Wall clock time and date at job start Tue Mar 31 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47120 * 2 1 4 4 C 1.52989 * 109.47331 * 65.00045 * 3 2 1 5 5 C 1.52995 * 109.47406 * 184.99894 * 4 3 2 6 6 N 1.46501 * 109.46993 * 185.00243 * 3 2 1 7 7 C 1.35039 * 124.88453 * 275.02261 * 6 3 2 8 8 C 1.35364 * 107.22797 * 179.75885 * 7 6 3 9 9 C 1.41495 * 105.50327 * 0.36057 * 8 7 6 10 10 C 1.47719 * 126.51603 * 179.89631 * 9 8 7 11 11 O 1.21566 * 120.00044 * 359.71571 * 10 9 8 12 12 N 1.34780 * 119.99663 * 179.71393 * 10 9 8 13 13 C 1.46495 * 119.99388 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47981 * 34.99768 * 13 12 10 15 15 C 1.53002 * 109.46950 * 274.99377 * 13 12 10 16 16 C 1.50707 * 109.46964 * 155.00106 * 13 12 10 17 17 H 1.07997 * 120.00412 * 34.99750 * 16 13 12 18 18 C 1.37878 * 119.99902 * 215.00059 * 16 13 12 19 19 N 1.31508 * 120.00170 * 184.90962 * 18 16 13 20 20 Si 1.86807 * 119.99876 * 4.91088 * 18 16 13 21 21 H 1.48503 * 109.47044 * 84.83582 * 20 18 16 22 22 H 1.48503 * 109.47110 * 204.83208 * 20 18 16 23 23 H 1.48499 * 109.47347 * 324.83521 * 20 18 16 24 24 N 1.28465 * 124.88787 * 95.02210 * 6 3 2 25 25 H 1.09001 * 109.47196 * 300.00074 * 1 2 3 26 26 H 1.09006 * 109.47174 * 60.00156 * 1 2 3 27 27 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47196 * 239.99926 * 2 1 3 29 29 H 1.09000 * 109.46968 * 120.00220 * 2 1 3 30 30 H 1.09008 * 109.47053 * 304.99456 * 3 2 1 31 31 H 1.08997 * 109.47396 * 304.99742 * 4 3 2 32 32 H 1.09001 * 109.47460 * 64.99702 * 4 3 2 33 33 H 1.09008 * 109.47303 * 59.99654 * 5 4 3 34 34 H 1.09002 * 109.47430 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47384 * 299.99970 * 5 4 3 36 36 H 1.08005 * 126.38222 * 0.03459 * 7 6 3 37 37 H 1.08000 * 127.24771 * 180.23538 * 8 7 6 38 38 H 0.97000 * 120.00441 * 359.97438 * 12 10 9 39 39 H 1.09006 * 109.47034 * 175.03948 * 15 13 12 40 40 H 1.08993 * 109.47019 * 55.04390 * 15 13 12 41 41 H 1.09001 * 109.47478 * 295.03781 * 15 13 12 42 42 H 0.96999 * 120.00090 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3072 5 6 2.0354 3.6023 1.2558 6 7 3.5000 1.4442 -0.1204 7 6 4.3603 1.3161 0.9125 8 6 5.6122 1.3600 0.3995 9 6 5.4437 1.5300 -0.9951 10 6 6.5176 1.6381 -2.0036 11 8 7.6823 1.5875 -1.6590 12 7 6.2061 1.7928 -3.3057 13 6 7.2712 1.8995 -4.3058 14 1 8.1079 1.2644 -4.0150 15 6 7.7415 3.3526 -4.3970 16 6 6.7468 1.4562 -5.6474 17 1 5.7227 1.6619 -5.9217 18 6 7.5744 0.7879 -6.5246 19 7 7.1475 0.4864 -7.7313 20 14 9.3023 0.3108 -5.9988 21 1 9.2589 -0.9832 -5.2715 22 1 10.1653 0.1749 -7.1996 23 1 9.8564 1.3613 -5.1074 24 7 4.1461 1.5678 -1.2239 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6054 1.9815 -0.8419 31 1 0.5563 2.0471 1.4400 32 1 2.1408 1.6420 2.1426 33 1 1.5299 4.0870 0.4204 34 1 1.7475 4.0896 2.1874 35 1 3.1144 3.6819 1.1230 36 1 4.0983 1.1960 1.9534 37 1 6.5436 1.2837 0.9409 38 1 5.2768 1.8328 -3.5807 39 1 8.5922 3.4173 -5.0755 40 1 8.0384 3.7010 -3.4079 41 1 6.9290 3.9746 -4.7727 42 1 7.7299 0.0166 -8.3485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269239949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:49 Heat of formation + Delta-G solvation = 0.224477 kcal Electronic energy + Delta-G solvation = -21870.499258 eV Core-core repulsion = 18657.871923 eV Total energy + Delta-G solvation = -3212.627335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.68263 -40.40041 -37.92457 -36.73265 -34.42013 -32.96137 -32.58570 -31.93457 -30.94068 -27.54817 -27.34126 -24.74425 -23.91129 -23.07316 -22.18367 -21.20880 -20.68583 -19.41423 -18.51751 -17.59435 -17.23885 -16.97370 -16.06887 -15.73976 -15.69217 -15.07704 -14.99316 -14.76371 -14.62049 -14.55553 -14.37144 -13.91913 -13.43167 -13.29599 -13.10956 -13.04596 -12.82202 -12.81690 -12.51831 -12.47734 -12.02910 -11.91059 -11.87482 -11.77117 -11.56330 -11.26802 -11.08926 -10.84614 -10.22842 -10.03641 -9.77124 -8.40498 -6.47532 0.61322 1.24664 1.29687 1.32991 1.44885 1.53663 2.26622 2.42307 2.48613 3.01864 3.30942 3.66416 3.77420 3.92510 3.95501 4.17660 4.27493 4.40213 4.42734 4.47438 4.56329 4.68394 4.71620 4.78568 4.80421 4.81477 4.84349 5.02124 5.05025 5.07033 5.12856 5.17542 5.31886 5.34163 5.39215 5.42194 5.43319 5.67923 5.96465 6.10500 6.55603 6.74954 7.03358 7.17869 7.35446 8.74757 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.004002 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.312365 B = 6995.513240 C = 7488.890977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.138 3.862 4 C -0.126 4.126 5 C -0.159 4.159 6 N -0.266 5.266 7 C 0.004 3.996 8 C -0.202 4.202 9 C -0.044 4.044 10 C 0.586 3.414 11 O -0.587 6.587 12 N -0.692 5.692 13 C 0.233 3.767 14 H 0.034 0.966 15 C -0.140 4.140 16 C -0.530 4.530 17 H 0.052 0.948 18 C 0.034 3.966 19 N -0.929 5.929 20 Si 0.928 3.072 21 H -0.274 1.274 22 H -0.272 1.272 23 H -0.253 1.253 24 N -0.279 5.279 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.224 0.776 37 H 0.163 0.837 38 H 0.404 0.596 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.055 0.945 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 1.976 22.870 27.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.039 3.961 4 C -0.164 4.164 5 C -0.216 4.216 6 N -0.055 5.055 7 C -0.139 4.139 8 C -0.230 4.230 9 C -0.203 4.203 10 C 0.372 3.628 11 O -0.467 6.467 12 N -0.340 5.340 13 C 0.130 3.870 14 H 0.052 0.948 15 C -0.199 4.199 16 C -0.568 4.568 17 H 0.071 0.929 18 C -0.166 4.166 19 N -0.567 5.567 20 Si 0.753 3.247 21 H -0.200 1.200 22 H -0.197 1.197 23 H -0.177 1.177 24 N -0.116 5.116 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.241 0.759 37 H 0.180 0.820 38 H 0.239 0.761 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.475 1.981 22.022 26.988 hybrid contribution 1.190 -0.433 -0.175 1.279 sum -14.284 1.548 21.847 26.149 Atomic orbital electron populations 1.21789 0.92131 1.03188 1.03299 1.21920 0.98556 0.93570 1.02966 1.22141 0.72090 0.99347 1.02528 1.22030 1.04700 0.95310 0.94334 1.21833 1.00650 0.96215 1.02939 1.46101 1.08517 1.48001 1.02832 1.23235 0.87953 1.05795 0.96894 1.21954 0.99679 1.09467 0.91907 1.21873 0.90415 1.12597 0.95387 1.17499 0.87012 0.76098 0.82206 1.90677 1.20537 1.54263 1.81247 1.46339 1.11346 1.70587 1.05698 1.18986 0.87347 0.94517 0.86182 0.94817 1.22106 1.00813 0.97483 0.99492 1.21152 0.99280 1.37527 0.98818 0.92948 1.25621 1.02016 0.94437 0.94551 1.69976 1.38801 1.41061 1.06887 0.86028 0.80581 0.79779 0.78355 1.20003 1.19711 1.17750 1.73493 1.05596 1.19590 1.12957 0.89797 0.92474 0.91550 0.93447 0.89794 0.88086 0.86279 0.88807 0.92983 0.90239 0.94668 0.75945 0.81978 0.76130 0.92699 0.94349 0.92584 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 71.98 0.70 -0.51 16 2 C -0.13 -1.71 5.73 30.59 0.18 -1.54 16 3 C 0.14 2.05 2.66 44.99 0.12 2.17 16 4 C -0.13 -0.97 4.94 30.59 0.15 -0.82 16 5 C -0.16 -1.80 9.77 71.98 0.70 -1.10 16 6 N -0.27 -6.14 2.81 -327.38 -0.92 -7.06 16 7 C 0.00 0.09 9.76 83.54 0.81 0.90 16 8 C -0.20 -5.89 10.81 22.41 0.24 -5.64 16 9 C -0.04 -1.65 7.13 42.46 0.30 -1.35 16 10 C 0.59 26.61 7.79 86.75 0.68 27.28 16 11 O -0.59 -29.75 16.59 -3.93 -0.07 -29.82 16 12 N -0.69 -32.35 5.07 -449.10 -2.28 -34.63 16 13 C 0.23 12.00 2.22 44.25 0.10 12.10 16 14 H 0.03 1.86 4.73 -2.39 -0.01 1.85 16 15 C -0.14 -6.50 9.47 71.98 0.68 -5.82 16 16 C -0.53 -30.53 9.05 25.60 0.23 -30.30 16 17 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 18 C 0.03 2.01 5.47 84.66 0.46 2.47 16 19 N -0.93 -57.05 13.96 21.45 0.30 -56.75 16 20 Si 0.93 46.13 26.99 68.60 1.85 47.98 16 21 H -0.27 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.25 -12.27 6.82 99.48 0.68 -11.59 16 24 N -0.28 -9.18 11.67 -48.17 -0.56 -9.75 16 25 H 0.08 0.32 6.46 -2.39 -0.02 0.30 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.12 0.36 6.34 -2.39 -0.02 0.34 16 32 H 0.09 0.43 6.80 -2.39 -0.02 0.42 16 33 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.03 0.57 7.09 -2.39 -0.02 0.56 16 36 H 0.22 2.18 7.04 -2.91 -0.02 2.16 16 37 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.40 17.93 8.32 -92.71 -0.77 17.16 16 39 H 0.05 2.48 8.14 -2.38 -0.02 2.47 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -75.15 345.19 3.90 -71.25 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.21 Total: 20.89 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 5.35 Total: -2.13 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.46 Total: -108.18 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.07 Total: -29.82 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.85 Total: 47.98 kcal Total: -75.15 3.90 -71.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269239949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.479 kcal (2) G-P(sol) polarization free energy of solvation -75.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds