Wall clock time and date at job start Tue Mar 31 2020 03:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 H 1.09001 * 109.46812 * 54.99771 * 3 2 1 5 5 C 1.50703 * 109.47304 * 175.00079 * 3 2 1 6 6 H 1.07994 * 119.99399 * 120.00023 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31512 * 119.99734 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00111 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47123 * 89.99915 * 9 7 5 11 11 H 1.48498 * 109.47161 * 209.99603 * 9 7 5 12 12 H 1.48497 * 109.47329 * 329.99749 * 9 7 5 13 13 N 1.46506 * 109.46831 * 295.00216 * 3 2 1 14 14 C 1.34774 * 120.00251 * 84.99772 * 13 3 2 15 15 O 1.21603 * 119.99592 * 0.02562 * 14 13 3 16 16 C 1.47426 * 120.00057 * 179.97438 * 14 13 3 17 17 C 1.41295 * 126.41190 * 0.02562 * 16 14 13 18 18 N 1.30453 * 108.01947 * 179.97438 * 17 16 14 19 19 N 1.39934 * 108.89675 * 359.97438 * 18 17 16 20 20 C 1.46505 * 125.75187 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47155 * 254.97997 * 20 19 18 22 22 C 1.52997 * 109.47058 * 14.98238 * 20 19 18 23 23 C 1.53006 * 109.46956 * 134.98102 * 20 19 18 24 24 C 1.34257 * 108.49327 * 359.75314 * 19 18 17 25 25 H 1.08998 * 109.46677 * 299.99780 * 1 2 3 26 26 H 1.09000 * 109.46863 * 60.00110 * 1 2 3 27 27 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47359 * 240.00028 * 2 1 3 29 29 H 1.09000 * 109.47312 * 119.99601 * 2 1 3 30 30 H 0.97007 * 120.00011 * 180.02562 * 8 7 5 31 31 H 0.97006 * 119.99584 * 264.99701 * 13 3 2 32 32 H 1.07994 * 125.99131 * 359.94685 * 17 16 14 33 33 H 1.08991 * 109.47393 * 59.99950 * 21 20 19 34 34 H 1.09001 * 109.47126 * 180.02562 * 21 20 19 35 35 H 1.09007 * 109.47128 * 300.00057 * 21 20 19 36 36 H 1.08994 * 109.47213 * 59.99954 * 22 20 19 37 37 H 1.09001 * 109.46851 * 179.97438 * 22 20 19 38 38 H 1.09000 * 109.46666 * 299.99557 * 22 20 19 39 39 H 1.09001 * 109.47232 * 59.99542 * 23 20 19 40 40 H 1.08996 * 109.47164 * 180.02562 * 23 20 19 41 41 H 1.09002 * 109.46957 * 299.99961 * 23 20 19 42 42 H 1.08005 * 126.29256 * 180.23991 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 5.4540 0.8797 1.3358 9 14 3.0964 0.1091 2.5701 10 1 2.8757 -1.3271 2.2634 11 1 3.7937 0.2350 3.8751 12 1 1.7877 0.8074 2.6387 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3413 2.6325 -0.4317 16 6 0.0452 3.3239 -2.6266 17 6 0.8356 3.4402 -3.7920 18 7 0.1417 4.0872 -4.6873 19 7 -1.1074 4.4106 -4.1458 20 6 -2.1765 5.1381 -4.8343 21 6 -2.2471 6.5692 -4.2977 22 6 -1.8862 5.1703 -6.3362 23 6 -3.5128 4.4346 -4.5881 24 6 -1.1628 3.9374 -2.8906 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 5.8772 0.4813 2.1124 31 1 2.2719 2.1232 -1.9978 32 1 1.8385 3.0604 -3.9191 33 1 -1.2953 7.0704 -4.4731 34 1 -3.0428 7.1104 -4.8097 35 1 -2.4540 6.5462 -3.2277 36 1 -1.8359 4.1508 -6.7184 37 1 -2.6819 5.7112 -6.8485 38 1 -0.9343 5.6715 -6.5115 39 1 -3.7195 4.4116 -3.5181 40 1 -4.3081 4.9756 -5.1007 41 1 -3.4624 3.4151 -4.9704 42 1 -1.9979 4.0237 -2.2111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183802340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:02 Heat of formation + Delta-G solvation = 32.139134 kcal Electronic energy + Delta-G solvation = -22157.112880 eV Core-core repulsion = 18945.869468 eV Total energy + Delta-G solvation = -3211.243412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.39237 -38.78399 -36.90868 -35.15863 -32.33948 -31.59899 -30.74843 -29.78732 -27.83565 -27.72441 -27.31970 -23.47106 -22.43713 -22.10377 -20.20924 -19.69160 -19.16406 -17.68813 -16.59522 -15.71877 -15.54077 -15.31477 -14.79955 -14.67181 -14.28924 -14.08513 -13.71597 -13.32373 -12.94181 -12.82388 -12.65665 -12.52996 -12.50680 -12.23715 -12.14445 -11.82936 -11.70172 -11.54276 -11.53005 -11.01983 -10.88936 -10.73342 -10.56025 -9.86145 -9.49201 -9.48888 -9.16250 -9.03685 -8.69414 -8.52700 -7.91082 -6.15559 -4.17354 1.73380 2.26881 2.42499 3.28089 3.39687 3.45588 4.01794 4.07444 4.27825 4.36613 4.37079 4.47014 4.75293 4.87638 5.06755 5.13038 5.18470 5.26016 5.31452 5.37974 5.41392 5.49883 5.53906 5.63590 5.78395 5.90792 5.98833 6.06291 6.10200 6.27231 6.55785 6.74570 6.78530 6.91817 6.93603 7.05339 7.36863 7.41005 7.60934 7.65717 8.26122 8.65428 8.83427 9.10893 9.46248 10.96596 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.034459 B = 0.003914 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.371132 B = 7152.006117 C = 7519.018026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.244 3.756 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.894 5.894 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.582 3.418 15 O -0.562 6.562 16 C -0.280 4.280 17 C 0.078 3.922 18 N -0.299 5.299 19 N -0.357 5.357 20 C 0.178 3.822 21 C -0.161 4.161 22 C -0.143 4.143 23 C -0.162 4.162 24 C 0.118 3.882 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.029 0.971 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.266 0.734 31 H 0.393 0.607 32 H 0.189 0.811 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.463 7.830 -13.646 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.140 3.860 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.531 5.531 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.184 1.184 13 N -0.344 5.344 14 C 0.368 3.632 15 O -0.442 6.442 16 C -0.295 4.295 17 C -0.109 4.109 18 N -0.119 5.119 19 N -0.137 5.137 20 C 0.095 3.905 21 C -0.219 4.219 22 C -0.200 4.200 23 C -0.220 4.220 24 C -0.033 4.033 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.226 0.774 32 H 0.206 0.794 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -16.939 8.296 -14.126 23.565 hybrid contribution 0.005 -0.868 1.286 1.552 sum -16.934 7.428 -12.839 22.512 Atomic orbital electron populations 1.21873 0.96978 0.98864 1.02351 1.22281 0.94372 1.00023 1.00989 1.19126 0.95490 0.88428 0.82913 0.93307 1.21076 0.88705 1.39550 1.07768 0.90177 1.24830 0.94846 0.95195 0.97674 1.69874 1.08687 1.44686 1.29827 0.86903 0.81018 0.79952 0.80856 1.20285 1.22277 1.18408 1.45944 1.14648 1.55969 1.17793 1.17219 0.82344 0.78044 0.85610 1.90719 1.51979 1.61316 1.40220 1.20550 0.96367 1.14722 0.97855 1.24126 0.99839 0.96435 0.90531 1.77081 0.91600 1.20496 1.22707 1.48745 1.12301 1.42646 1.10030 1.20786 0.84411 0.91387 0.93882 1.22281 1.03426 0.94121 1.02073 1.21904 1.02982 1.03465 0.91672 1.22280 0.94889 1.01532 1.03336 1.22774 0.98959 0.94508 0.87060 0.92924 0.92765 0.95157 0.92325 0.92900 0.92365 0.77377 0.79381 0.91425 0.90330 0.91588 0.91557 0.91000 0.90861 0.91323 0.89997 0.91346 0.80225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.64 16 2 C -0.14 -3.12 5.11 -26.73 -0.14 -3.26 16 3 C 0.24 5.87 1.83 -69.08 -0.13 5.74 16 4 H 0.05 1.30 6.63 -51.93 -0.34 0.95 16 5 C -0.53 -14.52 9.31 -34.44 -0.32 -14.84 16 6 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 9 Si 0.88 21.97 24.41 -169.99 -4.15 17.82 16 10 H -0.28 -6.66 6.83 56.52 0.39 -6.27 16 11 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 13 N -0.70 -14.17 5.01 -56.00 -0.28 -14.45 16 14 C 0.58 11.39 6.38 -12.52 -0.08 11.31 16 15 O -0.56 -12.53 14.03 5.28 0.07 -12.45 16 16 C -0.28 -4.48 6.13 -105.07 -0.64 -5.12 16 17 C 0.08 1.11 11.50 -16.98 -0.20 0.92 16 18 N -0.30 -4.17 11.56 30.86 0.36 -3.81 16 19 N -0.36 -4.34 3.41 -48.10 -0.16 -4.50 16 20 C 0.18 1.52 1.23 -131.82 -0.16 1.36 16 21 C -0.16 -1.18 8.72 37.16 0.32 -0.85 16 22 C -0.14 -1.11 8.07 37.16 0.30 -0.81 16 23 C -0.16 -1.09 8.28 37.16 0.31 -0.79 16 24 C 0.12 1.60 10.39 -16.56 -0.17 1.43 16 25 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 26 H 0.05 1.10 5.64 -51.93 -0.29 0.81 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 1.25 3.21 -51.93 -0.17 1.09 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.39 7.08 7.49 -40.82 -0.31 6.78 16 32 H 0.19 2.24 7.50 -52.49 -0.39 1.85 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.65 8.03 -51.93 -0.42 0.24 16 39 H 0.07 0.46 7.34 -51.93 -0.38 0.08 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.18 2.13 7.52 -52.48 -0.39 1.73 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -32.79 334.55 -5.55 -38.34 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.51 Total: 5.34 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.69 Total: -5.44 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.69 Total: -48.65 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.15 Total: 17.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.79 -5.55 -38.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183802340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.477 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds