Wall clock time and date at job start Tue Mar 31 2020 01:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00184 * 2 1 4 4 N 1.46898 * 109.46905 * 124.14749 * 3 2 1 5 5 C 1.46901 * 110.99701 * 300.27959 * 4 3 2 6 6 C 1.50697 * 109.47178 * 288.16228 * 5 4 3 7 7 H 1.07997 * 120.00168 * 354.74208 * 6 5 4 8 8 C 1.37881 * 120.00143 * 174.74495 * 6 5 4 9 9 N 1.31515 * 120.00079 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00201 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46842 * 89.99829 * 10 8 6 12 12 H 1.48491 * 109.47198 * 209.99916 * 10 8 6 13 13 H 1.48495 * 109.47050 * 329.99998 * 10 8 6 14 14 C 1.46894 * 111.00339 * 64.23387 * 4 3 2 15 15 C 1.50701 * 109.47098 * 66.04594 * 14 4 3 16 16 N 1.29940 * 126.28795 * 90.02477 * 15 14 4 17 17 O 1.21297 * 110.25389 * 179.73733 * 16 15 14 18 18 C 1.33649 * 109.80968 * 359.97438 * 17 16 15 19 19 C 1.50696 * 126.55103 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46936 * 240.02454 * 19 18 17 21 21 C 1.53009 * 109.47246 * 0.02562 * 19 18 17 22 22 C 1.52996 * 109.47421 * 120.02545 * 19 18 17 23 23 N 1.31125 * 106.89493 * 359.97438 * 18 17 16 24 24 H 1.07996 * 120.00448 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.99933 * 359.97438 * 1 2 3 26 26 H 1.08006 * 119.99357 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47016 * 4.14557 * 3 2 1 28 28 H 1.08996 * 109.47015 * 244.14662 * 3 2 1 29 29 H 1.09001 * 109.47623 * 48.16404 * 5 4 3 30 30 H 1.09002 * 109.47176 * 168.16502 * 5 4 3 31 31 H 0.96993 * 120.00675 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.46990 * 306.04561 * 14 4 3 33 33 H 1.09001 * 109.47151 * 186.04708 * 14 4 3 34 34 H 1.09004 * 109.47365 * 60.00081 * 20 19 18 35 35 H 1.09004 * 109.47114 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47371 * 299.99805 * 20 19 18 37 37 H 1.08998 * 109.46530 * 60.00224 * 21 19 18 38 38 H 1.09002 * 109.46732 * 179.97438 * 21 19 18 39 39 H 1.08993 * 109.46900 * 300.00273 * 21 19 18 40 40 H 1.08999 * 109.47346 * 59.99344 * 22 19 18 41 41 H 1.09004 * 109.47174 * 179.97438 * 22 19 18 42 42 H 1.09003 * 109.46856 * 299.99749 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9816 1.3404 1.1462 5 6 2.2478 1.2138 2.4125 6 6 1.4883 2.4871 2.6824 7 1 1.6113 3.3381 2.0289 8 6 0.6365 2.5658 3.7637 9 7 0.4863 1.5294 4.5593 10 14 -0.3055 4.1439 4.0979 11 1 -1.6097 4.1014 3.3890 12 1 -0.5398 4.2808 5.5578 13 1 0.4842 5.3040 3.6124 14 6 4.0114 0.2994 1.0282 15 6 4.8989 0.6023 -0.1514 16 7 5.9862 1.3135 -0.1332 17 8 6.4727 1.3654 -1.2432 18 6 5.7192 0.6706 -2.1009 19 6 5.9754 0.4854 -3.5743 20 6 4.7975 1.0491 -4.3715 21 6 7.2567 1.2242 -3.9661 22 6 6.1322 -1.0052 -3.8813 23 7 4.7150 0.1800 -1.4151 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3576 2.1323 0.0743 28 1 2.6333 1.3956 -0.9248 29 1 1.5481 0.3807 2.3453 30 1 2.9523 1.0320 3.2241 31 1 -0.1132 1.5845 5.3198 32 1 3.5336 -0.6696 0.8841 33 1 4.6113 0.2770 1.9380 34 1 4.6858 2.1111 -4.1529 35 1 4.9830 0.9156 -5.4374 36 1 3.8847 0.5227 -4.0925 37 1 8.0958 0.8225 -3.3981 38 1 7.4422 1.0898 -5.0317 39 1 7.1450 2.2861 -3.7474 40 1 5.2195 -1.5317 -3.6022 41 1 6.3170 -1.1392 -4.9472 42 1 6.9714 -1.4069 -3.3133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292210425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:43 Heat of formation + Delta-G solvation = 84.699060 kcal Electronic energy + Delta-G solvation = -22266.915256 eV Core-core repulsion = 19057.951013 eV Total energy + Delta-G solvation = -3208.964242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.34884 -37.67234 -37.56545 -35.23352 -32.80554 -32.31777 -31.27725 -28.19653 -27.60195 -27.51698 -26.53453 -24.29565 -24.10659 -22.30087 -20.98854 -19.83523 -18.75341 -17.86754 -17.09455 -16.22243 -15.74563 -15.12453 -14.74037 -14.39290 -14.34731 -14.27501 -13.91850 -13.68813 -12.77446 -12.68769 -12.42517 -12.30079 -12.16271 -11.98096 -11.81608 -11.60444 -11.55285 -11.34223 -11.19264 -11.05688 -10.95905 -10.76388 -10.70029 -10.62475 -10.43138 -9.99460 -9.63168 -9.27591 -8.68141 -8.40598 -7.34657 -6.00937 -4.01761 1.39505 2.49175 2.88618 2.94998 3.32693 3.38993 3.43834 3.76438 4.29449 4.45600 4.52715 4.56343 4.68407 5.06218 5.21235 5.27564 5.31789 5.34705 5.45512 5.52662 5.55732 5.57805 5.60598 5.73207 5.74704 5.85062 5.94428 5.97568 6.00685 6.11218 6.16894 6.27239 6.46892 6.67678 7.15731 7.22495 7.32847 7.44056 7.79345 8.02151 8.13988 8.47830 8.49872 9.05194 9.61818 11.09713 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.026483 B = 0.004081 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.033223 B = 6859.166341 C = 7136.120606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.173 4.173 3 C 0.091 3.909 4 N -0.524 5.524 5 C 0.192 3.808 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.137 3.863 15 C 0.193 3.807 16 N -0.374 5.374 17 O 0.074 5.926 18 C 0.170 3.830 19 C 0.033 3.967 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.139 4.139 23 N -0.470 5.470 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.011 0.989 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.339 -4.735 -18.481 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.193 4.193 3 C -0.037 4.037 4 N -0.248 5.248 5 C 0.067 3.933 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 C 0.007 3.993 15 C -0.080 4.080 16 N -0.081 5.081 17 O 0.016 5.984 18 C -0.051 4.051 19 C 0.030 3.970 20 C -0.199 4.199 21 C -0.207 4.207 22 C -0.197 4.197 23 N -0.204 5.204 24 H 0.104 0.896 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.435 -4.170 -17.461 20.764 hybrid contribution -0.963 -0.005 0.337 1.021 sum 9.472 -4.175 -17.124 20.009 Atomic orbital electron populations 1.23673 0.95976 1.01083 1.01031 1.23440 0.96558 0.99598 0.99716 1.21244 0.94562 0.94644 0.93249 1.62433 1.13966 1.43403 1.05021 1.19816 0.92260 0.97631 0.83565 1.21074 1.23749 0.98442 1.10837 0.92017 1.24946 0.96874 0.96499 0.96076 1.69950 1.37886 1.29675 1.16237 0.86529 0.80105 0.83708 0.77293 1.20742 1.21270 1.19812 1.20358 0.92592 0.95473 0.90918 1.25927 0.93539 0.94496 0.94079 1.74655 1.13372 1.20165 0.99910 1.85292 1.44965 1.54992 1.13169 1.28703 0.87504 0.91535 0.97338 1.19158 0.98117 0.98325 0.81366 1.21917 0.96894 1.01618 0.99442 1.21954 0.95430 1.00880 1.02414 1.21904 1.03238 0.92306 1.02271 1.71847 1.21974 1.23930 1.02650 0.89638 0.88573 0.88507 0.89810 0.92005 0.97103 0.95673 0.92962 0.92194 0.88755 0.91943 0.90826 0.90983 0.91576 0.90785 0.91456 0.91069 0.90804 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.29 14.32 29.01 0.42 -2.87 16 2 C -0.17 -3.30 7.42 -36.03 -0.27 -3.57 16 3 C 0.09 1.86 5.49 -4.98 -0.03 1.83 16 4 N -0.52 -11.70 4.65 -238.97 -1.11 -12.81 16 5 C 0.19 4.99 4.58 -4.98 -0.02 4.97 16 6 C -0.50 -14.20 8.53 -34.44 -0.29 -14.49 16 7 H 0.06 1.76 7.66 -52.49 -0.40 1.35 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 10 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 14 C 0.14 2.65 5.43 -4.98 -0.03 2.62 16 15 C 0.19 3.51 6.82 -156.38 -1.07 2.45 16 16 N -0.37 -6.83 12.16 30.90 0.38 -6.45 16 17 O 0.07 1.14 10.77 18.09 0.19 1.34 16 18 C 0.17 2.30 6.60 -13.06 -0.09 2.21 16 19 C 0.03 0.29 0.99 -155.66 -0.15 0.14 16 20 C -0.14 -1.17 8.46 37.16 0.31 -0.85 16 21 C -0.15 -1.04 8.07 37.16 0.30 -0.74 16 22 C -0.14 -1.06 8.46 37.16 0.31 -0.75 16 23 N -0.47 -7.56 10.75 -9.87 -0.11 -7.67 16 24 H 0.09 1.39 8.06 -52.49 -0.42 0.97 16 25 H 0.10 1.80 7.84 -52.49 -0.41 1.38 16 26 H 0.10 1.77 6.80 -52.48 -0.36 1.41 16 27 H 0.08 1.84 7.04 -51.93 -0.37 1.47 16 28 H 0.06 1.21 6.54 -51.93 -0.34 0.87 16 29 H 0.01 0.31 6.71 -51.93 -0.35 -0.04 16 30 H 0.03 0.70 7.81 -51.93 -0.41 0.29 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 32 H 0.06 1.11 6.34 -51.93 -0.33 0.78 16 33 H 0.09 1.81 7.86 -51.93 -0.41 1.41 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -31.37 347.34 -7.13 -38.50 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.73 Total: -1.54 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -0.70 Total: -7.52 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.11 Total: -52.85 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.19 Total: 1.34 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.37 -7.13 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292210425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.195 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds