Wall clock time and date at job start Tue Mar 31 2020 03:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47203 * 2 1 4 4 H 1.09005 * 109.47420 * 304.90516 * 3 2 1 5 5 C 1.50697 * 109.47087 * 184.90289 * 3 2 1 6 6 H 1.08000 * 120.00324 * 245.45367 * 5 3 2 7 7 C 1.37882 * 120.00120 * 65.45368 * 5 3 2 8 8 N 1.31512 * 119.99610 * 9.46973 * 7 5 3 9 9 Si 1.86798 * 120.00019 * 189.47022 * 7 5 3 10 10 H 1.48506 * 109.47022 * 84.99820 * 9 7 5 11 11 H 1.48504 * 109.46968 * 204.99204 * 9 7 5 12 12 H 1.48490 * 109.47212 * 324.99124 * 9 7 5 13 13 N 1.46498 * 109.47205 * 64.90510 * 3 2 1 14 14 C 1.34779 * 119.99839 * 274.99925 * 13 3 2 15 15 O 1.21605 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.47427 * 119.99896 * 180.02562 * 14 13 3 17 17 C 1.38051 * 126.41574 * 0.19145 * 16 14 13 18 18 N 1.34259 * 107.41235 * 180.26222 * 17 16 14 19 19 C 1.46508 * 125.74834 * 179.73559 * 18 17 16 20 20 N 1.39933 * 108.49626 * 359.72650 * 18 17 16 21 21 C 1.30448 * 108.89807 * 0.02562 * 20 18 17 22 22 C 1.50697 * 125.98922 * 179.97438 * 21 20 18 23 23 C 1.53005 * 109.46959 * 60.02753 * 22 21 20 24 24 C 1.52999 * 109.47315 * 300.02930 * 22 21 20 25 25 H 1.08999 * 109.46875 * 299.99839 * 1 2 3 26 26 H 1.08997 * 109.47068 * 59.99332 * 1 2 3 27 27 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46610 * 239.99692 * 2 1 3 29 29 H 1.08997 * 109.47068 * 120.00667 * 2 1 3 30 30 H 0.97005 * 119.99859 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00329 * 94.99640 * 13 3 2 32 32 H 1.07992 * 126.28949 * 0.02562 * 17 16 14 33 33 H 1.09005 * 109.46593 * 269.96727 * 19 18 17 34 34 H 1.08991 * 109.47232 * 29.96889 * 19 18 17 35 35 H 1.08997 * 109.47008 * 149.97332 * 19 18 17 36 36 H 1.09000 * 109.46936 * 180.02562 * 22 21 20 37 37 H 1.08998 * 109.46504 * 299.99926 * 23 22 21 38 38 H 1.08998 * 109.46992 * 179.97438 * 23 22 21 39 39 H 1.09000 * 109.46749 * 59.99583 * 23 22 21 40 40 H 1.09007 * 109.47053 * 299.99669 * 24 22 21 41 41 H 1.08998 * 109.47540 * 59.99222 * 24 22 21 42 42 H 1.08998 * 109.47079 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5421 1.4441 -0.1214 6 1 4.1494 1.8089 0.6938 7 6 4.1412 0.9800 -1.2733 8 7 3.4096 0.7115 -2.3326 9 14 5.9919 0.7326 -1.3291 10 1 6.3289 -0.6069 -0.7838 11 1 6.4618 0.8273 -2.7347 12 1 6.6562 1.7807 -0.5135 13 7 1.6505 2.0981 1.2508 14 6 0.4330 2.6651 1.3637 15 8 -0.3420 2.6329 0.4272 16 6 0.0413 3.3255 2.6223 17 6 0.8132 3.4434 3.7607 18 7 0.0843 4.1049 4.6737 19 6 0.5168 4.4446 6.0316 20 7 -1.1581 4.4155 4.1095 21 6 -1.1934 3.9591 2.8880 22 6 -2.3504 4.0809 1.9302 23 6 -2.6596 5.5599 1.6893 24 6 -3.5804 3.3933 2.5262 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8310 0.3846 -3.1429 31 1 2.2688 2.1242 1.9978 32 1 1.8172 3.0686 3.8938 33 1 0.2448 3.6376 6.7120 34 1 1.5979 4.5822 6.0448 35 1 0.0292 5.3666 6.3482 36 1 -2.0908 3.6052 0.9845 37 1 -2.9191 6.0355 2.6351 38 1 -3.4962 5.6480 0.9962 39 1 -1.7832 6.0497 1.2647 40 1 -3.3602 2.3396 2.6979 41 1 -3.8400 3.8689 3.4720 42 1 -4.4172 3.4811 1.8333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273826114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:44 Heat of formation + Delta-G solvation = -2.455833 kcal Electronic energy + Delta-G solvation = -22430.479030 eV Core-core repulsion = 19217.735468 eV Total energy + Delta-G solvation = -3212.743562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.39594 -40.12720 -37.04568 -36.42778 -34.24974 -33.45265 -32.82811 -31.05182 -28.84045 -28.00912 -27.71704 -25.14204 -23.88924 -23.11796 -21.84099 -20.89952 -20.05334 -19.08707 -17.79252 -17.10493 -16.74571 -16.63420 -15.98832 -15.81415 -15.58271 -15.41077 -14.83592 -14.55872 -14.30711 -14.00542 -13.79667 -13.48456 -13.39040 -13.25781 -13.20541 -12.93080 -12.88114 -12.57711 -12.34662 -12.16153 -12.09372 -12.08957 -11.87869 -11.64587 -11.53574 -11.03706 -10.51262 -10.38031 -10.29156 -9.72258 -9.39071 -8.14591 -6.27186 0.62359 1.20644 1.47226 1.48316 1.53023 1.57620 2.41085 2.69246 2.80968 3.17357 3.42391 3.72057 4.01378 4.14315 4.29191 4.39149 4.46522 4.51387 4.52416 4.58813 4.65653 4.68926 4.73154 4.80331 4.80618 4.95185 4.98935 5.11404 5.13895 5.29634 5.35137 5.35639 5.48608 5.57511 5.63780 5.70842 5.81544 5.95542 6.04538 6.13773 6.62095 6.82042 7.14392 7.39299 7.72836 8.94214 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.004802 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.545287 B = 5828.921511 C = 6610.066115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.263 1.263 13 N -0.702 5.702 14 C 0.578 3.422 15 O -0.585 6.585 16 C -0.316 4.316 17 C 0.115 3.885 18 N -0.359 5.359 19 C 0.088 3.912 20 N -0.317 5.317 21 C 0.126 3.874 22 C -0.038 4.038 23 C -0.129 4.129 24 C -0.128 4.128 25 H 0.044 0.956 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.400 0.600 32 H 0.219 0.781 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 6.139 17.352 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.150 4.150 3 C 0.176 3.824 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.187 1.187 13 N -0.351 5.351 14 C 0.367 3.633 15 O -0.467 6.467 16 C -0.331 4.331 17 C -0.038 4.038 18 N -0.137 5.137 19 C -0.051 4.051 20 N -0.138 5.138 21 C -0.041 4.041 22 C -0.058 4.058 23 C -0.187 4.187 24 C -0.186 4.186 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.234 0.766 32 H 0.236 0.764 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.370 6.725 17.610 19.898 hybrid contribution 1.679 -0.702 -0.922 2.040 sum -4.691 6.023 16.688 18.351 Atomic orbital electron populations 1.21669 0.96809 0.99098 1.00493 1.21691 0.93983 0.99134 1.00198 1.18341 0.93654 0.88906 0.81543 0.97979 1.21542 0.91316 1.43521 1.02097 0.90845 1.25762 1.03028 0.94913 0.94602 1.70145 1.37734 1.44870 1.02774 0.85451 0.79415 0.79014 0.77008 1.19608 1.21660 1.18707 1.46027 1.15114 1.56469 1.17474 1.17643 0.81743 0.77568 0.86384 1.90643 1.52532 1.62071 1.41480 1.20433 0.98473 1.17176 0.97047 1.23527 0.98799 0.93666 0.87790 1.48691 1.10227 1.41398 1.13373 1.22400 1.03007 1.03754 0.75935 1.77003 1.01417 1.25762 1.09660 1.22482 0.95117 0.94004 0.92487 1.19957 0.90808 0.98530 0.96534 1.21696 1.01415 0.93486 1.02107 1.21688 0.96243 0.99407 1.01257 0.93658 0.95449 0.93613 0.93134 0.93367 0.92742 0.76581 0.76435 0.88765 0.86098 0.88501 0.89234 0.91884 0.90512 0.94173 0.93971 0.91934 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -4.99 16 2 C -0.11 -5.41 5.50 30.59 0.17 -5.24 16 3 C 0.28 14.29 2.11 44.24 0.09 14.38 16 4 H 0.00 0.14 7.52 -2.38 -0.02 0.12 16 5 C -0.55 -28.56 8.66 25.60 0.22 -28.34 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.93 5.16 84.66 0.44 1.36 16 8 N -0.92 -53.21 12.16 21.45 0.26 -52.95 16 9 Si 0.97 41.65 29.55 68.60 2.03 43.68 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 N -0.70 -29.15 5.01 -449.38 -2.25 -31.40 16 14 C 0.58 24.23 6.38 86.66 0.55 24.78 16 15 O -0.58 -28.71 11.70 -4.05 -0.05 -28.76 16 16 C -0.32 -10.71 6.13 -20.15 -0.12 -10.84 16 17 C 0.12 2.77 10.99 84.28 0.93 3.69 16 18 N -0.36 -7.94 3.98 -367.77 -1.46 -9.40 16 19 C 0.09 0.90 11.44 127.77 1.46 2.36 16 20 N -0.32 -9.16 12.50 -46.67 -0.58 -9.75 16 21 C 0.13 4.13 5.77 43.52 0.25 4.38 16 22 C -0.04 -1.19 3.26 -11.54 -0.04 -1.23 16 23 C -0.13 -3.44 9.18 71.98 0.66 -2.78 16 24 C -0.13 -3.35 9.18 71.98 0.66 -2.69 16 25 H 0.04 2.02 5.65 -2.39 -0.01 2.01 16 26 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 2.74 6.80 -2.39 -0.02 2.72 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 31 H 0.40 13.56 7.45 -92.71 -0.69 12.87 16 32 H 0.22 3.37 7.46 -2.91 -0.02 3.34 16 33 H 0.09 0.70 8.14 -2.38 -0.02 0.69 16 34 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.09 3.41 5.60 -2.39 -0.01 3.40 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.57 342.40 4.15 -68.42 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.32 Total: 25.29 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.88 Total: -5.13 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -4.04 Total: -103.50 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -72.57 4.15 -68.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273826114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.966 kcal (2) G-P(sol) polarization free energy of solvation -72.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds