Wall clock time and date at job start Tue Mar 31 2020 01:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34256 * 125.75876 * 2 1 4 4 C 1.38036 * 107.41704 * 179.76926 * 3 2 1 5 5 C 1.47434 * 126.41441 * 180.22742 * 4 3 2 6 6 O 1.21606 * 119.99583 * 342.05462 * 5 4 3 7 7 N 1.34772 * 120.00100 * 162.05418 * 5 4 3 8 8 C 1.46507 * 120.00076 * 4.45283 * 7 5 4 9 9 C 1.50696 * 109.46585 * 87.24938 * 8 7 5 10 10 H 1.07999 * 120.00602 * 0.02562 * 9 8 7 11 11 C 1.37888 * 119.99803 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99785 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99656 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47107 * 90.00175 * 13 11 9 15 15 H 1.48498 * 109.46548 * 210.00183 * 13 11 9 16 16 H 1.48502 * 109.46731 * 329.99912 * 13 11 9 17 17 C 1.46498 * 120.00070 * 184.45714 * 7 5 4 18 18 C 1.53007 * 109.47540 * 90.65548 * 17 7 5 19 19 C 1.52999 * 109.46952 * 64.62773 * 18 17 7 20 20 C 1.52998 * 109.47266 * 184.63149 * 18 17 7 21 21 C 1.52999 * 109.46838 * 304.63262 * 18 17 7 22 22 C 1.41292 * 107.17665 * 0.22539 * 4 3 2 23 23 N 1.30451 * 108.01909 * 0.02562 * 22 4 3 24 24 H 1.09003 * 109.46828 * 90.00041 * 1 2 3 25 25 H 1.08999 * 109.47958 * 210.00053 * 1 2 3 26 26 H 1.09001 * 109.47098 * 330.00541 * 1 2 3 27 27 H 1.07997 * 126.28698 * 0.03088 * 3 2 1 28 28 H 1.09001 * 109.46878 * 207.24664 * 8 7 5 29 29 H 1.08992 * 109.47048 * 327.24819 * 8 7 5 30 30 H 0.97006 * 119.99179 * 179.97438 * 12 11 9 31 31 H 1.09006 * 109.47458 * 210.65391 * 17 7 5 32 32 H 1.09003 * 109.47181 * 330.65589 * 17 7 5 33 33 H 1.09005 * 109.47190 * 60.00452 * 19 18 17 34 34 H 1.08995 * 109.47018 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.47714 * 300.00696 * 19 18 17 36 36 H 1.09005 * 109.47065 * 60.00000 * 20 18 17 37 37 H 1.09001 * 109.46611 * 179.97438 * 20 18 17 38 38 H 1.08998 * 109.47344 * 299.99974 * 20 18 17 39 39 H 1.09002 * 109.47289 * 65.26874 * 21 18 17 40 40 H 1.08995 * 109.47288 * 185.26914 * 21 18 17 41 41 H 1.09005 * 109.47043 * 305.27178 * 21 18 17 42 42 H 1.07997 * 125.99393 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6551 0.0053 5 6 4.7638 1.5059 0.0119 6 8 4.6836 2.6755 -0.3113 7 7 5.9533 0.9874 0.3762 8 6 6.0695 -0.4429 0.6714 9 6 6.3484 -1.1976 -0.6029 10 1 6.4312 -0.6651 -1.5388 11 6 6.4977 -2.5680 -0.5738 12 7 6.7406 -3.2267 -1.6859 13 14 6.3551 -3.4890 1.0452 14 1 4.9416 -3.8874 1.2652 15 1 7.2103 -4.7021 1.0015 16 1 6.8001 -2.6093 2.1558 17 6 7.1301 1.8541 0.4771 18 6 7.2386 2.4032 1.9011 19 6 7.4906 1.2501 2.8746 20 6 8.3988 3.3977 1.9772 21 6 5.9348 3.1109 2.2754 22 6 3.5311 -0.7575 0.0032 23 7 2.2826 -1.1358 -0.0035 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3635 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9166 2.1168 0.0005 28 1 6.8864 -0.6035 1.3750 29 1 5.1375 -0.8004 1.1089 30 1 6.8460 -4.1908 -1.6653 31 1 8.0258 1.2798 0.2401 32 1 7.0329 2.6820 -0.2251 33 1 8.4195 0.7458 2.6079 34 1 7.5683 1.6413 3.8889 35 1 6.6641 0.5415 2.8204 36 1 8.2192 4.2193 1.2837 37 1 8.4757 3.7892 2.9916 38 1 9.3276 2.8936 1.7106 39 1 5.1240 2.3833 2.3124 40 1 6.0447 3.5823 3.2520 41 1 5.7067 3.8714 1.5285 42 1 4.3918 -1.4099 0.0058 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264300634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:39 Heat of formation + Delta-G solvation = 53.676394 kcal Electronic energy + Delta-G solvation = -23245.710075 eV Core-core repulsion = 20035.400589 eV Total energy + Delta-G solvation = -3210.309486 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87150 -39.10560 -36.53661 -34.71490 -32.79398 -32.39878 -29.76921 -28.59712 -27.14307 -26.96863 -26.66669 -25.32406 -22.70980 -21.31814 -20.62057 -18.99969 -18.15770 -17.11598 -16.67464 -15.65697 -15.31526 -15.23788 -14.88650 -14.20637 -14.13379 -13.78576 -13.44804 -13.27784 -12.89397 -12.66887 -12.54121 -12.35050 -12.27485 -12.05313 -11.86401 -11.31711 -11.20416 -11.10749 -10.92476 -10.80818 -10.50554 -10.39649 -10.30460 -10.19515 -10.06674 -9.62105 -9.03843 -8.99470 -8.72785 -8.12835 -7.57877 -6.26149 -4.27631 2.05331 2.82139 2.93559 3.17832 3.24577 3.27534 3.96319 4.17565 4.22111 4.77213 5.04161 5.14266 5.17953 5.18270 5.19345 5.31590 5.41052 5.57276 5.78339 5.85856 5.87601 5.92312 6.06471 6.09288 6.15394 6.18718 6.29148 6.32500 6.43161 6.45291 6.48532 6.54226 6.69884 6.76606 6.80367 7.23080 7.27115 7.39523 7.48536 8.15551 8.19918 8.45399 8.84256 9.09778 9.30983 10.85694 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.009384 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.448654 B = 2982.985319 C = 4766.503264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.105 3.895 4 C -0.280 4.280 5 C 0.600 3.400 6 O -0.577 6.577 7 N -0.582 5.582 8 C 0.187 3.813 9 C -0.542 4.542 10 H 0.083 0.917 11 C 0.078 3.922 12 N -0.880 5.880 13 Si 0.854 3.146 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.259 1.259 17 C 0.131 3.869 18 C -0.085 4.085 19 C -0.144 4.144 20 C -0.135 4.135 21 C -0.132 4.132 22 C 0.083 3.917 23 N -0.318 5.318 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.179 0.821 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.268 0.732 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 8.245 8.158 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.158 5.158 3 C -0.046 4.046 4 C -0.295 4.295 5 C 0.390 3.610 6 O -0.459 6.459 7 N -0.310 5.310 8 C 0.066 3.934 9 C -0.581 4.581 10 H 0.101 0.899 11 C -0.127 4.127 12 N -0.517 5.517 13 Si 0.679 3.321 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.183 1.183 17 C 0.008 3.992 18 C -0.087 4.087 19 C -0.201 4.201 20 C -0.193 4.193 21 C -0.189 4.189 22 C -0.103 4.103 23 N -0.138 5.138 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.196 0.804 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.677 7.623 7.905 12.852 hybrid contribution 0.460 -0.096 0.636 0.790 sum -6.217 7.527 8.540 12.971 Atomic orbital electron populations 1.21803 0.74784 1.04129 1.03204 1.48457 1.06677 1.04430 1.56265 1.22745 0.90482 0.93155 0.98199 1.20331 0.93113 0.94205 1.21802 1.17115 0.82422 0.85607 0.75890 1.90644 1.86351 1.17580 1.51326 1.47518 1.07456 1.09803 1.66254 1.20450 0.98111 0.77374 0.97468 1.21459 1.49946 0.92109 0.94544 0.89931 1.24914 0.94271 0.97368 0.96121 1.69879 1.46710 1.08528 1.26549 0.87184 0.79524 0.80641 0.84764 1.19051 1.20483 1.18336 1.21379 0.88507 0.94410 0.94924 1.20971 0.95720 0.95533 0.96445 1.21991 1.02135 0.98066 0.97881 1.21779 0.97615 0.98668 1.01264 1.21822 0.96597 1.00358 1.00155 1.26214 0.95623 0.95473 0.92953 1.77296 1.02613 1.07128 1.26787 0.90905 0.89394 0.89794 0.80434 0.94102 0.94256 0.92131 0.90411 0.90550 0.92646 0.93540 0.91857 0.92688 0.92979 0.92670 0.93032 0.94020 0.91822 0.75001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.05 11.44 59.85 0.68 1.74 16 2 N -0.38 -6.22 3.98 -67.60 -0.27 -6.49 16 3 C 0.10 1.78 11.34 -16.57 -0.19 1.59 16 4 C -0.28 -5.77 5.87 -105.07 -0.62 -6.39 16 5 C 0.60 12.85 5.94 -12.52 -0.07 12.78 16 6 O -0.58 -12.86 14.93 5.27 0.08 -12.79 16 7 N -0.58 -12.03 1.99 -176.32 -0.35 -12.39 16 8 C 0.19 4.12 2.74 -5.19 -0.01 4.11 16 9 C -0.54 -14.01 8.01 -34.44 -0.28 -14.29 16 10 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 11 C 0.08 2.07 5.11 -17.82 -0.09 1.98 16 12 N -0.88 -25.16 13.96 55.43 0.77 -24.39 16 13 Si 0.85 19.35 26.87 -169.99 -4.57 14.79 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 17 C 0.13 2.38 4.60 -4.04 -0.02 2.36 16 18 C -0.09 -1.30 0.85 -154.51 -0.13 -1.44 16 19 C -0.14 -2.16 7.42 37.16 0.28 -1.88 16 20 C -0.14 -1.71 8.47 37.16 0.31 -1.40 16 21 C -0.13 -2.07 7.15 37.16 0.27 -1.80 16 22 C 0.08 1.83 9.47 -16.98 -0.16 1.67 16 23 N -0.32 -6.56 12.50 30.86 0.39 -6.18 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.18 2.41 8.06 -52.49 -0.42 1.99 16 28 H 0.04 0.88 5.09 -51.93 -0.26 0.61 16 29 H 0.04 0.88 4.03 -51.93 -0.21 0.67 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.08 1.41 8.08 -51.93 -0.42 0.99 16 32 H 0.08 1.43 7.34 -51.93 -0.38 1.05 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 1.06 5.90 -51.93 -0.31 0.75 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.89 6.71 -51.93 -0.35 0.54 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 1.07 7.27 -51.93 -0.38 0.69 16 42 H 0.23 5.56 2.64 -52.49 -0.14 5.42 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -31.05 328.17 -5.30 -36.35 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.26 Total: 7.11 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.03 Total: -0.96 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.54 Total: -49.44 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.57 Total: 14.79 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.05 -5.30 -36.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264300634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.023 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds