710 5.710 14 C 0.496 3.504 15 O -0.589 6.589 16 C -0.119 4.119 17 C -0.010 4.010 18 C -0.251 4.251 19 C 0.046 3.954 20 N -0.334 5.334 21 N -0.380 5.380 22 C 0.091 3.909 23 C 0.087 3.913 24 C -0.094 4.094 25 H 0.047 0.953 26 H 0.025 0.975 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.402 0.598 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.195 0.805 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 12.764 15.791 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.188 1.188 13 N -0.359 5.359 14 C 0.284 3.716 15 O -0.471 6.471 16 C -0.159 4.159 17 C -0.049 4.049 18 C -0.262 4.262 19 C -0.139 4.139 20 N -0.156 5.156 21 N -0.163 5.163 22 C -0.049 4.049 23 C -0.041 4.041 24 C -0.152 4.152 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.212 0.788 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.781 13.038 16.226 22.222 hybrid contribution 1.297 -0.558 -0.973 1.715 sum -6.484 12.480 15.253 20.747 Atomic orbital electron populations 1.21670 0.96894 0.99020 1.00401 1.21785 0.93845 0.99373 1.01058 1.18314 0.93409 0.89092 0.81774 0.98453 1.21618 0.91671 1.38698 1.06548 0.91113 1.25772 1.03204 0.94498 0.95102 1.70058 1.36982 1.38497 1.09876 0.85395 0.79309 0.78834 0.77087 1.19841 1.21347 1.18818 1.46316 1.15989 1.56273 1.17344 1.21349 0.81431 0.78327 0.90542 1.90649 1.52370 1.61218 1.42837 1.21629 0.98770 1.01523 0.93964 1.19376 0.94171 0.98982 0.92402 1.19891 1.11473 0.94779 1.00104 1.24089 0.98382 1.00049 0.91339 1.77273 1.21218 0.92726 1.24363 1.48717 1.42587 1.11127 1.13874 1.22156 1.04898 0.80702 0.97117 1.21311 0.98274 0.96815 0.87702 1.20599 0.99474 0.96377 0.98719 0.93433 0.95600 0.93821 0.91275 0.94253 0.92698 0.76352 0.87869 0.87759 0.91864 0.91827 0.78819 0.89705 0.89030 0.87052 0.89212 0.88803 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.16 2.24 44.25 0.10 14.26 16 4 H 0.00 -0.15 7.58 -2.38 -0.02 -0.17 16 5 C -0.55 -28.80 8.73 25.60 0.22 -28.58 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.01 0.76 5.29 84.66 0.45 1.21 16 8 N -0.92 -52.50 11.29 21.45 0.24 -52.26 16 9 Si 0.97 41.92 29.54 68.60 2.03 43.94 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.71 -28.58 5.02 -446.08 -2.24 -30.82 16 14 C 0.50 18.63 6.40 87.66 0.56 19.19 16 15 O -0.59 -27.01 13.12 -3.04 -0.04 -27.05 16 16 C -0.12 -3.10 5.68 29.85 0.17 -2.93 16 17 C -0.01 -0.27 4.54 29.85 0.14 -0.13 16 18 C -0.25 -5.95 5.35 -20.14 -0.11 -6.06 16 19 C 0.05 1.11 11.96 85.24 1.02 2.13 16 20 N -0.33 -8.49 12.58 -57.02 -0.72 -9.21 16 21 N -0.38 -7.74 4.01 -356.04 -1.43 -9.17 16 22 C 0.09 0.97 11.27 127.77 1.44 2.41 16 23 C 0.09 1.78 6.93 41.41 0.29 2.06 16 24 C -0.09 -1.29 9.80 71.24 0.70 -0.59 16 25 H 0.05 2.05 5.64 -2.39 -0.01 2.03 16 26 H 0.02 1.25 7.85 -2.39 -0.02 1.23 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 3.84 5.95 -2.38 -0.01 3.83 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.58 16 31 H 0.40 13.70 8.54 -92.71 -0.79 12.91 16 32 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.10 2.30 7.77 -2.39 -0.02 2.28 16 34 H 0.06 1.76 7.97 -2.39 -0.02 1.74 16 35 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 36 H 0.20 3.80 8.06 -2.91 -0.02 3.77 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 0.59 7.05 -2.39 -0.02 0.57 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 0.81 7.08 -2.39 -0.02 0.79 16 42 H 0.08 1.29 7.51 -2.38 -0.02 1.27 16 Total: -1.00 -71.24 343.04 3.82 -67.42 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.22 Total: 24.95 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.75 Total: -7.81 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.14 Total: -101.45 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.04 Total: -27.05 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -71.24 3.82 -67.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183789986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.765 kcal (2) G-P(sol) polarization free energy of solvation -71.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds