Wall clock time and date at job start Tue Mar 31 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47120 * 2 1 4 4 C 1.52989 * 109.47331 * 65.00045 * 3 2 1 5 5 C 1.52995 * 109.47406 * 184.99894 * 4 3 2 6 6 N 1.46501 * 109.46993 * 185.00243 * 3 2 1 7 7 C 1.35039 * 124.88453 * 275.02261 * 6 3 2 8 8 C 1.35364 * 107.22797 * 179.75885 * 7 6 3 9 9 C 1.41495 * 105.50327 * 0.36057 * 8 7 6 10 10 C 1.47719 * 126.51603 * 179.89631 * 9 8 7 11 11 O 1.21566 * 120.00044 * 359.71571 * 10 9 8 12 12 N 1.34780 * 119.99663 * 179.71393 * 10 9 8 13 13 C 1.46495 * 119.99388 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47981 * 34.99768 * 13 12 10 15 15 C 1.53002 * 109.46950 * 274.99377 * 13 12 10 16 16 C 1.50707 * 109.46964 * 155.00106 * 13 12 10 17 17 H 1.07997 * 120.00412 * 34.99750 * 16 13 12 18 18 C 1.37878 * 119.99902 * 215.00059 * 16 13 12 19 19 N 1.31508 * 120.00170 * 184.90962 * 18 16 13 20 20 Si 1.86807 * 119.99876 * 4.91088 * 18 16 13 21 21 H 1.48503 * 109.47044 * 84.83582 * 20 18 16 22 22 H 1.48503 * 109.47110 * 204.83208 * 20 18 16 23 23 H 1.48499 * 109.47347 * 324.83521 * 20 18 16 24 24 N 1.28465 * 124.88787 * 95.02210 * 6 3 2 25 25 H 1.09001 * 109.47196 * 300.00074 * 1 2 3 26 26 H 1.09006 * 109.47174 * 60.00156 * 1 2 3 27 27 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47196 * 239.99926 * 2 1 3 29 29 H 1.09000 * 109.46968 * 120.00220 * 2 1 3 30 30 H 1.09008 * 109.47053 * 304.99456 * 3 2 1 31 31 H 1.08997 * 109.47396 * 304.99742 * 4 3 2 32 32 H 1.09001 * 109.47460 * 64.99702 * 4 3 2 33 33 H 1.09008 * 109.47303 * 59.99654 * 5 4 3 34 34 H 1.09002 * 109.47430 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47384 * 299.99970 * 5 4 3 36 36 H 1.08005 * 126.38222 * 0.03459 * 7 6 3 37 37 H 1.08000 * 127.24771 * 180.23538 * 8 7 6 38 38 H 0.97000 * 120.00441 * 359.97438 * 12 10 9 39 39 H 1.09006 * 109.47034 * 175.03948 * 15 13 12 40 40 H 1.08993 * 109.47019 * 55.04390 * 15 13 12 41 41 H 1.09001 * 109.47478 * 295.03781 * 15 13 12 42 42 H 0.96999 * 120.00090 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3072 5 6 2.0354 3.6023 1.2558 6 7 3.5000 1.4442 -0.1204 7 6 4.3603 1.3161 0.9125 8 6 5.6122 1.3600 0.3995 9 6 5.4437 1.5300 -0.9951 10 6 6.5176 1.6381 -2.0036 11 8 7.6823 1.5875 -1.6590 12 7 6.2061 1.7928 -3.3057 13 6 7.2712 1.8995 -4.3058 14 1 8.1079 1.2644 -4.0150 15 6 7.7415 3.3526 -4.3970 16 6 6.7468 1.4562 -5.6474 17 1 5.7227 1.6619 -5.9217 18 6 7.5744 0.7879 -6.5246 19 7 7.1475 0.4864 -7.7313 20 14 9.3023 0.3108 -5.9988 21 1 9.2589 -0.9832 -5.2715 22 1 10.1653 0.1749 -7.1996 23 1 9.8564 1.3613 -5.1074 24 7 4.1461 1.5678 -1.2239 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6054 1.9815 -0.8419 31 1 0.5563 2.0471 1.4400 32 1 2.1408 1.6420 2.1426 33 1 1.5299 4.0870 0.4204 34 1 1.7475 4.0896 2.1874 35 1 3.1144 3.6819 1.1230 36 1 4.0983 1.1960 1.9534 37 1 6.5436 1.2837 0.9409 38 1 5.2768 1.8328 -3.5807 39 1 8.5922 3.4173 -5.0755 40 1 8.0384 3.7010 -3.4079 41 1 6.9290 3.9746 -4.7727 42 1 7.7299 0.0166 -8.3485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269239949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:49 Heat of formation + Delta-G solvation = 23.033855 kcal Electronic energy + Delta-G solvation = -21869.510169 eV Core-core repulsion = 18657.871923 eV Total energy + Delta-G solvation = -3211.638246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.56994 -38.65429 -37.16837 -34.76914 -32.40223 -32.25206 -31.47395 -30.62441 -29.36327 -26.69704 -25.23754 -23.41646 -23.28208 -22.18037 -20.41692 -19.99237 -19.26959 -17.91706 -17.09884 -16.03450 -15.94458 -15.26594 -15.11456 -14.48594 -14.45383 -14.01454 -13.73119 -13.63617 -13.30658 -12.88059 -12.73276 -12.59522 -12.44229 -12.27273 -12.23705 -11.96965 -11.48248 -11.36911 -11.25814 -11.04481 -11.00126 -10.75394 -10.65034 -10.51052 -9.81800 -9.28455 -9.12926 -9.05776 -8.85657 -8.63303 -7.95903 -6.16578 -4.19638 1.93312 2.38138 2.47010 3.32629 3.39669 3.47805 4.01079 4.06805 4.11899 4.34257 4.39343 4.54180 4.70056 4.73334 4.87262 4.93233 4.98503 5.17167 5.19735 5.25951 5.35867 5.47233 5.55477 5.62923 5.64540 5.70691 5.85530 5.86648 5.91100 5.98521 6.42012 6.60080 6.63343 6.76094 6.90357 7.02198 7.29164 7.46680 7.63267 8.06425 8.28796 8.70436 8.85268 9.08514 9.45801 10.95287 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.004002 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.312365 B = 6995.513240 C = 7488.890977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.148 3.852 4 C -0.135 4.135 5 C -0.158 4.158 6 N -0.279 5.279 7 C -0.025 4.025 8 C -0.183 4.183 9 C -0.006 4.006 10 C 0.587 3.413 11 O -0.554 6.554 12 N -0.688 5.688 13 C 0.230 3.770 14 H 0.051 0.949 15 C -0.147 4.147 16 C -0.528 4.528 17 H 0.079 0.921 18 C 0.081 3.919 19 N -0.890 5.890 20 Si 0.874 3.126 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.259 1.259 24 N -0.260 5.260 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.174 0.826 37 H 0.158 0.842 38 H 0.399 0.601 39 H 0.052 0.948 40 H 0.030 0.970 41 H 0.047 0.953 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.095 1.971 19.838 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.048 3.952 4 C -0.173 4.173 5 C -0.216 4.216 6 N -0.067 5.067 7 C -0.167 4.167 8 C -0.211 4.211 9 C -0.167 4.167 10 C 0.370 3.630 11 O -0.432 6.432 12 N -0.336 5.336 13 C 0.128 3.872 14 H 0.069 0.931 15 C -0.206 4.206 16 C -0.566 4.566 17 H 0.097 0.903 18 C -0.123 4.123 19 N -0.527 5.527 20 Si 0.700 3.300 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.184 1.184 24 N -0.095 5.095 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.191 0.809 37 H 0.176 0.824 38 H 0.233 0.767 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.106 1.966 18.991 23.738 hybrid contribution 0.976 -0.447 0.695 1.279 sum -13.130 1.519 19.686 23.712 Atomic orbital electron populations 1.21791 0.94024 1.02628 1.02349 1.21952 0.97020 0.94730 1.03814 1.21687 0.74485 0.98238 1.00829 1.21983 1.02837 0.96628 0.95834 1.21826 1.02416 0.95060 1.02248 1.45624 1.07017 1.50516 1.03567 1.22627 0.89624 1.09182 0.95313 1.21754 0.97790 1.08320 0.93282 1.22330 0.90478 1.08909 0.94990 1.17067 0.86360 0.77450 0.82145 1.90721 1.18886 1.52873 1.80729 1.46532 1.11746 1.69889 1.05436 1.19171 0.87358 0.93648 0.87044 0.93143 1.22216 1.00535 0.98906 0.98963 1.21022 1.00386 1.37701 0.97471 0.90283 1.24933 0.98407 0.94352 0.94628 1.69884 1.37168 1.39825 1.05815 0.86899 0.84577 0.80224 0.78260 1.19830 1.21223 1.18368 1.73572 1.06104 1.18954 1.10854 0.92133 0.92033 0.91856 0.90461 0.91064 0.87333 0.89027 0.90703 0.92248 0.92026 0.92207 0.80876 0.82433 0.76657 0.92853 0.95131 0.93384 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 37.16 0.36 -0.48 16 2 C -0.14 -1.05 5.73 -26.73 -0.15 -1.21 16 3 C 0.15 1.28 2.66 -67.94 -0.18 1.10 16 4 C -0.13 -0.81 4.94 -26.74 -0.13 -0.94 16 5 C -0.16 -1.13 9.77 37.15 0.36 -0.77 16 6 N -0.28 -3.47 2.81 -54.83 -0.15 -3.63 16 7 C -0.03 -0.29 9.76 -17.17 -0.17 -0.46 16 8 C -0.18 -2.77 10.81 -39.37 -0.43 -3.20 16 9 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16 10 C 0.59 13.00 7.79 -12.39 -0.10 12.90 16 11 O -0.55 -13.76 16.59 5.31 0.09 -13.67 16 12 N -0.69 -15.64 5.07 -55.92 -0.28 -15.92 16 13 C 0.23 5.82 2.22 -69.08 -0.15 5.67 16 14 H 0.05 1.37 4.73 -51.93 -0.25 1.13 16 15 C -0.15 -3.41 9.47 37.16 0.35 -3.06 16 16 C -0.53 -14.82 9.05 -34.44 -0.31 -15.13 16 17 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 18 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 19 N -0.89 -26.85 13.96 55.43 0.77 -26.07 16 20 Si 0.87 22.19 26.99 -169.99 -4.59 17.60 16 21 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.26 -6.48 6.82 56.52 0.39 -6.09 16 24 N -0.26 -4.28 11.67 33.42 0.39 -3.89 16 25 H 0.06 0.25 6.46 -51.93 -0.34 -0.08 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.11 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.09 0.38 6.34 -51.93 -0.33 0.05 16 32 H 0.07 0.39 6.80 -51.93 -0.35 0.04 16 33 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.56 7.09 -51.93 -0.37 0.19 16 36 H 0.17 1.32 7.04 -52.48 -0.37 0.95 16 37 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.40 8.51 8.32 -40.82 -0.34 8.18 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -33.52 345.19 -6.37 -39.89 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.57 Total: 4.53 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.23 Total: -4.03 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.73 Total: -49.51 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.59 Total: 17.60 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.52 -6.37 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269239949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.921 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds