Wall clock time and date at job start Tue Mar 31 2020 01:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47353 * 2 1 4 4 C 1.52997 * 109.47409 * 239.99674 * 2 1 3 5 5 C 1.50703 * 109.46919 * 119.99815 * 2 1 3 6 6 N 1.30837 * 125.90113 * 245.70785 * 5 2 1 7 7 N 1.40082 * 108.20669 * 180.25822 * 6 5 2 8 8 H 0.96999 * 126.03572 * 179.69978 * 7 6 5 9 9 C 1.34941 * 107.92676 * 359.71494 * 7 6 5 10 10 C 1.35318 * 107.74663 * 0.02562 * 9 7 6 11 11 C 1.50703 * 126.04247 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47317 * 262.14769 * 11 10 9 13 13 C 1.47958 * 110.99893 * 170.00046 * 12 11 10 14 14 C 1.53931 * 86.18035 * 222.41530 * 13 12 11 15 15 O 1.42904 * 113.73759 * 269.36289 * 14 13 12 16 16 C 1.50698 * 113.73403 * 138.07875 * 14 13 12 17 17 H 1.08000 * 120.00301 * 0.02562 * 16 14 13 18 18 C 1.37882 * 120.00237 * 180.02562 * 16 14 13 19 19 N 1.31515 * 119.99811 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00143 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47476 * 89.99636 * 20 18 16 22 22 H 1.48501 * 109.47114 * 209.99867 * 20 18 16 23 23 H 1.48496 * 109.47053 * 329.99410 * 20 18 16 24 24 C 1.47957 * 111.00142 * 70.63883 * 12 11 10 25 25 H 1.09001 * 109.47394 * 293.78204 * 1 2 3 26 26 H 1.09004 * 109.46904 * 53.77859 * 1 2 3 27 27 H 1.08998 * 109.47452 * 173.77942 * 1 2 3 28 28 H 1.09001 * 109.47350 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47302 * 299.99959 * 3 2 1 30 30 H 1.09007 * 109.47185 * 59.99917 * 3 2 1 31 31 H 1.09006 * 109.47249 * 300.00299 * 4 2 1 32 32 H 1.08997 * 109.47114 * 59.99782 * 4 2 1 33 33 H 1.08998 * 109.47344 * 180.02562 * 4 2 1 34 34 H 1.07999 * 126.13177 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.46697 * 142.14662 * 11 10 9 36 36 H 1.08996 * 109.46956 * 22.14896 * 11 10 9 37 37 H 1.09003 * 113.76183 * 108.10025 * 13 12 11 38 38 H 1.08996 * 113.86036 * 336.74748 * 13 12 11 39 39 H 0.96699 * 114.00402 * 180.02562 * 15 14 13 40 40 H 0.96998 * 120.00037 * 180.02562 * 19 18 16 41 41 H 1.09006 * 113.76110 * 23.26548 * 24 12 11 42 42 H 1.08995 * 113.76214 * 251.89986 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.6991 -0.1628 2.2141 7 7 2.9839 -1.1584 3.1575 8 1 3.4718 -1.0358 3.9868 9 6 2.4599 -2.3181 2.7086 10 6 1.8630 -2.0683 1.5202 11 6 1.1475 -3.0762 0.6581 12 7 2.0530 -3.5477 -0.3982 13 6 1.4740 -4.7051 -1.1153 14 6 2.8846 -5.3181 -1.0535 15 8 3.7012 -4.9972 -2.1815 16 6 2.8934 -6.7874 -0.7189 17 1 1.9626 -7.3082 -0.5491 18 6 4.0897 -7.4670 -0.6295 19 7 5.2232 -6.8331 -0.8367 20 14 4.1005 -9.2885 -0.2154 21 1 4.0289 -10.0816 -1.4688 22 1 5.3514 -9.6235 0.5115 23 1 2.9300 -9.6085 0.6404 24 6 3.1212 -4.4043 0.1625 25 1 -0.3634 0.4144 0.9404 26 1 -0.3633 0.6073 -0.8291 27 1 -0.3634 -1.0216 -0.1113 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2076 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 2.5083 -3.2743 3.2082 35 1 0.2721 -2.6107 0.2052 36 1 0.8335 -3.9209 1.2712 37 1 1.1400 -4.4729 -2.1266 38 1 0.7306 -5.2547 -0.5378 39 1 4.5882 -5.3807 -2.1468 40 1 6.0648 -7.3112 -0.7742 41 1 2.8601 -4.8649 1.1154 42 1 4.1033 -3.9317 0.1722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190979971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:11 Heat of formation + Delta-G solvation = 35.156339 kcal Electronic energy + Delta-G solvation = -23020.046291 eV Core-core repulsion = 19808.933715 eV Total energy + Delta-G solvation = -3211.112576 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.35835 -40.48879 -37.64644 -36.20377 -34.05696 -32.70999 -31.58215 -29.30101 -28.07442 -27.91449 -27.17264 -26.64976 -23.78401 -23.53644 -21.19903 -20.38642 -19.28010 -19.11565 -18.43212 -17.05650 -16.75895 -16.26035 -15.83396 -15.59702 -15.45946 -15.10232 -14.99942 -14.52293 -14.05027 -13.93674 -13.76410 -13.31497 -13.26092 -13.01243 -12.89068 -12.81453 -12.60585 -12.43632 -12.28495 -12.19577 -11.95966 -11.86129 -11.79954 -11.67217 -11.16658 -11.08032 -10.59754 -10.25936 -10.04169 -9.47361 -9.22970 -8.19810 -6.37861 0.99540 1.43077 1.45760 1.54742 1.80590 2.06318 2.39709 3.01408 3.35534 3.64106 3.86860 4.10043 4.14753 4.20229 4.23006 4.33947 4.39134 4.55985 4.62858 4.67142 4.78153 4.81747 4.90746 4.95786 5.00835 5.03967 5.09751 5.15040 5.23200 5.25193 5.31303 5.32728 5.48277 5.52681 5.66140 5.77892 5.80592 5.92122 6.04754 6.47687 6.50545 6.68210 6.80953 7.35354 7.60464 8.83853 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.004960 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.201101 B = 5643.944449 C = 6071.600561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.012 3.988 3 C -0.128 4.128 4 C -0.144 4.144 5 C 0.100 3.900 6 N -0.324 5.324 7 N -0.475 5.475 8 H 0.450 0.550 9 C 0.065 3.935 10 C -0.237 4.237 11 C 0.095 3.905 12 N -0.462 5.462 13 C 0.015 3.985 14 C 0.215 3.785 15 O -0.586 6.586 16 C -0.555 4.555 17 H 0.066 0.934 18 C 0.027 3.973 19 N -0.921 5.921 20 Si 0.964 3.036 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.265 1.265 24 C 0.012 3.988 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.194 0.806 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.380 0.620 40 H 0.271 0.729 41 H 0.059 0.941 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 9.900 6.348 14.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.010 3.990 3 C -0.186 4.186 4 C -0.202 4.202 5 C -0.067 4.067 6 N -0.147 5.147 7 N -0.183 5.183 8 H 0.296 0.704 9 C -0.084 4.084 10 C -0.248 4.248 11 C -0.034 4.034 12 N -0.184 5.184 13 C -0.114 4.114 14 C 0.174 3.826 15 O -0.397 6.397 16 C -0.593 4.593 17 H 0.084 0.916 18 C -0.172 4.172 19 N -0.563 5.563 20 Si 0.789 3.211 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.190 1.190 24 C -0.117 4.117 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.210 0.790 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.234 0.766 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.658 11.883 6.302 15.478 hybrid contribution 0.872 -2.679 1.154 3.044 sum -6.786 9.204 7.456 13.651 Atomic orbital electron populations 1.21852 0.92045 1.02661 1.02383 1.19067 0.96404 0.94406 0.89118 1.21732 1.00250 0.94420 1.02176 1.22085 0.99551 1.03153 0.95414 1.22398 0.96051 0.92940 0.95305 1.77142 1.22183 1.13849 1.01563 1.46137 1.46063 1.05641 1.20495 0.70407 1.22737 0.96626 0.92476 0.96531 1.19914 1.11908 0.94943 0.98073 1.20984 0.95222 0.95206 0.91987 1.68526 1.07448 1.23990 1.18472 1.24088 0.96644 0.91182 0.99437 1.20177 0.88021 0.91126 0.83270 1.86024 1.30761 1.77527 1.45386 1.21964 0.93426 0.95727 1.48226 0.91616 1.25780 0.94930 1.02768 0.93755 1.69446 0.98278 1.38061 1.50473 0.85470 0.77693 0.79624 0.78307 1.20321 1.20867 1.18969 1.24244 0.94650 0.93980 0.98844 0.92759 0.90213 0.92075 0.94252 0.90710 0.92606 0.89136 0.91650 0.95799 0.78963 0.89095 0.93693 0.90552 0.90219 0.76615 0.91881 0.92317 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.34 71.98 0.60 -2.32 16 2 C 0.01 0.33 0.81 -52.93 -0.04 0.29 16 3 C -0.13 -3.18 7.96 71.98 0.57 -2.61 16 4 C -0.14 -4.45 8.19 71.98 0.59 -3.86 16 5 C 0.10 3.13 5.61 43.10 0.24 3.37 16 6 N -0.32 -10.12 12.00 -47.38 -0.57 -10.69 16 7 N -0.47 -12.22 7.36 -57.59 -0.42 -12.64 16 8 H 0.45 8.23 8.96 -213.33 -1.91 6.32 16 9 C 0.06 1.76 11.85 83.54 0.99 2.75 16 10 C -0.24 -7.35 4.97 -20.14 -0.10 -7.45 16 11 C 0.09 2.99 4.13 85.56 0.35 3.34 16 12 N -0.46 -17.92 3.91 -915.56 -3.58 -21.49 16 13 C 0.02 0.61 7.36 86.40 0.64 1.25 16 14 C 0.21 10.64 1.44 -10.90 -0.02 10.62 16 15 O -0.59 -32.05 13.49 -148.98 -2.01 -34.07 16 16 C -0.56 -28.86 8.62 25.60 0.22 -28.64 16 17 H 0.07 3.31 7.81 -2.91 -0.02 3.28 16 18 C 0.03 1.40 5.39 84.66 0.46 1.85 16 19 N -0.92 -49.54 11.08 21.45 0.24 -49.31 16 20 Si 0.96 40.88 29.54 68.60 2.03 42.90 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 24 C 0.01 0.55 6.82 86.41 0.59 1.14 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.38 5.70 -2.39 -0.01 1.37 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.09 3.09 4.15 -2.38 -0.01 3.08 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.19 4.20 8.06 -2.91 -0.02 4.18 16 35 H 0.09 2.59 5.46 -2.39 -0.01 2.58 16 36 H 0.04 1.36 7.69 -2.39 -0.02 1.35 16 37 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.08 2.97 7.75 -2.39 -0.02 2.95 16 39 H 0.38 21.56 6.42 -74.06 -0.48 21.08 16 40 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 41 H 0.06 2.55 7.73 -2.38 -0.02 2.53 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -61.52 331.50 -0.57 -62.09 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -1.35 Total: 43.46 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 5.09 Total: -20.26 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -4.33 Total: -94.13 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -2.01 Total: -34.07 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -61.52 -0.57 -62.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190979971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.246 kcal (2) G-P(sol) polarization free energy of solvation -61.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds