Wall clock time and date at job start Tue Mar 31 2020 01:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00184 * 2 1 4 4 N 1.46898 * 109.46905 * 124.14749 * 3 2 1 5 5 C 1.46901 * 110.99701 * 300.27959 * 4 3 2 6 6 C 1.50697 * 109.47178 * 288.16228 * 5 4 3 7 7 H 1.07997 * 120.00168 * 354.74208 * 6 5 4 8 8 C 1.37881 * 120.00143 * 174.74495 * 6 5 4 9 9 N 1.31515 * 120.00079 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00201 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46842 * 89.99829 * 10 8 6 12 12 H 1.48491 * 109.47198 * 209.99916 * 10 8 6 13 13 H 1.48495 * 109.47050 * 329.99998 * 10 8 6 14 14 C 1.46894 * 111.00339 * 64.23387 * 4 3 2 15 15 C 1.50701 * 109.47098 * 66.04594 * 14 4 3 16 16 N 1.29940 * 126.28795 * 90.02477 * 15 14 4 17 17 O 1.21297 * 110.25389 * 179.73733 * 16 15 14 18 18 C 1.33649 * 109.80968 * 359.97438 * 17 16 15 19 19 C 1.50696 * 126.55103 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46936 * 240.02454 * 19 18 17 21 21 C 1.53009 * 109.47246 * 0.02562 * 19 18 17 22 22 C 1.52996 * 109.47421 * 120.02545 * 19 18 17 23 23 N 1.31125 * 106.89493 * 359.97438 * 18 17 16 24 24 H 1.07996 * 120.00448 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.99933 * 359.97438 * 1 2 3 26 26 H 1.08006 * 119.99357 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47016 * 4.14557 * 3 2 1 28 28 H 1.08996 * 109.47015 * 244.14662 * 3 2 1 29 29 H 1.09001 * 109.47623 * 48.16404 * 5 4 3 30 30 H 1.09002 * 109.47176 * 168.16502 * 5 4 3 31 31 H 0.96993 * 120.00675 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.46990 * 306.04561 * 14 4 3 33 33 H 1.09001 * 109.47151 * 186.04708 * 14 4 3 34 34 H 1.09004 * 109.47365 * 60.00081 * 20 19 18 35 35 H 1.09004 * 109.47114 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47371 * 299.99805 * 20 19 18 37 37 H 1.08998 * 109.46530 * 60.00224 * 21 19 18 38 38 H 1.09002 * 109.46732 * 179.97438 * 21 19 18 39 39 H 1.08993 * 109.46900 * 300.00273 * 21 19 18 40 40 H 1.08999 * 109.47346 * 59.99344 * 22 19 18 41 41 H 1.09004 * 109.47174 * 179.97438 * 22 19 18 42 42 H 1.09003 * 109.46856 * 299.99749 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9816 1.3404 1.1462 5 6 2.2478 1.2138 2.4125 6 6 1.4883 2.4871 2.6824 7 1 1.6113 3.3381 2.0289 8 6 0.6365 2.5658 3.7637 9 7 0.4863 1.5294 4.5593 10 14 -0.3055 4.1439 4.0979 11 1 -1.6097 4.1014 3.3890 12 1 -0.5398 4.2808 5.5578 13 1 0.4842 5.3040 3.6124 14 6 4.0114 0.2994 1.0282 15 6 4.8989 0.6023 -0.1514 16 7 5.9862 1.3135 -0.1332 17 8 6.4727 1.3654 -1.2432 18 6 5.7192 0.6706 -2.1009 19 6 5.9754 0.4854 -3.5743 20 6 4.7975 1.0491 -4.3715 21 6 7.2567 1.2242 -3.9661 22 6 6.1322 -1.0052 -3.8813 23 7 4.7150 0.1800 -1.4151 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3576 2.1323 0.0743 28 1 2.6333 1.3956 -0.9248 29 1 1.5481 0.3807 2.3453 30 1 2.9523 1.0320 3.2241 31 1 -0.1132 1.5845 5.3198 32 1 3.5336 -0.6696 0.8841 33 1 4.6113 0.2770 1.9380 34 1 4.6858 2.1111 -4.1529 35 1 4.9830 0.9156 -5.4374 36 1 3.8847 0.5227 -4.0925 37 1 8.0958 0.8225 -3.3981 38 1 7.4422 1.0898 -5.0317 39 1 7.1450 2.2861 -3.7474 40 1 5.2195 -1.5317 -3.6022 41 1 6.3170 -1.1392 -4.9472 42 1 6.9714 -1.4069 -3.3133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292210425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:41 Heat of formation + Delta-G solvation = 63.615146 kcal Electronic energy + Delta-G solvation = -22267.829523 eV Core-core repulsion = 19057.951013 eV Total energy + Delta-G solvation = -3209.878509 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.65168 -39.36687 -38.34454 -36.56993 -34.85142 -33.89017 -32.65783 -29.94770 -28.47327 -28.21852 -28.00655 -26.15019 -25.24912 -23.75113 -22.71224 -21.02056 -20.18494 -19.17970 -18.45770 -18.23101 -17.09241 -16.66618 -16.29928 -16.09184 -15.62295 -15.36282 -15.03766 -14.92467 -14.20469 -13.95407 -13.83630 -13.35520 -13.27838 -13.16302 -12.96120 -12.80844 -12.73676 -12.60001 -12.55468 -12.48471 -12.37071 -12.21055 -12.07448 -12.02092 -11.96695 -11.85698 -11.39871 -10.89568 -10.60884 -10.22337 -9.15307 -8.19605 -6.28685 0.19932 1.14849 1.39468 1.40643 1.43516 1.52122 1.85618 2.39195 2.55961 3.01133 3.13307 3.36897 3.77793 3.87681 3.88106 4.02736 4.13630 4.21437 4.30272 4.41809 4.53856 4.64367 4.74610 4.76900 4.85944 4.90633 4.97214 4.97397 5.00810 5.03161 5.06319 5.15161 5.25753 5.27534 5.35394 5.42127 5.61635 5.69578 5.85882 6.01814 6.23527 6.46577 6.84536 7.22485 7.39771 8.90857 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.026483 B = 0.004081 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.033223 B = 6859.166341 C = 7136.120606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.184 4.184 3 C 0.100 3.900 4 N -0.535 5.535 5 C 0.210 3.790 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.963 3.037 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.270 1.270 14 C 0.141 3.859 15 C 0.179 3.821 16 N -0.398 5.398 17 O 0.081 5.919 18 C 0.185 3.815 19 C 0.031 3.969 20 C -0.139 4.139 21 C -0.147 4.147 22 C -0.136 4.136 23 N -0.485 5.485 24 H 0.109 0.891 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.071 0.929 29 H -0.006 1.006 30 H 0.001 0.999 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.106 0.894 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.615 -4.583 -20.691 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.203 4.203 3 C -0.028 4.028 4 N -0.259 5.259 5 C 0.084 3.916 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.189 4.189 9 N -0.570 5.570 10 Si 0.787 3.213 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.195 1.195 14 C 0.012 3.988 15 C -0.094 4.094 16 N -0.105 5.105 17 O 0.021 5.979 18 C -0.035 4.035 19 C 0.028 3.972 20 C -0.197 4.197 21 C -0.205 4.205 22 C -0.194 4.194 23 N -0.218 5.218 24 H 0.127 0.873 25 H 0.108 0.892 26 H 0.124 0.876 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.011 0.989 30 H 0.019 0.981 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.710 -4.028 -19.691 22.774 hybrid contribution -0.987 -0.082 0.918 1.350 sum 9.724 -4.110 -18.773 21.537 Atomic orbital electron populations 1.23852 0.95811 1.01939 0.99597 1.23381 0.96885 0.99110 1.00973 1.21108 0.94106 0.94873 0.92718 1.62275 1.14430 1.45083 1.04153 1.19426 0.91281 0.96214 0.84660 1.21310 1.24403 0.98961 1.11061 0.92779 1.25764 0.97659 0.99787 0.95670 1.70059 1.38550 1.31656 1.16696 0.85485 0.78879 0.79546 0.77346 1.19650 1.20626 1.19465 1.20223 0.91952 0.95008 0.91645 1.25655 0.93743 0.95494 0.94517 1.74628 1.13723 1.20722 1.01462 1.85255 1.44874 1.55079 1.12732 1.29787 0.85885 0.89147 0.98696 1.19596 0.99586 0.99842 0.78128 1.21944 0.95755 1.00682 1.01298 1.21991 0.93987 1.00082 1.04395 1.21925 1.02433 0.90683 1.04354 1.71827 1.23218 1.24877 1.01918 0.87252 0.89244 0.87608 0.91770 0.91132 0.98861 0.98115 0.92675 0.91376 0.89358 0.92790 0.87437 0.92677 0.91594 0.87688 0.92057 0.92609 0.87544 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.27 14.32 67.78 0.97 -5.30 16 2 C -0.18 -7.00 7.42 25.65 0.19 -6.81 16 3 C 0.10 4.14 5.49 85.56 0.47 4.61 16 4 N -0.54 -24.59 4.65 -909.96 -4.23 -28.82 16 5 C 0.21 11.28 4.58 85.56 0.39 11.68 16 6 C -0.52 -29.92 8.53 25.60 0.22 -29.70 16 7 H 0.05 3.14 7.66 -2.91 -0.02 3.11 16 8 C 0.01 0.55 5.46 84.66 0.46 1.02 16 9 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 10 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 14 C 0.14 5.63 5.43 85.56 0.46 6.10 16 15 C 0.18 6.59 6.82 138.46 0.94 7.54 16 16 N -0.40 -14.66 12.16 -60.33 -0.73 -15.40 16 17 O 0.08 2.44 10.77 74.78 0.81 3.24 16 18 C 0.19 4.82 6.60 88.38 0.58 5.41 16 19 C 0.03 0.48 0.99 -52.93 -0.05 0.43 16 20 C -0.14 -1.98 8.46 71.98 0.61 -1.37 16 21 C -0.15 -1.60 8.07 71.99 0.58 -1.02 16 22 C -0.14 -1.71 8.46 71.98 0.61 -1.10 16 23 N -0.49 -15.48 10.75 -303.22 -3.26 -18.74 16 24 H 0.11 3.39 8.06 -2.91 -0.02 3.37 16 25 H 0.09 3.33 7.84 -2.91 -0.02 3.31 16 26 H 0.11 3.83 6.80 -2.91 -0.02 3.81 16 27 H 0.06 2.89 7.04 -2.39 -0.02 2.87 16 28 H 0.07 2.78 6.54 -2.39 -0.02 2.77 16 29 H -0.01 -0.36 6.71 -2.39 -0.02 -0.38 16 30 H 0.00 0.05 7.81 -2.39 -0.02 0.03 16 31 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.07 2.57 6.34 -2.39 -0.02 2.56 16 33 H 0.09 3.56 7.86 -2.39 -0.02 3.54 16 34 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -68.25 347.34 2.32 -65.93 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.99 Total: 10.83 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 6.44 Total: -8.53 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -7.94 Total: -118.44 kcal Atomic # 8 Polarization: 2.44 SS G_CDS: 0.81 Total: 3.24 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -68.25 2.32 -65.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292210425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.549 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds