Wall clock time and date at job start Tue Mar 31 2020 02:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46600 * 2 1 4 4 C 1.53008 * 109.46600 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46804 * 179.97438 * 4 3 2 6 6 N 1.39935 * 125.75391 * 269.97574 * 5 4 3 7 7 C 1.30438 * 108.91527 * 179.73646 * 6 5 4 8 8 C 1.41319 * 108.02920 * 0.44192 * 7 6 5 9 9 C 1.47355 * 126.42381 * 179.81457 * 8 7 6 10 10 O 1.21630 * 119.99932 * 173.66340 * 9 8 7 11 11 N 1.34780 * 120.00242 * 353.67119 * 9 8 7 12 12 C 1.46503 * 119.99691 * 4.28769 * 11 9 8 13 13 C 1.36977 * 120.00088 * 184.29462 * 11 9 8 14 14 H 1.07998 * 120.00536 * 25.22351 * 13 11 9 15 15 C 1.38983 * 119.99814 * 205.22693 * 13 11 9 16 16 N 1.31412 * 119.99807 * 20.29263 * 15 13 11 17 17 Si 1.86794 * 119.99912 * 200.29460 * 15 13 11 18 18 H 1.48499 * 109.47146 * 60.00007 * 17 15 13 19 19 H 1.48500 * 109.47016 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47238 * 299.99770 * 17 15 13 21 21 C 1.34292 * 125.75315 * 90.00143 * 5 4 3 22 22 C 1.50696 * 126.29432 * 359.95606 * 21 5 4 23 23 C 1.52998 * 109.47145 * 90.00037 * 22 21 5 24 24 H 1.08997 * 109.47238 * 299.99664 * 1 2 3 25 25 H 1.09003 * 109.46816 * 60.00133 * 1 2 3 26 26 H 1.08998 * 109.46801 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47238 * 240.00336 * 2 1 3 28 28 H 1.08993 * 109.46887 * 119.99749 * 2 1 3 29 29 H 1.09003 * 109.47412 * 60.00490 * 3 2 1 30 30 H 1.09003 * 109.47427 * 299.99493 * 3 2 1 31 31 H 1.08997 * 109.47238 * 60.00336 * 4 3 2 32 32 H 1.08993 * 109.46887 * 299.99749 * 4 3 2 33 33 H 1.08009 * 125.98828 * 180.29774 * 7 6 5 34 34 H 1.08997 * 109.46998 * 60.48350 * 12 11 9 35 35 H 1.09002 * 109.47007 * 180.48415 * 12 11 9 36 36 H 1.09002 * 109.47131 * 300.48406 * 12 11 9 37 37 H 0.97004 * 119.99760 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.47209 * 210.00177 * 22 21 5 39 39 H 1.09005 * 109.47242 * 329.99624 * 22 21 5 40 40 H 1.09006 * 109.46970 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47283 * 299.99435 * 23 22 21 42 42 H 1.09000 * 109.47099 * 60.00072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 7 4.3317 3.5938 -1.1359 7 6 4.7421 4.7731 -0.7586 8 6 4.7569 4.7997 0.6542 9 6 5.1579 5.9349 1.5038 10 8 5.0170 5.8712 2.7102 11 7 5.6807 7.0439 0.9440 12 6 5.7636 7.1590 -0.5141 13 6 6.1347 8.0632 1.7385 14 1 6.4585 7.8579 2.7481 15 6 6.1786 9.3619 1.2452 16 7 5.4430 9.6963 0.2089 17 14 7.2833 10.6318 2.0553 18 1 8.6946 10.1747 1.9885 19 1 7.1495 11.9291 1.3453 20 1 6.8844 10.8008 3.4757 21 6 4.3194 3.5642 1.0895 22 6 4.1631 3.1274 2.5233 23 6 5.4699 2.4980 3.0100 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9289 0.8908 33 1 5.0238 5.5860 -1.4116 34 1 4.7619 7.1039 -0.9404 35 1 6.2187 8.1137 -0.7779 36 1 6.3717 6.3451 -0.9089 37 1 5.4739 10.6026 -0.1356 38 1 3.9235 3.9920 3.1425 39 1 3.3586 2.3954 2.5946 40 1 5.3570 2.1825 4.0473 41 1 5.7095 1.6335 2.3910 42 1 6.2744 3.2301 2.9388 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277582564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:45 Heat of formation + Delta-G solvation = 22.020746 kcal Electronic energy + Delta-G solvation = -22269.885232 eV Core-core repulsion = 19058.203054 eV Total energy + Delta-G solvation = -3211.682178 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.45246 -39.84992 -36.96813 -36.71114 -34.93393 -33.84749 -33.18108 -30.23217 -29.80956 -28.20185 -26.72103 -25.21378 -24.38661 -22.86014 -22.15377 -21.44718 -19.80466 -19.00887 -17.96135 -17.13303 -16.76413 -16.45255 -16.08886 -15.92971 -15.55293 -15.26847 -15.15763 -14.55190 -14.44946 -14.23205 -14.01768 -13.58733 -13.46881 -13.28675 -13.21593 -13.02664 -12.57973 -12.46528 -12.42634 -12.35616 -12.15019 -12.10425 -12.04710 -11.95387 -11.62886 -11.47019 -10.89592 -10.31057 -10.23879 -9.61353 -9.44536 -8.33047 -5.92444 0.63355 1.26206 1.43782 1.48424 1.50107 1.55948 2.31831 2.60222 3.12404 3.20767 3.56681 3.63052 3.81114 3.97257 3.99936 4.14713 4.30819 4.31588 4.36254 4.40094 4.51473 4.61129 4.62875 4.69565 4.73691 4.82729 4.86660 4.90643 4.98844 5.02234 5.21940 5.27619 5.30304 5.32106 5.34466 5.43601 5.46890 5.54602 6.04403 6.19060 6.54013 6.65634 7.21052 7.50974 8.13279 8.70545 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.030301 B = 0.004059 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.846468 B = 6895.827627 C = 7323.540672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.132 4.132 4 C 0.120 3.880 5 N -0.355 5.355 6 N -0.318 5.318 7 C 0.052 3.948 8 C -0.300 4.300 9 C 0.514 3.486 10 O -0.627 6.627 11 N -0.456 5.456 12 C 0.092 3.908 13 C -0.341 4.341 14 H 0.073 0.927 15 C -0.004 4.004 16 N -0.891 5.891 17 Si 0.990 3.010 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.276 1.276 21 C 0.146 3.854 22 C -0.062 4.062 23 C -0.131 4.131 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.213 0.787 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.275 0.725 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 -18.378 -2.645 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.170 4.170 4 C 0.001 3.999 5 N -0.134 5.134 6 N -0.138 5.138 7 C -0.134 4.134 8 C -0.314 4.314 9 C 0.305 3.695 10 O -0.516 6.516 11 N -0.173 5.173 12 C -0.051 4.051 13 C -0.469 4.469 14 H 0.091 0.909 15 C -0.205 4.205 16 N -0.530 5.530 17 Si 0.813 3.187 18 H -0.191 1.191 19 H -0.195 1.195 20 H -0.201 1.201 21 C 0.012 3.988 22 C -0.101 4.101 23 C -0.189 4.189 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.229 0.771 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.070 -19.107 -3.251 20.034 hybrid contribution 0.502 1.793 0.785 2.021 sum -4.569 -17.314 -2.466 18.075 Atomic orbital electron populations 1.21778 0.95476 1.02359 1.01601 1.21422 0.96238 0.93836 1.03621 1.21999 0.93177 0.99488 1.02370 1.22226 0.95420 0.75914 1.06342 1.48744 1.49405 1.12923 1.02374 1.77016 1.23632 1.04586 1.08552 1.25292 0.97420 0.96202 0.94480 1.20261 1.20302 0.96715 0.94165 1.17722 0.80649 0.84042 0.87097 1.90477 1.61074 1.83730 1.16274 1.43521 1.52486 1.14784 1.06546 1.22082 0.99992 1.02651 0.80386 1.19569 1.41259 0.87347 0.98712 0.90940 1.26097 0.97689 0.98929 0.97820 1.70055 1.36084 1.20643 1.26177 0.85060 0.78722 0.76810 0.78117 1.19076 1.19513 1.20134 1.21668 0.95001 0.90223 0.91861 1.20406 1.00465 1.02312 0.86933 1.21581 0.95210 0.99679 1.02396 0.93005 0.93367 0.91279 0.90632 0.89989 0.92083 0.92696 0.87313 0.86320 0.77115 0.93292 0.89505 0.92507 0.91553 0.90208 0.87738 0.89611 0.91196 0.95252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.11 -1.31 5.93 30.60 0.18 -1.13 16 3 C -0.13 -2.33 5.54 30.60 0.17 -2.16 16 4 C 0.12 2.31 6.03 86.38 0.52 2.83 16 5 N -0.35 -10.86 3.58 -332.93 -1.19 -12.05 16 6 N -0.32 -11.29 12.50 -56.25 -0.70 -11.99 16 7 C 0.05 2.02 9.91 85.66 0.85 2.87 16 8 C -0.30 -13.24 6.04 -20.15 -0.12 -13.36 16 9 C 0.51 27.71 7.61 86.64 0.66 28.37 16 10 O -0.63 -36.90 14.57 -4.13 -0.06 -36.96 16 11 N -0.46 -25.14 3.00 -662.68 -1.99 -27.12 16 12 C 0.09 4.28 7.53 127.77 0.96 5.24 16 13 C -0.34 -20.07 9.16 84.07 0.77 -19.30 16 14 H 0.07 4.50 7.55 -2.91 -0.02 4.48 16 15 C 0.00 -0.20 4.86 84.93 0.41 0.21 16 16 N -0.89 -48.57 11.02 21.67 0.24 -48.33 16 17 Si 0.99 42.93 29.60 68.60 2.03 44.96 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.15 5.25 6.26 42.15 0.26 5.51 16 22 C -0.06 -1.89 5.46 29.85 0.16 -1.73 16 23 C -0.13 -3.50 9.89 71.98 0.71 -2.78 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.12 1.66 7.63 -2.39 -0.02 1.64 16 33 H 0.21 7.69 4.17 -2.91 -0.01 7.67 16 34 H 0.05 2.19 6.57 -2.39 -0.02 2.18 16 35 H 0.09 4.30 5.50 -2.39 -0.01 4.28 16 36 H 0.06 2.29 6.39 -2.39 -0.02 2.28 16 37 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 38 H 0.08 3.06 6.40 -2.39 -0.02 3.05 16 39 H 0.10 2.29 7.70 -2.38 -0.02 2.27 16 40 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -73.02 339.52 5.59 -67.43 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.01 Total: 20.69 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 6.26 Total: 3.37 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -3.64 Total: -99.50 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.06 Total: -36.96 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -73.02 5.59 -67.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277582564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.453 kcal (2) G-P(sol) polarization free energy of solvation -73.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds