Wall clock time and date at job start Tue Mar 31 2020 01:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47353 * 2 1 4 4 C 1.52997 * 109.47409 * 239.99674 * 2 1 3 5 5 C 1.50703 * 109.46919 * 119.99815 * 2 1 3 6 6 N 1.30837 * 125.90113 * 245.70785 * 5 2 1 7 7 N 1.40082 * 108.20669 * 180.25822 * 6 5 2 8 8 H 0.96999 * 126.03572 * 179.69978 * 7 6 5 9 9 C 1.34941 * 107.92676 * 359.71494 * 7 6 5 10 10 C 1.35318 * 107.74663 * 0.02562 * 9 7 6 11 11 C 1.50703 * 126.04247 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47317 * 262.14769 * 11 10 9 13 13 C 1.47958 * 110.99893 * 170.00046 * 12 11 10 14 14 C 1.53931 * 86.18035 * 222.41530 * 13 12 11 15 15 O 1.42904 * 113.73759 * 269.36289 * 14 13 12 16 16 C 1.50698 * 113.73403 * 138.07875 * 14 13 12 17 17 H 1.08000 * 120.00301 * 0.02562 * 16 14 13 18 18 C 1.37882 * 120.00237 * 180.02562 * 16 14 13 19 19 N 1.31515 * 119.99811 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00143 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47476 * 89.99636 * 20 18 16 22 22 H 1.48501 * 109.47114 * 209.99867 * 20 18 16 23 23 H 1.48496 * 109.47053 * 329.99410 * 20 18 16 24 24 C 1.47957 * 111.00142 * 70.63883 * 12 11 10 25 25 H 1.09001 * 109.47394 * 293.78204 * 1 2 3 26 26 H 1.09004 * 109.46904 * 53.77859 * 1 2 3 27 27 H 1.08998 * 109.47452 * 173.77942 * 1 2 3 28 28 H 1.09001 * 109.47350 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47302 * 299.99959 * 3 2 1 30 30 H 1.09007 * 109.47185 * 59.99917 * 3 2 1 31 31 H 1.09006 * 109.47249 * 300.00299 * 4 2 1 32 32 H 1.08997 * 109.47114 * 59.99782 * 4 2 1 33 33 H 1.08998 * 109.47344 * 180.02562 * 4 2 1 34 34 H 1.07999 * 126.13177 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.46697 * 142.14662 * 11 10 9 36 36 H 1.08996 * 109.46956 * 22.14896 * 11 10 9 37 37 H 1.09003 * 113.76183 * 108.10025 * 13 12 11 38 38 H 1.08996 * 113.86036 * 336.74748 * 13 12 11 39 39 H 0.96699 * 114.00402 * 180.02562 * 15 14 13 40 40 H 0.96998 * 120.00037 * 180.02562 * 19 18 16 41 41 H 1.09006 * 113.76110 * 23.26548 * 24 12 11 42 42 H 1.08995 * 113.76214 * 251.89986 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.6991 -0.1628 2.2141 7 7 2.9839 -1.1584 3.1575 8 1 3.4718 -1.0358 3.9868 9 6 2.4599 -2.3181 2.7086 10 6 1.8630 -2.0683 1.5202 11 6 1.1475 -3.0762 0.6581 12 7 2.0530 -3.5477 -0.3982 13 6 1.4740 -4.7051 -1.1153 14 6 2.8846 -5.3181 -1.0535 15 8 3.7012 -4.9972 -2.1815 16 6 2.8934 -6.7874 -0.7189 17 1 1.9626 -7.3082 -0.5491 18 6 4.0897 -7.4670 -0.6295 19 7 5.2232 -6.8331 -0.8367 20 14 4.1005 -9.2885 -0.2154 21 1 4.0289 -10.0816 -1.4688 22 1 5.3514 -9.6235 0.5115 23 1 2.9300 -9.6085 0.6404 24 6 3.1212 -4.4043 0.1625 25 1 -0.3634 0.4144 0.9404 26 1 -0.3633 0.6073 -0.8291 27 1 -0.3634 -1.0216 -0.1113 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2076 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 2.5083 -3.2743 3.2082 35 1 0.2721 -2.6107 0.2052 36 1 0.8335 -3.9209 1.2712 37 1 1.1400 -4.4729 -2.1266 38 1 0.7306 -5.2547 -0.5378 39 1 4.5882 -5.3807 -2.1468 40 1 6.0648 -7.3112 -0.7742 41 1 2.8601 -4.8649 1.1154 42 1 4.1033 -3.9317 0.1722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190979971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:11 Heat of formation + Delta-G solvation = 55.240625 kcal Electronic energy + Delta-G solvation = -23019.175371 eV Core-core repulsion = 19808.933715 eV Total energy + Delta-G solvation = -3210.241656 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 5.04 seconds Orbital eigenvalues (eV) -41.17507 -38.79700 -36.52526 -34.35580 -32.05677 -31.30323 -30.41932 -27.67774 -27.06580 -26.72636 -25.48012 -24.92697 -22.39089 -22.18311 -19.98904 -18.59398 -18.01251 -17.46855 -17.05262 -15.15260 -15.08380 -14.91229 -14.52082 -14.22498 -13.94155 -13.66044 -13.53212 -13.33580 -12.92210 -12.37264 -12.05762 -11.95271 -11.77560 -11.68441 -11.43942 -11.32828 -11.09938 -10.87741 -10.83002 -10.67743 -10.63733 -10.51533 -10.27570 -10.02894 -9.87796 -9.33882 -9.09789 -8.64909 -8.27823 -8.01610 -7.67462 -6.24733 -4.34855 2.15124 3.02625 3.10365 3.18978 3.26694 3.28864 4.25646 4.73457 4.90845 4.97771 5.07715 5.23545 5.28644 5.41730 5.50215 5.69685 5.78853 5.86720 5.97360 5.98747 6.06354 6.07517 6.13255 6.21188 6.31824 6.34421 6.38970 6.43044 6.44141 6.56058 6.67271 6.74525 6.93443 7.10077 7.14553 7.32577 7.41477 7.51039 7.78314 7.95575 8.01725 8.09065 8.67049 9.35236 9.69833 10.80398 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.004960 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.201101 B = 5643.944449 C = 6071.600561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 C -0.134 4.134 4 C -0.151 4.151 5 C 0.111 3.889 6 N -0.302 5.302 7 N -0.485 5.485 8 H 0.435 0.565 9 C 0.058 3.942 10 C -0.210 4.210 11 C 0.090 3.910 12 N -0.466 5.466 13 C 0.004 3.996 14 C 0.244 3.756 15 O -0.572 6.572 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.004 4.004 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.170 0.830 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.388 0.612 40 H 0.270 0.730 41 H 0.055 0.945 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 9.888 5.474 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 C -0.192 4.192 4 C -0.209 4.209 5 C -0.057 4.057 6 N -0.125 5.125 7 N -0.193 5.193 8 H 0.278 0.722 9 C -0.089 4.089 10 C -0.221 4.221 11 C -0.039 4.039 12 N -0.188 5.188 13 C -0.124 4.124 14 C 0.202 3.798 15 O -0.384 6.384 16 C -0.575 4.575 17 H 0.082 0.918 18 C -0.131 4.131 19 N -0.538 5.538 20 Si 0.728 3.272 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.133 4.133 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.188 0.812 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.243 0.757 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.250 11.846 5.411 14.445 hybrid contribution 0.415 -2.710 1.409 3.082 sum -5.835 9.136 6.820 12.807 Atomic orbital electron populations 1.21895 0.93890 1.02376 1.01351 1.18985 0.94970 0.94229 0.90576 1.21786 1.01361 0.94923 1.01096 1.22184 1.01478 1.03579 0.93616 1.22073 0.96150 0.92666 0.94769 1.77191 1.21607 1.12813 1.00875 1.46093 1.46666 1.06215 1.20292 0.72215 1.22360 0.97993 0.91601 0.96950 1.19824 1.10305 0.94851 0.97133 1.20994 0.95447 0.94847 0.92653 1.68564 1.07545 1.25155 1.17567 1.24166 0.98406 0.91082 0.98778 1.19746 0.86135 0.90920 0.82964 1.86037 1.30968 1.77411 1.43962 1.21679 0.93175 0.94696 1.47916 0.91751 1.25047 0.95282 0.98859 0.93889 1.69354 0.97850 1.36654 1.49992 0.86454 0.77572 0.84524 0.78629 1.20335 1.21067 1.19791 1.24569 0.95039 0.94222 0.99463 0.93116 0.92146 0.91806 0.92573 0.92728 0.92812 0.87556 0.93470 0.92997 0.81237 0.90646 0.94384 0.90691 0.91850 0.75702 0.91961 0.92709 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.34 37.16 0.31 -1.37 16 2 C 0.01 0.21 0.81 -155.66 -0.13 0.08 16 3 C -0.13 -1.75 7.96 37.15 0.30 -1.46 16 4 C -0.15 -2.37 8.19 37.16 0.30 -2.07 16 5 C 0.11 1.79 5.61 -82.40 -0.46 1.33 16 6 N -0.30 -4.87 12.00 33.67 0.40 -4.46 16 7 N -0.49 -6.60 7.36 30.44 0.22 -6.38 16 8 H 0.43 4.34 8.96 -182.61 -1.64 2.70 16 9 C 0.06 0.84 11.85 -17.23 -0.20 0.64 16 10 C -0.21 -3.39 4.97 -105.05 -0.52 -3.91 16 11 C 0.09 1.49 4.13 -4.98 -0.02 1.47 16 12 N -0.47 -9.17 3.91 -239.72 -0.94 -10.11 16 13 C 0.00 0.09 7.36 -2.77 -0.02 0.07 16 14 C 0.24 6.01 1.44 -90.84 -0.13 5.88 16 15 O -0.57 -15.30 13.49 -35.23 -0.48 -15.78 16 16 C -0.54 -14.00 8.62 -34.44 -0.30 -14.29 16 17 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.07 1.84 5.39 -17.82 -0.10 1.75 16 19 N -0.90 -23.88 11.08 55.43 0.61 -23.27 16 20 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.00 -0.09 6.82 -2.77 -0.02 -0.11 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.79 5.70 -51.93 -0.30 0.50 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.11 1.85 4.15 -51.93 -0.22 1.64 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.08 1.15 5.46 -51.93 -0.28 0.87 16 36 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 37 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.06 1.24 7.75 -51.93 -0.40 0.83 16 39 H 0.39 10.65 6.42 45.56 0.29 10.94 16 40 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.05 1.20 7.73 -51.93 -0.40 0.80 16 42 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -28.83 331.50 -8.30 -37.13 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -7.11 Total: 14.78 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -0.99 Total: -12.01 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.31 Total: -44.22 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.48 Total: -15.78 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.83 -8.30 -37.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190979971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.373 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.04 seconds