Wall clock time and date at job start Tue Mar 31 2020 03:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 N 1.46496 * 109.47484 * 175.00385 * 3 2 1 7 7 N 1.28469 * 124.88409 * 59.69473 * 6 3 2 8 8 C 1.31814 * 110.06912 * 179.82679 * 7 6 3 9 9 C 1.47714 * 126.51479 * 180.17158 * 8 7 6 10 10 O 1.21567 * 119.99663 * 180.29842 * 9 8 7 11 11 N 1.34777 * 119.99759 * 0.30674 * 9 8 7 12 12 C 1.46501 * 119.99655 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47178 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47160 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00131 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00177 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99504 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47082 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46812 * 119.99757 * 18 16 14 21 21 H 1.48504 * 109.46486 * 239.99346 * 18 16 14 22 22 C 1.41505 * 106.96536 * 0.43093 * 8 7 6 23 23 C 1.35033 * 124.88254 * 240.00254 * 6 3 2 24 24 C 1.50698 * 126.38770 * 359.97438 * 23 6 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 31 31 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 32 32 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 33 33 H 0.96992 * 120.00036 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47248 * 299.99732 * 12 11 9 35 35 H 1.09007 * 109.47227 * 59.99681 * 12 11 9 36 36 H 1.09001 * 109.47132 * 300.00195 * 13 12 11 37 37 H 1.09006 * 109.46712 * 60.00400 * 13 12 11 38 38 H 0.97002 * 119.99430 * 180.02562 * 17 16 14 39 39 H 1.07998 * 127.24642 * 179.71547 * 22 8 7 40 40 H 1.09000 * 109.47521 * 90.00442 * 24 23 6 41 41 H 1.09003 * 109.47455 * 210.00090 * 24 23 6 42 42 H 1.08997 * 109.47517 * 329.99704 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 7 3.5000 1.4443 0.1203 7 7 4.3064 0.8873 -0.7103 8 6 5.5528 1.0705 -0.3227 9 6 6.7673 0.5874 -1.0109 10 8 7.8647 0.8210 -0.5428 11 7 6.6587 -0.1122 -2.1577 12 6 7.8633 -0.5909 -2.8405 13 6 7.4638 -1.3506 -4.1070 14 6 8.7029 -1.8424 -4.8097 15 1 9.6779 -1.6336 -4.3947 16 6 8.5919 -2.5580 -5.9830 17 7 7.4047 -2.8118 -6.4886 18 14 10.1279 -3.1683 -6.8536 19 1 11.3296 -2.7545 -6.0857 20 1 10.0869 -4.6496 -6.9494 21 1 10.1878 -2.5854 -8.2182 22 6 5.5060 1.8128 0.8811 23 6 4.1915 2.0267 1.1233 24 6 3.6086 2.7757 2.2939 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.5488 2.1253 -1.3968 31 1 1.9988 3.1541 -1.3075 32 1 2.0698 1.5875 -2.1492 33 1 5.7832 -0.2987 -2.5310 34 1 8.4908 0.2590 -3.1089 35 1 8.4167 -1.2560 -2.1775 36 1 6.8365 -2.2005 -3.8383 37 1 6.9103 -0.6856 -4.7701 38 1 7.3266 -3.3156 -7.3139 39 1 6.3428 2.1394 1.4806 40 1 3.4245 2.0818 3.1140 41 1 4.3096 3.5445 2.6189 42 1 2.6700 3.2428 1.9955 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342624551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:06 Heat of formation + Delta-G solvation = 13.762424 kcal Electronic energy + Delta-G solvation = -21358.121469 eV Core-core repulsion = 18146.081184 eV Total energy + Delta-G solvation = -3212.040286 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.72716 -38.82577 -36.71003 -34.75551 -33.04279 -32.62356 -31.82141 -29.76703 -29.10363 -27.12910 -25.72320 -24.65166 -23.17286 -21.18462 -20.93075 -20.56552 -19.02749 -17.26498 -16.50300 -16.20376 -16.06885 -15.46255 -14.90014 -14.66272 -14.43403 -14.24446 -13.98919 -13.47705 -13.32764 -13.23354 -13.04280 -12.76857 -12.56963 -12.46293 -12.24286 -12.17419 -11.92164 -11.35867 -11.18389 -11.13020 -11.00571 -10.68209 -10.56816 -10.26657 -9.85827 -9.45572 -9.16194 -9.06033 -8.89634 -8.45887 -8.25027 -6.03997 -4.06412 1.75432 2.17174 2.33849 3.32108 3.39300 3.44732 3.77724 3.82550 4.06940 4.38204 4.44540 4.46949 4.56119 4.69435 4.84980 4.92140 4.99725 5.11635 5.20218 5.26553 5.32980 5.42277 5.51313 5.54750 5.58983 5.64756 5.69918 5.87459 5.89576 5.92845 6.38429 6.43312 6.52944 6.79487 6.81900 7.01919 7.59649 7.69754 7.90634 7.95880 8.21164 8.35242 8.75237 8.99984 9.57949 11.07720 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.021340 B = 0.003368 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.784955 B = 8311.092548 C = 9364.316217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C 0.147 3.853 4 H 0.105 0.895 5 C -0.165 4.165 6 N -0.277 5.277 7 N -0.255 5.255 8 C -0.009 4.009 9 C 0.594 3.406 10 O -0.545 6.545 11 N -0.708 5.708 12 C 0.121 3.879 13 C 0.012 3.988 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.180 4.180 23 C 0.001 3.999 24 C -0.081 4.081 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.403 0.597 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.159 0.841 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.139 10.578 16.448 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.046 3.954 4 H 0.123 0.877 5 C -0.223 4.223 6 N -0.066 5.066 7 N -0.090 5.090 8 C -0.169 4.169 9 C 0.377 3.623 10 O -0.422 6.422 11 N -0.357 5.357 12 C -0.001 4.001 13 C -0.025 4.025 14 C -0.558 4.558 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.208 4.208 23 C -0.123 4.123 24 C -0.140 4.140 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.238 0.762 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.177 0.823 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.177 10.153 15.751 25.421 hybrid contribution 0.783 -0.134 -0.143 0.807 sum -16.394 10.019 15.608 24.754 Atomic orbital electron populations 1.21793 0.94154 1.02721 1.02153 1.21884 0.96719 0.94386 1.04243 1.21661 0.73855 0.98966 1.00908 0.87664 1.22206 1.02477 1.01044 0.96573 1.45634 1.06999 1.37811 1.16179 1.73498 1.00434 1.17362 1.17728 1.22102 0.91287 1.05425 0.98104 1.16959 0.86191 0.78396 0.80746 1.90751 1.26459 1.58580 1.66396 1.46202 1.11830 1.53979 1.23691 1.21769 0.85191 0.98047 0.95068 1.19331 0.97758 0.95157 0.90300 1.21104 0.92717 1.34468 1.07504 0.92149 1.25005 0.96158 0.95999 0.97209 1.69977 1.22386 1.40193 1.20757 0.86458 0.83239 0.78441 0.79441 1.19563 1.20975 1.20981 1.21498 0.95594 1.05098 0.98647 1.21349 0.92066 1.03947 0.94899 1.20317 1.01014 0.99259 0.93380 0.91881 0.91764 0.92532 0.91255 0.89815 0.90111 0.91923 0.90417 0.76244 0.92375 0.92380 0.95879 0.95887 0.92967 0.82335 0.90554 0.89655 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.67 37.16 0.36 -0.46 16 2 C -0.13 -1.06 5.57 -26.73 -0.15 -1.21 16 3 C 0.15 1.18 3.02 -67.93 -0.21 0.98 16 4 H 0.11 0.58 6.55 -51.92 -0.34 0.24 16 5 C -0.17 -1.27 9.13 37.16 0.34 -0.93 16 6 N -0.28 -3.28 3.04 -50.66 -0.15 -3.43 16 7 N -0.26 -3.87 11.33 33.42 0.38 -3.50 16 8 C -0.01 -0.15 7.13 -82.76 -0.59 -0.74 16 9 C 0.59 11.89 7.82 -12.39 -0.10 11.79 16 10 O -0.55 -12.38 16.93 5.31 0.09 -12.29 16 11 N -0.71 -14.24 5.55 -61.29 -0.34 -14.58 16 12 C 0.12 2.76 5.61 -4.04 -0.02 2.74 16 13 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 14 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 15 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 18 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.18 -2.57 10.73 -39.36 -0.42 -3.00 16 23 C 0.00 0.01 6.92 -82.21 -0.57 -0.56 16 24 C -0.08 -0.54 9.92 36.00 0.36 -0.18 16 25 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.42 6.56 -51.93 -0.34 0.08 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.40 7.57 8.20 -40.82 -0.33 7.23 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.33 7.03 -51.93 -0.36 -0.04 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -33.76 352.89 -7.30 -41.07 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.76 Total: 1.56 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.55 Total: -4.96 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.62 Total: -47.47 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.76 -7.30 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342624551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.829 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds