Wall clock time and date at job start Tue Mar 31 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99669 * 2 1 3 5 5 C 1.50696 * 109.47055 * 59.99810 * 4 2 1 6 6 H 1.08007 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00258 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00465 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99610 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47173 * 89.99615 * 9 7 5 11 11 H 1.48502 * 109.46811 * 209.99241 * 9 7 5 12 12 H 1.48495 * 109.47087 * 329.99324 * 9 7 5 13 13 C 1.53006 * 109.46974 * 119.99741 * 2 1 3 14 14 N 1.46504 * 109.46883 * 299.99861 * 13 2 1 15 15 C 1.34776 * 119.99735 * 179.97438 * 14 13 2 16 16 O 1.21282 * 119.99940 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00035 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.47184 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.47184 * 180.02562 * 18 17 15 20 20 N 1.30500 * 125.65284 * 304.69963 * 19 18 17 21 21 C 1.34122 * 109.25473 * 179.88874 * 20 19 18 22 22 C 1.34669 * 108.02325 * 0.37084 * 21 20 19 23 23 N 1.35047 * 125.64777 * 124.99997 * 19 18 17 24 24 H 0.96998 * 126.39482 * 359.97438 * 23 19 18 25 25 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46668 * 300.00213 * 3 2 1 30 30 H 1.09000 * 109.47360 * 59.99707 * 3 2 1 31 31 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.46952 * 299.99863 * 4 2 1 33 33 H 0.96999 * 120.00061 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46509 * 180.02562 * 13 2 1 35 35 H 1.08993 * 109.46955 * 59.99927 * 13 2 1 36 36 H 0.96998 * 120.00303 * 0.02562 * 14 13 2 37 37 H 1.09001 * 109.46665 * 60.00498 * 17 15 14 38 38 H 1.08993 * 109.47304 * 300.00054 * 17 15 14 39 39 H 1.09001 * 109.46801 * 300.00442 * 18 17 15 40 40 H 1.09001 * 109.46998 * 60.00038 * 18 17 15 41 41 H 1.08007 * 125.98742 * 180.10788 * 21 20 19 42 42 H 1.07999 * 126.59043 * 179.81156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4796 6 1 0.9170 0.8674 -2.3806 7 6 1.8711 -0.4818 -3.7319 8 7 1.4323 0.1378 -4.8058 9 14 2.9452 -2.0006 -3.9032 10 1 2.0866 -3.2114 -3.9491 11 1 3.7374 -1.9079 -5.1558 12 1 3.8652 -2.0899 -2.7411 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8768 -0.4912 3.6696 16 8 2.5740 -1.4773 3.7809 17 6 1.3749 0.2196 4.9000 18 6 1.8848 -0.5017 6.1493 19 6 1.3825 0.2088 7.3797 20 7 1.5563 1.4731 7.6523 21 6 0.9727 1.7568 8.8261 22 6 0.4231 0.6235 9.3029 23 7 0.6828 -0.3588 8.3857 24 1 0.4144 -1.2889 8.4469 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7209 -1.2494 32 1 1.6767 -1.7489 -1.2491 33 1 1.6667 -0.1937 -5.6868 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2494 36 1 0.9937 0.7580 2.3564 37 1 0.2849 0.2204 4.8999 38 1 1.7391 1.2469 4.9000 39 1 1.5211 -1.5292 6.1495 40 1 2.9748 -0.5021 6.1492 41 1 0.9512 2.7237 9.3069 42 1 -0.1188 0.5115 10.2303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360423325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:06 Heat of formation + Delta-G solvation = -4.662338 kcal Electronic energy + Delta-G solvation = -21178.328806 eV Core-core repulsion = 17965.489563 eV Total energy + Delta-G solvation = -3212.839243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.31857 -39.70520 -37.29067 -33.86260 -33.63999 -32.77447 -32.08426 -29.27580 -27.82153 -26.55405 -26.53007 -24.51001 -22.31702 -21.88069 -20.74289 -20.10675 -18.36821 -18.14696 -16.96806 -16.58297 -15.94074 -15.63250 -15.12244 -14.59553 -14.24551 -14.11429 -14.04783 -13.75352 -13.41842 -13.18992 -12.85715 -12.68908 -12.31201 -12.27711 -12.17629 -11.42437 -11.23647 -11.11426 -11.00350 -10.61731 -10.48645 -10.33489 -10.30047 -9.96976 -9.92750 -9.73996 -9.43693 -8.99249 -8.80422 -8.69394 -8.53458 -6.04096 -4.01346 1.72795 2.74987 2.75830 2.85299 3.31486 3.39522 3.42805 3.43742 4.15928 4.45740 4.63460 4.74095 4.86356 4.97465 5.13199 5.28368 5.29678 5.36948 5.43652 5.53091 5.64320 5.67461 5.77963 5.83162 6.11149 6.12895 6.18771 6.32279 6.44538 6.48957 6.60054 6.70091 6.90696 7.01954 7.02269 7.05605 7.20269 7.36853 7.66293 7.79735 7.80294 8.35338 8.53148 9.00017 9.58596 11.08625 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.044564 B = 0.002740 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.155104 B =10217.357176 C =10532.714489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.510 4.510 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.720 5.720 15 C 0.509 3.491 16 O -0.551 6.551 17 C -0.131 4.131 18 C -0.017 4.017 19 C 0.212 3.788 20 N -0.487 5.487 21 C -0.027 4.027 22 C -0.062 4.062 23 N -0.567 5.567 24 H 0.419 0.581 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.401 0.599 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.170 0.830 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 0.195 25.877 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.372 5.372 15 C 0.295 3.705 16 O -0.429 6.429 17 C -0.172 4.172 18 C -0.056 4.056 19 C -0.052 4.052 20 N -0.207 5.207 21 C -0.176 4.176 22 C -0.195 4.195 23 N -0.170 5.170 24 H 0.257 0.743 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.236 0.764 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.187 0.813 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.500 0.095 25.268 25.391 hybrid contribution -0.377 -1.399 0.369 1.495 sum -2.877 -1.304 25.636 25.830 Atomic orbital electron populations 1.21779 0.94836 1.01195 1.00806 1.20692 0.95788 0.95954 0.93926 1.21776 1.00481 0.95551 1.00831 1.19594 0.96305 0.95473 0.92652 1.21082 1.31802 1.13337 0.88614 0.90391 1.25006 0.95721 0.96765 0.95997 1.69902 1.45937 1.40590 0.97877 0.86855 0.81334 0.83897 0.77662 1.20411 1.21509 1.18978 1.21638 0.98920 0.95966 0.83253 1.46180 1.53166 1.32013 1.05817 1.20549 0.80478 0.84635 0.84858 1.90693 1.38453 1.26735 1.87039 1.21538 1.02506 1.01661 0.91510 1.19693 1.02363 0.97385 0.86209 1.23365 0.98487 0.90176 0.93149 1.70248 1.22439 1.12222 1.15806 1.22392 1.02028 0.98819 0.94314 1.22764 1.09274 0.89402 0.98108 1.43336 1.43542 1.12216 1.17923 0.74307 0.94981 0.90874 0.93465 0.93380 0.90887 0.94908 0.96349 0.96840 0.92802 0.91808 0.91892 0.76397 0.89022 0.87587 0.89659 0.88275 0.81306 0.80686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.06 -1.14 0.54 -154.50 -0.08 -1.22 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.00 -0.05 3.11 -27.89 -0.09 -0.14 16 5 C -0.51 -13.61 8.20 -34.44 -0.28 -13.89 16 6 H 0.08 2.20 5.92 -52.48 -0.31 1.89 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 9 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.13 2.06 4.57 -4.04 -0.02 2.04 16 14 N -0.72 -9.64 4.96 -60.29 -0.30 -9.94 16 15 C 0.51 6.79 7.83 -10.99 -0.09 6.71 16 16 O -0.55 -9.32 15.98 5.56 0.09 -9.23 16 17 C -0.13 -1.28 5.66 -27.88 -0.16 -1.44 16 18 C -0.02 -0.16 5.13 -27.88 -0.14 -0.30 16 19 C 0.21 2.07 7.43 -155.41 -1.15 0.92 16 20 N -0.49 -5.67 11.22 -10.81 -0.12 -5.79 16 21 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 22 C -0.06 -0.43 12.04 -16.56 -0.20 -0.63 16 23 N -0.57 -4.03 6.15 -10.23 -0.06 -4.09 16 24 H 0.42 1.70 8.96 -40.82 -0.37 1.34 16 25 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 26 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 30 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 31 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 32 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.40 4.57 6.16 -40.82 -0.25 4.32 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 41 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 42 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -33.56 340.67 -7.56 -41.12 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.49 Total: 2.89 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -1.92 Total: -10.48 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.29 Total: -46.25 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.56 -7.56 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360423325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.459 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds