Wall clock time and date at job start Tue Mar 31 2020 02:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47048 * 2 1 4 4 C 1.53006 * 109.46796 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47222 * 55.00434 * 4 3 2 6 6 C 1.52995 * 109.47083 * 294.99577 * 4 3 2 7 7 C 1.50709 * 109.46856 * 175.00045 * 4 3 2 8 8 O 1.21287 * 119.99706 * 359.97438 * 7 4 3 9 9 N 1.34774 * 119.99641 * 180.02562 * 7 4 3 10 10 C 1.40160 * 119.99582 * 179.97438 * 9 7 4 11 11 C 1.40415 * 125.97629 * 0.31868 * 10 9 7 12 12 C 1.35232 * 107.86655 * 180.16795 * 11 10 9 13 13 C 1.50703 * 126.06766 * 179.84998 * 12 11 10 14 14 N 1.34973 * 107.86541 * 359.58610 * 12 11 10 15 15 C 1.46500 * 125.97897 * 180.22982 * 14 12 11 16 16 C 1.50698 * 109.46965 * 89.99833 * 15 14 12 17 17 H 1.08000 * 120.00464 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99358 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00418 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99496 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47105 * 90.00179 * 20 18 16 22 22 H 1.48499 * 109.46684 * 210.00001 * 20 18 16 23 23 H 1.48496 * 109.47247 * 330.00058 * 20 18 16 24 24 N 1.31221 * 125.97288 * 180.02562 * 10 9 7 25 25 H 1.09003 * 109.47338 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46846 * 299.99878 * 1 2 3 27 27 H 1.09000 * 109.47180 * 60.00083 * 1 2 3 28 28 H 1.09001 * 109.46846 * 240.00122 * 2 1 3 29 29 H 1.09000 * 109.47180 * 119.99917 * 2 1 3 30 30 H 1.08994 * 109.47417 * 59.99985 * 3 2 1 31 31 H 1.09000 * 109.47062 * 299.99989 * 3 2 1 32 32 H 1.08997 * 109.47769 * 299.99965 * 6 4 3 33 33 H 1.09005 * 109.46923 * 60.00323 * 6 4 3 34 34 H 1.09008 * 109.46901 * 180.02562 * 6 4 3 35 35 H 0.96997 * 120.00207 * 359.97438 * 9 7 4 36 36 H 1.08000 * 126.06356 * 0.05444 * 11 10 9 37 37 H 1.09002 * 109.47152 * 269.68932 * 13 12 11 38 38 H 1.09001 * 109.46980 * 149.69032 * 13 12 11 39 39 H 1.09004 * 109.47113 * 29.69013 * 13 12 11 40 40 H 1.08994 * 109.46840 * 210.00162 * 15 14 12 41 41 H 1.09004 * 109.46443 * 329.99889 * 15 14 12 42 42 H 0.96998 * 120.00265 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0723 2.8579 -0.1245 8 8 3.2841 3.7762 -0.2048 9 7 5.3974 3.1031 -0.1470 10 6 5.8645 4.4195 -0.2627 11 6 5.0681 5.5721 -0.3567 12 6 5.8928 6.6392 -0.4570 13 6 5.4684 8.0798 -0.5826 14 7 7.1634 6.1856 -0.4188 15 6 8.3735 7.0080 -0.4928 16 6 8.7903 7.4147 0.8971 17 1 8.2119 7.0924 1.7504 18 6 9.9100 8.1982 1.0794 19 7 10.6140 8.5911 0.0404 20 14 10.4271 8.7018 2.8024 21 1 11.3539 7.6835 3.3585 22 1 11.1125 10.0180 2.7486 23 1 9.2261 8.8041 3.6696 24 7 7.1227 4.7908 -0.2967 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.7176 1.4220 2.1485 33 1 3.7172 -0.1911 1.3960 34 1 5.1706 0.8331 1.3061 35 1 6.0277 2.3687 -0.0831 36 1 3.9885 5.6011 -0.3519 37 1 5.3649 8.3375 -1.6366 38 1 6.2207 8.7215 -0.1238 39 1 4.5127 8.2223 -0.0781 40 1 9.1745 6.4346 -0.9592 41 1 8.1711 7.8993 -1.0869 42 1 11.4015 9.1427 0.1687 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271113484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:15 Heat of formation + Delta-G solvation = 13.289620 kcal Electronic energy + Delta-G solvation = -21437.208033 eV Core-core repulsion = 18225.147245 eV Total energy + Delta-G solvation = -3212.060788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77046 -39.56181 -36.21915 -34.81229 -33.41627 -32.29815 -31.28133 -30.72542 -26.88117 -26.73662 -26.32235 -24.53132 -22.87572 -21.64476 -20.32585 -19.75924 -18.96590 -16.74616 -16.62487 -16.21938 -15.79494 -15.37481 -14.99467 -14.43845 -14.32224 -14.16453 -13.92508 -13.33491 -13.02850 -12.75643 -12.48263 -12.46173 -12.31401 -12.17163 -12.05014 -11.67890 -11.45797 -11.39627 -11.17372 -11.06986 -11.03611 -10.84106 -10.73306 -10.42460 -10.23772 -9.88452 -9.52043 -9.45638 -8.65034 -7.92405 -7.44249 -6.26016 -4.33790 2.36506 2.80793 2.93598 3.21276 3.27473 3.32431 3.73680 3.87428 4.29755 4.49057 4.54358 4.68020 4.92846 5.00113 5.05331 5.07528 5.25170 5.42509 5.46617 5.55863 5.58999 5.65910 5.71830 5.75367 5.86486 5.92772 5.96042 6.09588 6.10335 6.18544 6.27638 6.48312 6.58227 6.74909 6.93658 7.05148 7.47934 7.66119 7.68368 7.88617 8.06110 8.30757 8.66243 8.75268 9.32640 10.81187 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.031812 B = 0.003226 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.967953 B = 8677.173503 C = 9024.444977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.105 4.105 5 H 0.099 0.901 6 C -0.148 4.148 7 C 0.521 3.479 8 O -0.517 6.517 9 N -0.631 5.631 10 C 0.262 3.738 11 C -0.290 4.290 12 C 0.091 3.909 13 C -0.089 4.089 14 N -0.318 5.318 15 C 0.259 3.741 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.892 5.892 20 Si 0.906 3.094 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.322 5.322 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.409 0.591 36 H 0.159 0.841 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.032 -14.036 -0.756 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.127 4.127 5 H 0.117 0.883 6 C -0.206 4.206 7 C 0.307 3.693 8 O -0.390 6.390 9 N -0.279 5.279 10 C 0.010 3.990 11 C -0.321 4.321 12 C -0.040 4.040 13 C -0.147 4.147 14 N -0.100 5.100 15 C 0.141 3.859 16 C -0.575 4.575 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.530 5.530 20 Si 0.733 3.267 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.196 1.196 24 N -0.152 5.152 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.244 0.756 36 H 0.176 0.824 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.128 -13.593 -0.849 19.624 hybrid contribution 0.144 0.143 0.903 0.926 sum -13.984 -13.450 0.054 19.402 Atomic orbital electron populations 1.21762 0.95776 1.01414 1.02053 1.21600 0.96020 0.96637 1.02066 1.21450 0.91936 0.96697 1.03828 1.21319 0.98014 0.92584 1.00768 0.88273 1.21869 1.01394 1.01424 0.95907 1.20711 0.81075 0.91645 0.75917 1.90635 1.54983 1.45821 1.47581 1.42565 1.07591 1.05591 1.72143 1.19047 0.91921 0.85192 1.02876 1.21248 1.00867 0.88923 1.21095 1.21068 0.85266 0.96798 1.00903 1.20378 1.02210 0.89773 1.02329 1.48993 1.06608 1.02524 1.51863 1.19683 0.78916 0.88485 0.98826 1.21328 1.11580 1.32624 0.91949 0.91759 1.24930 0.95639 0.95369 0.97848 1.69915 1.17531 1.35790 1.29716 0.86355 0.78872 0.77942 0.83524 1.20340 1.20861 1.19645 1.77248 1.16237 0.92580 1.29163 0.92886 0.92659 0.92665 0.92012 0.91710 0.91080 0.90905 0.91807 0.91041 0.91980 0.75559 0.82394 0.91092 0.89907 0.90637 0.93029 0.92803 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.88 5.69 -26.73 -0.15 -1.03 16 3 C -0.10 -0.94 4.03 -26.73 -0.11 -1.04 16 4 C -0.11 -1.00 2.73 -91.77 -0.25 -1.25 16 5 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 6 C -0.15 -1.18 8.84 37.15 0.33 -0.85 16 7 C 0.52 7.47 7.12 -10.98 -0.08 7.39 16 8 O -0.52 -9.13 13.05 5.55 0.07 -9.06 16 9 N -0.63 -9.87 5.34 -11.13 -0.06 -9.93 16 10 C 0.26 5.42 8.11 -154.38 -1.25 4.17 16 11 C -0.29 -6.09 9.52 -39.83 -0.38 -6.47 16 12 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 13 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 14 N -0.32 -7.63 3.59 -58.33 -0.21 -7.84 16 15 C 0.26 6.69 5.81 -5.19 -0.03 6.66 16 16 C -0.54 -14.85 9.39 -34.44 -0.32 -15.17 16 17 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 20 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 24 N -0.32 -7.52 12.59 31.44 0.40 -7.13 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.41 6.57 -51.93 -0.34 0.06 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.43 6.57 -51.93 -0.34 0.09 16 34 H 0.06 0.47 7.56 -51.92 -0.39 0.08 16 35 H 0.41 5.17 8.24 -40.82 -0.34 4.83 16 36 H 0.16 3.23 5.92 -52.49 -0.31 2.92 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -32.03 347.85 -7.73 -39.77 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.70 Total: 3.57 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.19 Total: -6.38 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.86 Total: -49.27 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.03 -7.73 -39.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271113484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.058 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds