Wall clock time and date at job start Tue Mar 31 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47203 * 2 1 4 4 H 1.09005 * 109.47420 * 304.90516 * 3 2 1 5 5 C 1.50697 * 109.47087 * 184.90289 * 3 2 1 6 6 H 1.08000 * 120.00324 * 245.45367 * 5 3 2 7 7 C 1.37882 * 120.00120 * 65.45368 * 5 3 2 8 8 N 1.31512 * 119.99610 * 9.46973 * 7 5 3 9 9 Si 1.86798 * 120.00019 * 189.47022 * 7 5 3 10 10 H 1.48506 * 109.47022 * 84.99820 * 9 7 5 11 11 H 1.48504 * 109.46968 * 204.99204 * 9 7 5 12 12 H 1.48490 * 109.47212 * 324.99124 * 9 7 5 13 13 N 1.46498 * 109.47205 * 64.90510 * 3 2 1 14 14 C 1.34779 * 119.99839 * 274.99925 * 13 3 2 15 15 O 1.21605 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.47427 * 119.99896 * 180.02562 * 14 13 3 17 17 C 1.38051 * 126.41574 * 0.19145 * 16 14 13 18 18 N 1.34259 * 107.41235 * 180.26222 * 17 16 14 19 19 C 1.46508 * 125.74834 * 179.73559 * 18 17 16 20 20 N 1.39933 * 108.49626 * 359.72650 * 18 17 16 21 21 C 1.30448 * 108.89807 * 0.02562 * 20 18 17 22 22 C 1.50697 * 125.98922 * 179.97438 * 21 20 18 23 23 C 1.53005 * 109.46959 * 60.02753 * 22 21 20 24 24 C 1.52999 * 109.47315 * 300.02930 * 22 21 20 25 25 H 1.08999 * 109.46875 * 299.99839 * 1 2 3 26 26 H 1.08997 * 109.47068 * 59.99332 * 1 2 3 27 27 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46610 * 239.99692 * 2 1 3 29 29 H 1.08997 * 109.47068 * 120.00667 * 2 1 3 30 30 H 0.97005 * 119.99859 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00329 * 94.99640 * 13 3 2 32 32 H 1.07992 * 126.28949 * 0.02562 * 17 16 14 33 33 H 1.09005 * 109.46593 * 269.96727 * 19 18 17 34 34 H 1.08991 * 109.47232 * 29.96889 * 19 18 17 35 35 H 1.08997 * 109.47008 * 149.97332 * 19 18 17 36 36 H 1.09000 * 109.46936 * 180.02562 * 22 21 20 37 37 H 1.08998 * 109.46504 * 299.99926 * 23 22 21 38 38 H 1.08998 * 109.46992 * 179.97438 * 23 22 21 39 39 H 1.09000 * 109.46749 * 59.99583 * 23 22 21 40 40 H 1.09007 * 109.47053 * 299.99669 * 24 22 21 41 41 H 1.08998 * 109.47540 * 59.99222 * 24 22 21 42 42 H 1.08998 * 109.47079 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5421 1.4441 -0.1214 6 1 4.1494 1.8089 0.6938 7 6 4.1412 0.9800 -1.2733 8 7 3.4096 0.7115 -2.3326 9 14 5.9919 0.7326 -1.3291 10 1 6.3289 -0.6069 -0.7838 11 1 6.4618 0.8273 -2.7347 12 1 6.6562 1.7807 -0.5135 13 7 1.6505 2.0981 1.2508 14 6 0.4330 2.6651 1.3637 15 8 -0.3420 2.6329 0.4272 16 6 0.0413 3.3255 2.6223 17 6 0.8132 3.4434 3.7607 18 7 0.0843 4.1049 4.6737 19 6 0.5168 4.4446 6.0316 20 7 -1.1581 4.4155 4.1095 21 6 -1.1934 3.9591 2.8880 22 6 -2.3504 4.0809 1.9302 23 6 -2.6596 5.5599 1.6893 24 6 -3.5804 3.3933 2.5262 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8310 0.3846 -3.1429 31 1 2.2688 2.1242 1.9978 32 1 1.8172 3.0686 3.8938 33 1 0.2448 3.6376 6.7120 34 1 1.5979 4.5822 6.0448 35 1 0.0292 5.3666 6.3482 36 1 -2.0908 3.6052 0.9845 37 1 -2.9191 6.0355 2.6351 38 1 -3.4962 5.6480 0.9962 39 1 -1.7832 6.0497 1.2647 40 1 -3.3602 2.3396 2.6979 41 1 -3.8400 3.8689 3.4720 42 1 -4.4172 3.4811 1.8333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273826114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:45 Heat of formation + Delta-G solvation = 18.468223 kcal Electronic energy + Delta-G solvation = -22429.571694 eV Core-core repulsion = 19217.735468 eV Total energy + Delta-G solvation = -3211.836227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25027 -38.48772 -35.73704 -34.77384 -32.55985 -32.17911 -31.16215 -29.71938 -27.13969 -26.94091 -26.59439 -23.34310 -22.41689 -22.03456 -20.17979 -19.23771 -18.81808 -17.59821 -16.22542 -15.61316 -15.42630 -15.11661 -14.51898 -14.39527 -14.27675 -14.07867 -13.40028 -13.26828 -12.95519 -12.70383 -12.61064 -12.43722 -12.01642 -11.88212 -11.40960 -11.34456 -11.20255 -11.02155 -10.99045 -10.79428 -10.74154 -10.47547 -10.28138 -10.13468 -9.62180 -9.21904 -9.06038 -8.80341 -8.44187 -8.41885 -7.72062 -6.11657 -4.16634 1.73934 2.43352 2.48561 3.25983 3.32954 3.33869 4.18824 4.23638 4.38195 4.52413 4.72514 4.87136 4.95458 5.18322 5.19552 5.21471 5.41225 5.47035 5.67430 5.81338 5.81739 5.93725 6.00728 6.11532 6.20439 6.41191 6.43995 6.46878 6.53165 6.66503 6.81095 6.92436 7.06710 7.23979 7.39740 7.51355 7.66611 7.73138 7.81518 7.91767 8.12675 8.77691 8.85488 9.26892 9.50025 10.96562 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.004802 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.545287 B = 5828.921511 C = 6610.066115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.270 3.730 4 H 0.057 0.943 5 C -0.536 4.536 6 H 0.059 0.941 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.707 5.707 14 C 0.579 3.421 15 O -0.547 6.547 16 C -0.273 4.273 17 C 0.089 3.911 18 N -0.370 5.370 19 C 0.101 3.899 20 N -0.304 5.304 21 C 0.138 3.862 22 C -0.032 4.032 23 C -0.137 4.137 24 C -0.137 4.137 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.021 0.979 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.383 0.617 32 H 0.181 0.819 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.473 5.799 14.293 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.168 3.832 4 H 0.075 0.925 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.353 5.353 14 C 0.365 3.635 15 O -0.427 6.427 16 C -0.288 4.288 17 C -0.061 4.061 18 N -0.149 5.149 19 C -0.040 4.040 20 N -0.125 5.125 21 C -0.030 4.030 22 C -0.052 4.052 23 C -0.195 4.195 24 C -0.195 4.195 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.215 0.785 32 H 0.198 0.802 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.140 0.860 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.566 6.358 14.476 17.528 hybrid contribution 2.073 -0.661 -0.072 2.177 sum -5.493 5.697 14.404 16.435 Atomic orbital electron populations 1.21844 0.97961 0.98049 1.01701 1.21841 0.93071 0.99905 1.00981 1.18769 0.94173 0.88853 0.81376 0.92483 1.21172 0.90673 1.43912 1.01705 0.92245 1.24873 0.98292 0.95236 0.95021 1.69986 1.35663 1.43771 1.02125 0.86563 0.85230 0.78640 0.77250 1.20482 1.21199 1.19993 1.46325 1.14392 1.56311 1.18321 1.17187 0.82513 0.78244 0.85528 1.90657 1.51560 1.60809 1.39719 1.20665 0.96743 1.14340 0.97061 1.23087 0.98085 0.95723 0.89236 1.48224 1.11410 1.43227 1.12028 1.21887 1.00886 1.02682 0.78594 1.77054 0.99781 1.25424 1.10276 1.22362 0.94980 0.93764 0.91848 1.19986 0.89947 0.97465 0.97813 1.21761 1.01466 0.94913 1.01384 1.21758 0.96672 1.00444 1.00611 0.93820 0.92887 0.95975 0.90365 0.94883 0.92594 0.78523 0.80215 0.90651 0.89309 0.89262 0.85997 0.92770 0.92170 0.92690 0.92752 0.92769 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.12 -2.84 5.50 -26.73 -0.15 -2.99 16 3 C 0.27 6.72 2.11 -69.09 -0.15 6.58 16 4 H 0.06 1.67 7.52 -51.93 -0.39 1.27 16 5 C -0.54 -13.99 8.66 -34.44 -0.30 -14.29 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.86 5.16 -17.82 -0.09 1.77 16 8 N -0.88 -24.74 12.16 55.43 0.67 -24.07 16 9 Si 0.90 20.42 29.55 -169.99 -5.02 15.40 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.71 -14.60 5.01 -56.01 -0.28 -14.88 16 14 C 0.58 11.86 6.38 -12.52 -0.08 11.78 16 15 O -0.55 -12.70 11.70 5.27 0.06 -12.64 16 16 C -0.27 -4.69 6.13 -105.06 -0.64 -5.34 16 17 C 0.09 1.19 10.99 -16.56 -0.18 1.01 16 18 N -0.37 -4.67 3.98 -67.59 -0.27 -4.94 16 19 C 0.10 0.74 11.44 59.85 0.68 1.42 16 20 N -0.30 -4.66 12.50 33.90 0.42 -4.24 16 21 C 0.14 2.28 5.77 -82.02 -0.47 1.81 16 22 C -0.03 -0.49 3.26 -91.77 -0.30 -0.79 16 23 C -0.14 -1.83 9.18 37.16 0.34 -1.49 16 24 C -0.14 -1.81 9.18 37.16 0.34 -1.47 16 25 H 0.04 0.95 5.65 -51.93 -0.29 0.66 16 26 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 2.05 6.80 -51.93 -0.35 1.70 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.38 6.78 7.45 -40.82 -0.30 6.48 16 32 H 0.18 1.79 7.46 -52.49 -0.39 1.40 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.12 2.18 5.60 -51.93 -0.29 1.89 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -31.86 342.40 -6.55 -38.41 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.62 Total: 6.54 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.68 Total: -4.74 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.55 Total: -48.13 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.06 Total: -12.64 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.86 -6.55 -38.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273826114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.879 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds