Wall clock time and date at job start Tue Mar 31 2020 01:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34256 * 125.75876 * 2 1 4 4 C 1.38036 * 107.41704 * 179.76926 * 3 2 1 5 5 C 1.47434 * 126.41441 * 180.22742 * 4 3 2 6 6 O 1.21606 * 119.99583 * 342.05462 * 5 4 3 7 7 N 1.34772 * 120.00100 * 162.05418 * 5 4 3 8 8 C 1.46507 * 120.00076 * 4.45283 * 7 5 4 9 9 C 1.50696 * 109.46585 * 87.24938 * 8 7 5 10 10 H 1.07999 * 120.00602 * 0.02562 * 9 8 7 11 11 C 1.37888 * 119.99803 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99785 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99656 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47107 * 90.00175 * 13 11 9 15 15 H 1.48498 * 109.46548 * 210.00183 * 13 11 9 16 16 H 1.48502 * 109.46731 * 329.99912 * 13 11 9 17 17 C 1.46498 * 120.00070 * 184.45714 * 7 5 4 18 18 C 1.53007 * 109.47540 * 90.65548 * 17 7 5 19 19 C 1.52999 * 109.46952 * 64.62773 * 18 17 7 20 20 C 1.52998 * 109.47266 * 184.63149 * 18 17 7 21 21 C 1.52999 * 109.46838 * 304.63262 * 18 17 7 22 22 C 1.41292 * 107.17665 * 0.22539 * 4 3 2 23 23 N 1.30451 * 108.01909 * 0.02562 * 22 4 3 24 24 H 1.09003 * 109.46828 * 90.00041 * 1 2 3 25 25 H 1.08999 * 109.47958 * 210.00053 * 1 2 3 26 26 H 1.09001 * 109.47098 * 330.00541 * 1 2 3 27 27 H 1.07997 * 126.28698 * 0.03088 * 3 2 1 28 28 H 1.09001 * 109.46878 * 207.24664 * 8 7 5 29 29 H 1.08992 * 109.47048 * 327.24819 * 8 7 5 30 30 H 0.97006 * 119.99179 * 179.97438 * 12 11 9 31 31 H 1.09006 * 109.47458 * 210.65391 * 17 7 5 32 32 H 1.09003 * 109.47181 * 330.65589 * 17 7 5 33 33 H 1.09005 * 109.47190 * 60.00452 * 19 18 17 34 34 H 1.08995 * 109.47018 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.47714 * 300.00696 * 19 18 17 36 36 H 1.09005 * 109.47065 * 60.00000 * 20 18 17 37 37 H 1.09001 * 109.46611 * 179.97438 * 20 18 17 38 38 H 1.08998 * 109.47344 * 299.99974 * 20 18 17 39 39 H 1.09002 * 109.47289 * 65.26874 * 21 18 17 40 40 H 1.08995 * 109.47288 * 185.26914 * 21 18 17 41 41 H 1.09005 * 109.47043 * 305.27178 * 21 18 17 42 42 H 1.07997 * 125.99393 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6551 0.0053 5 6 4.7638 1.5059 0.0119 6 8 4.6836 2.6755 -0.3113 7 7 5.9533 0.9874 0.3762 8 6 6.0695 -0.4429 0.6714 9 6 6.3484 -1.1976 -0.6029 10 1 6.4312 -0.6651 -1.5388 11 6 6.4977 -2.5680 -0.5738 12 7 6.7406 -3.2267 -1.6859 13 14 6.3551 -3.4890 1.0452 14 1 4.9416 -3.8874 1.2652 15 1 7.2103 -4.7021 1.0015 16 1 6.8001 -2.6093 2.1558 17 6 7.1301 1.8541 0.4771 18 6 7.2386 2.4032 1.9011 19 6 7.4906 1.2501 2.8746 20 6 8.3988 3.3977 1.9772 21 6 5.9348 3.1109 2.2754 22 6 3.5311 -0.7575 0.0032 23 7 2.2826 -1.1358 -0.0035 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3635 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9166 2.1168 0.0005 28 1 6.8864 -0.6035 1.3750 29 1 5.1375 -0.8004 1.1089 30 1 6.8460 -4.1908 -1.6653 31 1 8.0258 1.2798 0.2401 32 1 7.0329 2.6820 -0.2251 33 1 8.4195 0.7458 2.6079 34 1 7.5683 1.6413 3.8889 35 1 6.6641 0.5415 2.8204 36 1 8.2192 4.2193 1.2837 37 1 8.4757 3.7892 2.9916 38 1 9.3276 2.8936 1.7106 39 1 5.1240 2.3833 2.3124 40 1 6.0447 3.5823 3.2520 41 1 5.7067 3.8714 1.5285 42 1 4.3918 -1.4099 0.0058 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264300634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:39 Heat of formation + Delta-G solvation = 33.736004 kcal Electronic energy + Delta-G solvation = -23246.574755 eV Core-core repulsion = 20035.400589 eV Total energy + Delta-G solvation = -3211.174166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.34755 -40.62429 -37.96933 -36.37475 -34.35687 -34.05720 -31.24916 -30.35857 -28.40738 -28.08786 -27.95957 -26.67672 -24.56777 -22.84358 -22.04823 -20.44628 -19.53635 -19.12370 -18.17506 -17.17128 -16.83903 -16.69025 -16.25322 -15.92046 -15.53996 -15.12849 -14.90130 -14.65707 -14.52626 -14.09363 -13.91807 -13.59504 -13.44350 -13.33254 -13.06800 -12.84585 -12.68236 -12.52003 -12.48710 -12.27182 -12.07081 -11.86408 -11.80293 -11.63455 -11.52974 -11.45306 -10.86115 -10.60629 -10.40780 -9.62477 -9.21382 -8.32821 -6.38565 0.65756 1.28351 1.37584 1.39586 1.47045 1.62384 2.29959 2.40707 2.55206 3.01221 3.64768 3.92344 3.92832 3.95478 4.11588 4.20656 4.36854 4.44942 4.59028 4.63741 4.67134 4.70972 4.72753 4.78702 4.83747 4.87564 4.95594 4.98075 4.99740 5.10862 5.12165 5.26006 5.35708 5.41337 5.53593 5.57653 5.59765 5.84401 6.03760 6.21632 6.63187 6.65161 6.75786 7.22062 7.47563 8.83140 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.009384 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.448654 B = 2982.985319 C = 4766.503264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.365 5.365 3 C 0.129 3.871 4 C -0.318 4.318 5 C 0.595 3.405 6 O -0.593 6.593 7 N -0.586 5.586 8 C 0.202 3.798 9 C -0.535 4.535 10 H 0.031 0.969 11 C 0.029 3.971 12 N -0.932 5.932 13 Si 0.915 3.085 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.232 1.232 17 C 0.126 3.874 18 C -0.081 4.081 19 C -0.142 4.142 20 C -0.130 4.130 21 C -0.124 4.124 22 C 0.061 3.939 23 N -0.342 5.342 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.125 0.875 27 H 0.218 0.782 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.270 0.730 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 9.461 10.711 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.143 5.143 3 C -0.024 4.024 4 C -0.333 4.333 5 C 0.386 3.614 6 O -0.476 6.476 7 N -0.314 5.314 8 C 0.080 3.920 9 C -0.573 4.573 10 H 0.050 0.950 11 C -0.171 4.171 12 N -0.571 5.571 13 Si 0.737 3.263 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.155 1.155 17 C 0.003 3.997 18 C -0.082 4.082 19 C -0.199 4.199 20 C -0.188 4.188 21 C -0.181 4.181 22 C -0.124 4.124 23 N -0.163 5.163 24 H 0.108 0.892 25 H 0.114 0.886 26 H 0.143 0.857 27 H 0.234 0.766 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.976 8.848 10.472 15.861 hybrid contribution 0.706 -0.394 -0.273 0.853 sum -7.271 8.454 10.199 15.111 Atomic orbital electron populations 1.22378 0.70927 1.06664 1.05132 1.48884 1.08604 1.03102 1.53709 1.23244 0.89150 0.94685 0.95325 1.20462 0.94450 0.93671 1.24720 1.17332 0.82910 0.85628 0.75520 1.90614 1.86669 1.18113 1.52249 1.47559 1.08185 1.09456 1.66150 1.20211 0.98541 0.77802 0.95459 1.21475 1.49270 0.92345 0.94226 0.95042 1.25678 0.93732 0.98144 0.99595 1.70029 1.48929 1.08906 1.29231 0.86199 0.79576 0.79496 0.81034 1.18760 1.20343 1.15469 1.21553 0.87372 0.93615 0.97139 1.20941 0.96826 0.96289 0.94160 1.21963 1.01331 0.97502 0.99104 1.21740 0.96511 0.97910 1.02611 1.21728 0.95950 0.99417 1.00998 1.25788 0.95779 0.95968 0.94816 1.77170 1.02526 1.09280 1.27340 0.89213 0.88581 0.85662 0.76587 0.92926 0.93628 0.92086 0.91012 0.91681 0.92470 0.91098 0.93809 0.92687 0.90889 0.92024 0.95047 0.91526 0.93340 0.77421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 11.44 127.77 1.46 2.93 16 2 N -0.36 -11.09 3.98 -367.79 -1.46 -12.56 16 3 C 0.13 4.10 11.34 84.27 0.96 5.06 16 4 C -0.32 -13.12 5.87 -20.15 -0.12 -13.24 16 5 C 0.60 25.88 5.94 86.67 0.51 26.39 16 6 O -0.59 -26.61 14.93 -4.05 -0.06 -26.67 16 7 N -0.59 -24.75 1.99 -830.01 -1.65 -26.40 16 8 C 0.20 9.04 2.74 85.63 0.24 9.27 16 9 C -0.53 -28.91 8.01 25.60 0.21 -28.70 16 10 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 11 C 0.03 1.57 5.11 84.66 0.43 2.01 16 12 N -0.93 -55.64 13.96 21.45 0.30 -55.34 16 13 Si 0.92 40.26 26.87 68.60 1.84 42.11 16 14 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.23 -9.11 6.54 99.48 0.65 -8.46 16 17 C 0.13 4.63 4.60 86.38 0.40 5.03 16 18 C -0.08 -2.36 0.85 -52.18 -0.04 -2.40 16 19 C -0.14 -3.96 7.42 71.98 0.53 -3.42 16 20 C -0.13 -2.98 8.47 71.98 0.61 -2.37 16 21 C -0.12 -3.68 7.15 71.98 0.51 -3.17 16 22 C 0.06 2.74 9.47 85.65 0.81 3.55 16 23 N -0.34 -13.92 12.50 -56.27 -0.70 -14.62 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.22 5.06 8.06 -2.91 -0.02 5.03 16 28 H 0.05 2.23 5.09 -2.39 -0.01 2.22 16 29 H 0.05 2.05 4.03 -2.39 -0.01 2.04 16 30 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 31 H 0.07 2.66 8.08 -2.38 -0.02 2.64 16 32 H 0.06 2.50 7.34 -2.39 -0.02 2.49 16 33 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.39 5.90 -2.39 -0.01 1.37 16 36 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.03 1.04 6.71 -2.39 -0.02 1.03 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.58 7.27 -2.38 -0.02 1.56 16 42 H 0.21 10.29 2.64 -2.91 -0.01 10.28 16 Total: -1.00 -71.38 328.17 5.73 -65.65 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.96 Total: 26.89 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 6.51 Total: 0.94 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -3.52 Total: -108.92 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.06 Total: -26.67 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 1.84 Total: 42.11 kcal Total: -71.38 5.73 -65.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264300634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.385 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds