Wall clock time and date at job start Tue Mar 31 2020 03:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 H 1.09001 * 109.46812 * 54.99771 * 3 2 1 5 5 C 1.50703 * 109.47304 * 175.00079 * 3 2 1 6 6 H 1.07994 * 119.99399 * 120.00023 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31512 * 119.99734 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00111 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47123 * 89.99915 * 9 7 5 11 11 H 1.48498 * 109.47161 * 209.99603 * 9 7 5 12 12 H 1.48497 * 109.47329 * 329.99749 * 9 7 5 13 13 N 1.46506 * 109.46831 * 295.00216 * 3 2 1 14 14 C 1.34774 * 120.00251 * 84.99772 * 13 3 2 15 15 O 1.21603 * 119.99592 * 0.02562 * 14 13 3 16 16 C 1.47426 * 120.00057 * 179.97438 * 14 13 3 17 17 C 1.41295 * 126.41190 * 0.02562 * 16 14 13 18 18 N 1.30453 * 108.01947 * 179.97438 * 17 16 14 19 19 N 1.39934 * 108.89675 * 359.97438 * 18 17 16 20 20 C 1.46505 * 125.75187 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47155 * 254.97997 * 20 19 18 22 22 C 1.52997 * 109.47058 * 14.98238 * 20 19 18 23 23 C 1.53006 * 109.46956 * 134.98102 * 20 19 18 24 24 C 1.34257 * 108.49327 * 359.75314 * 19 18 17 25 25 H 1.08998 * 109.46677 * 299.99780 * 1 2 3 26 26 H 1.09000 * 109.46863 * 60.00110 * 1 2 3 27 27 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47359 * 240.00028 * 2 1 3 29 29 H 1.09000 * 109.47312 * 119.99601 * 2 1 3 30 30 H 0.97007 * 120.00011 * 180.02562 * 8 7 5 31 31 H 0.97006 * 119.99584 * 264.99701 * 13 3 2 32 32 H 1.07994 * 125.99131 * 359.94685 * 17 16 14 33 33 H 1.08991 * 109.47393 * 59.99950 * 21 20 19 34 34 H 1.09001 * 109.47126 * 180.02562 * 21 20 19 35 35 H 1.09007 * 109.47128 * 300.00057 * 21 20 19 36 36 H 1.08994 * 109.47213 * 59.99954 * 22 20 19 37 37 H 1.09001 * 109.46851 * 179.97438 * 22 20 19 38 38 H 1.09000 * 109.46666 * 299.99557 * 22 20 19 39 39 H 1.09001 * 109.47232 * 59.99542 * 23 20 19 40 40 H 1.08996 * 109.47164 * 180.02562 * 23 20 19 41 41 H 1.09002 * 109.46957 * 299.99961 * 23 20 19 42 42 H 1.08005 * 126.29256 * 180.23991 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 5.4540 0.8797 1.3358 9 14 3.0964 0.1091 2.5701 10 1 2.8757 -1.3271 2.2634 11 1 3.7937 0.2350 3.8751 12 1 1.7877 0.8074 2.6387 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3413 2.6325 -0.4317 16 6 0.0452 3.3239 -2.6266 17 6 0.8356 3.4402 -3.7920 18 7 0.1417 4.0872 -4.6873 19 7 -1.1074 4.4106 -4.1458 20 6 -2.1765 5.1381 -4.8343 21 6 -2.2471 6.5692 -4.2977 22 6 -1.8862 5.1703 -6.3362 23 6 -3.5128 4.4346 -4.5881 24 6 -1.1628 3.9374 -2.8906 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 5.8772 0.4813 2.1124 31 1 2.2719 2.1232 -1.9978 32 1 1.8385 3.0604 -3.9191 33 1 -1.2953 7.0704 -4.4731 34 1 -3.0428 7.1104 -4.8097 35 1 -2.4540 6.5462 -3.2277 36 1 -1.8359 4.1508 -6.7184 37 1 -2.6819 5.7112 -6.8485 38 1 -0.9343 5.6715 -6.5115 39 1 -3.7195 4.4116 -3.5181 40 1 -4.3081 4.9756 -5.1007 41 1 -3.4624 3.4151 -4.9704 42 1 -1.9979 4.0237 -2.2111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183802340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:02 Heat of formation + Delta-G solvation = 9.616363 kcal Electronic energy + Delta-G solvation = -22158.089541 eV Core-core repulsion = 18945.869468 eV Total energy + Delta-G solvation = -3212.220072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.46027 -40.35756 -37.70555 -36.95372 -34.35336 -33.29954 -31.78446 -31.00158 -29.29248 -28.37431 -28.28097 -25.02358 -24.01773 -23.24663 -21.87099 -20.98003 -20.42289 -19.10227 -18.12506 -17.42047 -16.84619 -16.52439 -16.16833 -15.89473 -15.66146 -15.09830 -14.96851 -14.71805 -14.58876 -13.99419 -13.83856 -13.68855 -13.54603 -13.21649 -13.20009 -13.10246 -12.91672 -12.74344 -12.73247 -12.38977 -12.30222 -12.21110 -11.81698 -11.77520 -11.33614 -11.19409 -10.82881 -10.64208 -10.50430 -9.83740 -9.50491 -8.34940 -6.40077 0.60923 1.22671 1.29763 1.36458 1.37608 1.48093 2.29278 2.61571 2.64280 3.01331 3.38543 3.74409 3.79555 3.86450 3.90060 4.18811 4.28645 4.36905 4.38945 4.50459 4.59410 4.64125 4.70932 4.72162 4.80101 4.83151 4.84454 4.93621 5.04196 5.09028 5.17447 5.22357 5.23924 5.29476 5.45377 5.49371 5.57369 5.74294 5.97541 6.19937 6.57339 6.62171 7.00353 7.23677 7.56990 8.80342 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.034459 B = 0.003914 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.371132 B = 7152.006117 C = 7519.018026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.252 3.748 4 H 0.023 0.977 5 C -0.533 4.533 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.935 5.935 9 Si 0.937 3.063 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.698 5.698 14 C 0.584 3.416 15 O -0.592 6.592 16 C -0.309 4.309 17 C 0.078 3.922 18 N -0.311 5.311 19 N -0.346 5.346 20 C 0.165 3.835 21 C -0.158 4.158 22 C -0.139 4.139 23 C -0.159 4.159 24 C 0.130 3.870 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.269 0.731 31 H 0.403 0.597 32 H 0.204 0.796 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.058 0.942 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.058 8.059 -14.718 25.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.041 0.959 5 C -0.571 4.571 6 H 0.074 0.926 7 C -0.170 4.170 8 N -0.574 5.574 9 Si 0.764 3.236 10 H -0.185 1.185 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.346 5.346 14 C 0.373 3.627 15 O -0.475 6.475 16 C -0.324 4.324 17 C -0.110 4.110 18 N -0.130 5.130 19 N -0.126 5.126 20 C 0.084 3.916 21 C -0.215 4.215 22 C -0.197 4.197 23 C -0.217 4.217 24 C -0.023 4.023 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.238 0.762 32 H 0.220 0.780 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.077 0.923 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -19.546 8.543 -15.256 26.226 hybrid contribution 0.768 -0.809 1.492 1.863 sum -18.779 7.733 -13.764 24.534 Atomic orbital electron populations 1.21751 0.95197 1.00427 1.01633 1.22202 0.95901 0.98482 1.00937 1.18772 0.93107 0.89627 0.83798 0.95926 1.21312 0.90411 1.38419 1.06934 0.92605 1.25549 0.95740 0.95900 0.99860 1.69983 1.10289 1.46270 1.30869 0.86026 0.79355 0.79967 0.78243 1.18513 1.22113 1.18372 1.45774 1.15543 1.56334 1.16938 1.17593 0.81398 0.77249 0.86422 1.90691 1.52662 1.62476 1.41633 1.20288 0.98134 1.17003 0.97010 1.24353 1.00475 0.96254 0.89879 1.77065 0.92445 1.20603 1.22914 1.49176 1.12328 1.41475 1.09593 1.21297 0.84157 0.92014 0.94133 1.22287 1.03758 0.93207 1.02292 1.21908 1.03419 1.03038 0.91296 1.22304 0.94370 1.01185 1.03846 1.23008 0.98517 0.93074 0.87675 0.94329 0.92802 0.92372 0.91435 0.93798 0.92134 0.76211 0.77974 0.92935 0.87277 0.91812 0.92683 0.87877 0.92365 0.91160 0.87068 0.92286 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.51 71.98 0.61 -4.64 16 2 C -0.14 -6.03 5.11 30.60 0.16 -5.87 16 3 C 0.25 12.17 1.83 44.25 0.08 12.25 16 4 H 0.02 1.23 6.63 -2.39 -0.02 1.21 16 5 C -0.53 -29.57 9.31 25.60 0.24 -29.33 16 6 H 0.06 3.29 7.98 -2.91 -0.02 3.27 16 7 C 0.03 1.66 5.45 84.65 0.46 2.12 16 8 N -0.94 -56.82 13.96 21.45 0.30 -56.52 16 9 Si 0.94 45.38 24.41 68.60 1.67 47.06 16 10 H -0.26 -11.81 6.83 99.48 0.68 -11.13 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 12 H -0.26 -12.46 6.53 99.48 0.65 -11.81 16 13 N -0.70 -28.54 5.01 -449.35 -2.25 -30.79 16 14 C 0.58 22.82 6.38 86.66 0.55 23.37 16 15 O -0.59 -26.32 14.03 -4.04 -0.06 -26.38 16 16 C -0.31 -9.69 6.13 -20.15 -0.12 -9.81 16 17 C 0.08 2.16 11.50 85.65 0.99 3.14 16 18 N -0.31 -8.32 11.56 -56.27 -0.65 -8.97 16 19 N -0.35 -7.85 3.41 -306.11 -1.04 -8.90 16 20 C 0.16 2.40 1.23 3.60 0.00 2.41 16 21 C -0.16 -1.88 8.72 71.98 0.63 -1.25 16 22 C -0.14 -1.83 8.07 71.98 0.58 -1.25 16 23 C -0.16 -1.65 8.28 71.98 0.60 -1.05 16 24 C 0.13 3.35 10.39 84.28 0.88 4.23 16 25 H 0.04 1.61 7.84 -2.39 -0.02 1.59 16 26 H 0.05 2.12 5.64 -2.39 -0.01 2.10 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 2.82 8.14 -2.39 -0.02 2.81 16 29 H 0.04 2.01 3.21 -2.39 -0.01 2.00 16 30 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 31 H 0.40 14.67 7.49 -92.70 -0.69 13.98 16 32 H 0.20 4.73 7.50 -2.91 -0.02 4.71 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 0.64 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.95 8.03 -2.39 -0.02 0.93 16 39 H 0.07 0.73 7.34 -2.39 -0.02 0.71 16 40 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.20 4.29 7.52 -2.91 -0.02 4.27 16 Total: -1.00 -71.25 334.55 3.86 -67.39 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.24 Total: 22.79 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 5.65 Total: -5.69 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.65 Total: -105.18 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.67 Total: 47.06 kcal Total: -71.25 3.86 -67.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183802340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.011 kcal (2) G-P(sol) polarization free energy of solvation -71.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds