Wall clock time and date at job start Tue Mar 31 2020 01:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46722 * 2 1 4 4 C 1.52994 * 109.47173 * 119.99754 * 2 1 3 5 5 C 1.53000 * 109.47472 * 65.00062 * 4 2 1 6 6 N 1.46493 * 109.47637 * 179.97438 * 5 4 2 7 7 C 1.46494 * 120.00444 * 269.72749 * 6 5 4 8 8 C 1.50694 * 109.47248 * 270.27463 * 7 6 5 9 9 H 1.07999 * 119.99904 * 359.97438 * 8 7 6 10 10 C 1.37883 * 120.00385 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99650 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00268 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47003 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47185 * 120.00431 * 12 10 8 15 15 H 1.48507 * 109.47178 * 240.00326 * 12 10 8 16 16 C 1.34784 * 119.99864 * 90.00039 * 6 5 4 17 17 O 1.21279 * 119.99925 * 179.72608 * 16 6 5 18 18 C 1.50700 * 119.99961 * 359.72839 * 16 6 5 19 19 N 1.46497 * 109.47128 * 180.02562 * 18 16 6 20 20 C 1.34943 * 126.03868 * 125.00304 * 19 18 16 21 21 C 1.35318 * 107.74756 * 179.97438 * 20 19 18 22 22 C 1.39869 * 107.91874 * 359.97438 * 21 20 19 23 23 N 1.30838 * 108.20133 * 359.73987 * 22 21 20 24 24 H 1.09004 * 109.47373 * 299.99975 * 1 2 3 25 25 H 1.08994 * 109.47166 * 60.00305 * 1 2 3 26 26 H 1.09000 * 109.47012 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46825 * 240.00162 * 2 1 3 28 28 H 1.09002 * 109.47112 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47063 * 299.99551 * 3 2 1 30 30 H 1.09001 * 109.47885 * 60.00070 * 3 2 1 31 31 H 1.09002 * 109.47518 * 305.00065 * 4 2 1 32 32 H 1.08996 * 109.47181 * 185.00253 * 4 2 1 33 33 H 1.09002 * 109.46747 * 59.99531 * 5 4 2 34 34 H 1.08996 * 109.47074 * 300.00257 * 5 4 2 35 35 H 1.09003 * 109.47006 * 30.27410 * 7 6 5 36 36 H 1.09004 * 109.47665 * 150.27102 * 7 6 5 37 37 H 0.96998 * 120.00151 * 180.02562 * 11 10 8 38 38 H 1.09004 * 109.46932 * 300.00223 * 18 16 6 39 39 H 1.08997 * 109.47392 * 59.99562 * 18 16 6 40 40 H 1.08004 * 126.12840 * 359.94912 * 20 19 18 41 41 H 1.07995 * 126.03848 * 179.97438 * 21 20 19 42 42 H 1.07997 * 125.89826 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1954 1.1881 6 7 2.1242 -2.8861 2.3839 7 6 3.4500 -3.5093 2.3795 8 6 3.3335 -4.9346 1.9043 9 1 2.3683 -5.3362 1.6332 10 6 4.4591 -5.7260 1.8157 11 7 5.6343 -5.2370 2.1463 12 14 4.3148 -7.4925 1.2261 13 1 2.8942 -7.7974 0.9192 14 1 5.1363 -7.6747 0.0025 15 1 4.7991 -8.4102 2.2885 16 6 1.3519 -2.9530 3.4865 17 8 1.7545 -3.5291 4.4749 18 6 -0.0120 -2.3120 3.4912 19 7 -0.6459 -2.5221 4.7951 20 6 -1.1351 -1.5595 5.6043 21 6 -1.6348 -2.1628 6.7077 22 6 -1.4449 -3.5414 6.5677 23 7 -0.8575 -3.7584 5.4189 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6055 -0.2617 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 2.0699 -2.6549 0.3003 34 1 0.5491 -2.2724 1.1422 35 1 4.1092 -2.9560 1.7105 36 1 3.8616 -3.4952 3.3887 37 1 6.4263 -5.7936 2.0836 38 1 0.0884 -1.2428 3.3044 39 1 -0.6271 -2.7607 2.7112 40 1 -1.1287 -0.4976 5.4070 41 1 -2.0983 -1.6673 7.5479 42 1 -1.7372 -4.2967 7.2821 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264029580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:40 Heat of formation + Delta-G solvation = 10.075344 kcal Electronic energy + Delta-G solvation = -22196.018346 eV Core-core repulsion = 18983.818177 eV Total energy + Delta-G solvation = -3212.200169 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.06452 -40.62555 -38.00137 -36.14058 -34.79484 -34.12828 -31.01533 -30.61828 -29.46069 -27.96366 -27.78233 -24.97269 -24.37519 -22.09635 -21.88899 -20.81478 -20.03315 -18.70399 -18.31266 -18.01150 -17.01376 -16.54139 -16.20370 -15.91691 -15.55373 -15.03208 -14.74093 -14.58981 -14.46870 -14.29416 -14.16788 -13.73895 -13.60576 -13.36446 -13.13322 -13.01915 -12.85755 -12.72334 -12.57876 -12.29358 -12.14929 -11.90480 -11.55891 -11.46831 -11.44183 -11.36084 -10.94777 -10.68410 -10.23660 -9.47368 -9.44761 -8.26438 -6.40725 1.03845 1.31948 1.35258 1.46525 1.58612 1.69472 2.05970 2.26288 2.39311 3.03282 3.44810 3.70420 3.90580 4.02376 4.09411 4.10764 4.15823 4.25865 4.30354 4.60179 4.69334 4.76261 4.86212 4.90532 4.94665 4.96486 4.98268 5.13216 5.16039 5.19785 5.20188 5.25515 5.41198 5.50213 5.57069 5.61498 5.76923 5.81978 6.02438 6.17835 6.64990 6.71761 6.87874 7.23855 7.40253 8.80885 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.009900 B = 0.006617 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.741010 B = 4230.210694 C = 6527.678711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.125 4.125 5 C 0.103 3.897 6 N -0.598 5.598 7 C 0.266 3.734 8 C -0.541 4.541 9 H 0.050 0.950 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.965 3.035 13 H -0.269 1.269 14 H -0.265 1.265 15 H -0.283 1.283 16 C 0.482 3.518 17 O -0.578 6.578 18 C 0.125 3.875 19 N -0.373 5.373 20 C 0.053 3.947 21 C -0.281 4.281 22 C 0.023 3.977 23 N -0.332 5.332 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.026 0.974 36 H -0.008 1.008 37 H 0.267 0.733 38 H 0.165 0.835 39 H 0.128 0.872 40 H 0.218 0.782 41 H 0.176 0.824 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.682 15.501 -2.410 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.163 4.163 5 C -0.018 4.018 6 N -0.329 5.329 7 C 0.145 3.855 8 C -0.580 4.580 9 H 0.068 0.932 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.790 3.210 13 H -0.193 1.193 14 H -0.190 1.190 15 H -0.209 1.209 16 C 0.269 3.731 17 O -0.457 6.457 18 C 0.000 4.000 19 N -0.156 5.156 20 C -0.092 4.092 21 C -0.310 4.310 22 C -0.163 4.163 23 N -0.154 5.154 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.043 0.957 36 H 0.011 0.989 37 H 0.076 0.924 38 H 0.183 0.817 39 H 0.145 0.855 40 H 0.234 0.766 41 H 0.193 0.807 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -14.737 14.308 -2.838 20.735 hybrid contribution 0.538 -0.743 0.471 1.031 sum -14.198 13.565 -2.367 19.779 Atomic orbital electron populations 1.21929 0.93630 1.02355 1.02787 1.21043 0.97115 0.96181 0.96727 1.21816 1.00499 0.95475 1.02429 1.22041 1.00831 0.93911 0.99550 1.21916 1.00482 0.92422 0.87030 1.48208 1.17756 1.53679 1.13239 1.18672 0.79629 0.91998 0.95246 1.21719 0.93659 0.98169 1.44438 0.93159 1.25834 0.94768 1.03105 0.95366 1.70050 0.99209 1.38440 1.49072 0.85401 0.78432 0.78976 0.78213 1.19326 1.19005 1.20904 1.21262 0.87797 0.80972 0.83077 1.90720 1.74366 1.44899 1.35665 1.21764 0.90230 1.04915 0.83069 1.48321 1.46035 1.04572 1.16664 1.23332 0.97465 0.97015 0.91378 1.21870 1.13767 0.93035 1.02322 1.24429 0.97995 0.98621 0.95295 1.77506 1.21238 1.05262 1.11351 0.91427 0.91862 0.92200 0.91538 0.93788 0.91623 0.92041 0.90768 0.93659 0.91053 0.88008 0.95650 0.98942 0.92389 0.81738 0.85467 0.76577 0.80663 0.78556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.95 71.98 0.64 -1.23 16 2 C -0.09 -1.57 2.92 -10.80 -0.03 -1.60 16 3 C -0.14 -2.23 9.19 71.98 0.66 -1.57 16 4 C -0.12 -2.87 5.01 30.59 0.15 -2.72 16 5 C 0.10 2.98 4.97 86.38 0.43 3.41 16 6 N -0.60 -24.97 2.46 -826.18 -2.03 -27.00 16 7 C 0.27 14.57 5.16 85.63 0.44 15.01 16 8 C -0.54 -32.04 9.39 25.60 0.24 -31.80 16 9 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 10 C 0.01 0.49 5.46 84.66 0.46 0.95 16 11 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 12 Si 0.97 46.34 29.54 68.60 2.03 48.36 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 15 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 16 C 0.48 20.37 7.70 87.66 0.68 21.04 16 17 O -0.58 -31.93 15.30 -3.03 -0.05 -31.98 16 18 C 0.12 3.44 5.55 85.63 0.48 3.91 16 19 N -0.37 -11.66 3.39 -351.80 -1.19 -12.85 16 20 C 0.05 1.20 11.45 83.54 0.96 2.15 16 21 C -0.28 -6.56 10.80 21.99 0.24 -6.33 16 22 C 0.02 0.69 12.03 85.24 1.02 1.71 16 23 N -0.33 -12.79 11.66 -57.03 -0.66 -13.46 16 24 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.74 6.56 -2.39 -0.02 0.72 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.46 7.20 -2.39 -0.02 1.44 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 34 H 0.10 2.18 4.87 -2.39 -0.01 2.17 16 35 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 36 H -0.01 -0.48 7.42 -2.38 -0.02 -0.50 16 37 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.17 2.78 7.10 -2.38 -0.02 2.76 16 39 H 0.13 2.96 7.39 -2.39 -0.02 2.94 16 40 H 0.22 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 42 H 0.20 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -85.72 349.50 5.73 -79.99 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.99 Total: 10.99 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 6.37 Total: 2.95 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -3.60 Total: -110.32 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.05 Total: -31.98 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -85.72 5.73 -79.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264029580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.065 kcal (2) G-P(sol) polarization free energy of solvation -85.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds