Wall clock time and date at job start Tue Mar 31 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99669 * 2 1 3 5 5 C 1.50696 * 109.47055 * 59.99810 * 4 2 1 6 6 H 1.08007 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00258 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00465 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99610 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47173 * 89.99615 * 9 7 5 11 11 H 1.48502 * 109.46811 * 209.99241 * 9 7 5 12 12 H 1.48495 * 109.47087 * 329.99324 * 9 7 5 13 13 C 1.53006 * 109.46974 * 119.99741 * 2 1 3 14 14 N 1.46504 * 109.46883 * 299.99861 * 13 2 1 15 15 C 1.34776 * 119.99735 * 179.97438 * 14 13 2 16 16 O 1.21282 * 119.99940 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00035 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.47184 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.47184 * 180.02562 * 18 17 15 20 20 N 1.30500 * 125.65284 * 304.69963 * 19 18 17 21 21 C 1.34122 * 109.25473 * 179.88874 * 20 19 18 22 22 C 1.34669 * 108.02325 * 0.37084 * 21 20 19 23 23 N 1.35047 * 125.64777 * 124.99997 * 19 18 17 24 24 H 0.96998 * 126.39482 * 359.97438 * 23 19 18 25 25 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46668 * 300.00213 * 3 2 1 30 30 H 1.09000 * 109.47360 * 59.99707 * 3 2 1 31 31 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.46952 * 299.99863 * 4 2 1 33 33 H 0.96999 * 120.00061 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46509 * 180.02562 * 13 2 1 35 35 H 1.08993 * 109.46955 * 59.99927 * 13 2 1 36 36 H 0.96998 * 120.00303 * 0.02562 * 14 13 2 37 37 H 1.09001 * 109.46665 * 60.00498 * 17 15 14 38 38 H 1.08993 * 109.47304 * 300.00054 * 17 15 14 39 39 H 1.09001 * 109.46801 * 300.00442 * 18 17 15 40 40 H 1.09001 * 109.46998 * 60.00038 * 18 17 15 41 41 H 1.08007 * 125.98742 * 180.10788 * 21 20 19 42 42 H 1.07999 * 126.59043 * 179.81156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4796 6 1 0.9170 0.8674 -2.3806 7 6 1.8711 -0.4818 -3.7319 8 7 1.4323 0.1378 -4.8058 9 14 2.9452 -2.0006 -3.9032 10 1 2.0866 -3.2114 -3.9491 11 1 3.7374 -1.9079 -5.1558 12 1 3.8652 -2.0899 -2.7411 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8768 -0.4912 3.6696 16 8 2.5740 -1.4773 3.7809 17 6 1.3749 0.2196 4.9000 18 6 1.8848 -0.5017 6.1493 19 6 1.3825 0.2088 7.3797 20 7 1.5563 1.4731 7.6523 21 6 0.9727 1.7568 8.8261 22 6 0.4231 0.6235 9.3029 23 7 0.6828 -0.3588 8.3857 24 1 0.4144 -1.2889 8.4469 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7209 -1.2494 32 1 1.6767 -1.7489 -1.2491 33 1 1.6667 -0.1937 -5.6868 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2494 36 1 0.9937 0.7580 2.3564 37 1 0.2849 0.2204 4.8999 38 1 1.7391 1.2469 4.9000 39 1 1.5211 -1.5292 6.1495 40 1 2.9748 -0.5021 6.1492 41 1 0.9512 2.7237 9.3069 42 1 -0.1188 0.5115 10.2303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360423325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:05 Heat of formation + Delta-G solvation = -27.554929 kcal Electronic energy + Delta-G solvation = -21179.321503 eV Core-core repulsion = 17965.489563 eV Total energy + Delta-G solvation = -3213.831940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.92753 -40.85813 -38.72612 -35.17882 -34.66559 -33.92696 -33.39992 -30.15942 -29.54906 -27.97185 -27.71085 -25.57754 -24.04056 -22.46744 -21.56862 -21.06308 -19.72356 -18.93103 -18.88834 -17.73450 -16.90058 -16.79055 -16.17189 -15.91948 -15.51257 -15.36411 -15.05675 -14.86610 -14.50467 -14.30852 -14.18110 -14.13621 -13.65845 -13.61020 -13.01111 -12.91140 -12.81708 -12.59336 -12.29088 -12.16129 -12.14750 -11.76765 -11.50003 -11.28133 -10.99112 -10.96863 -10.92111 -10.79288 -10.70113 -9.99976 -9.30248 -8.21970 -6.22027 1.14200 1.35991 1.38888 1.49003 1.70199 2.09219 2.22510 2.39403 2.47173 3.13419 3.48036 3.88249 3.96883 4.01202 4.07727 4.18320 4.20623 4.38300 4.54296 4.64859 4.66321 4.72005 4.74394 4.82360 4.96659 4.99490 5.03417 5.05979 5.11073 5.22064 5.31417 5.38879 5.42093 5.51526 5.58352 5.70826 5.77681 5.86230 6.38627 6.53686 6.62798 6.85041 7.18078 7.30625 7.40692 8.93636 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.044564 B = 0.002740 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.155104 B =10217.357176 C =10532.714489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.058 4.058 3 C -0.125 4.125 4 C -0.004 4.004 5 C -0.501 4.501 6 H 0.052 0.948 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.935 3.065 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.252 1.252 13 C 0.138 3.862 14 N -0.713 5.713 15 C 0.511 3.489 16 O -0.587 6.587 17 C -0.118 4.118 18 C -0.012 4.012 19 C 0.196 3.804 20 N -0.524 5.524 21 C -0.062 4.062 22 C -0.042 4.042 23 N -0.558 5.558 24 H 0.434 0.566 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.262 0.738 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.413 0.587 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.182 0.818 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.976 -0.500 28.750 29.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.059 4.059 3 C -0.182 4.182 4 C -0.042 4.042 5 C -0.539 4.539 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.760 3.240 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.175 1.175 13 C 0.014 3.986 14 N -0.365 5.365 15 C 0.299 3.701 16 O -0.468 6.468 17 C -0.158 4.158 18 C -0.051 4.051 19 C -0.068 4.068 20 N -0.245 5.245 21 C -0.209 4.209 22 C -0.176 4.176 23 N -0.162 5.162 24 H 0.274 0.726 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.250 0.750 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.199 0.801 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.056 -0.600 28.166 28.338 hybrid contribution -0.261 -1.115 -0.437 1.226 sum -3.317 -1.715 27.729 27.979 Atomic orbital electron populations 1.21707 0.93882 1.01269 1.01262 1.20556 0.96502 0.96037 0.92784 1.21711 1.00212 0.95022 1.01257 1.19576 0.95926 0.95525 0.93199 1.21376 1.30179 1.12255 0.90109 0.93010 1.25852 0.97494 0.99960 0.95913 1.70042 1.48161 1.42707 0.98429 0.85885 0.79860 0.80368 0.77893 1.19661 1.21534 1.17549 1.21262 0.98199 0.95610 0.83541 1.46030 1.53241 1.32209 1.05040 1.21113 0.79490 0.84050 0.85439 1.90684 1.40067 1.28520 1.87507 1.21472 1.03628 1.01129 0.89615 1.19593 1.01451 0.97891 0.86195 1.23243 0.99629 0.90048 0.93883 1.70167 1.23592 1.13448 1.17302 1.22799 1.03282 1.00466 0.94375 1.23331 1.07437 0.88356 0.98490 1.43337 1.42591 1.13084 1.17188 0.72568 0.91184 0.93737 0.93580 0.93775 0.93692 0.91221 0.96777 0.96787 0.92882 0.92865 0.92527 0.74965 0.86847 0.87204 0.88707 0.89828 0.80124 0.77042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 2 C -0.06 -2.04 0.54 -52.18 -0.03 -2.07 16 3 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 4 C 0.00 -0.20 3.11 29.85 0.09 -0.10 16 5 C -0.50 -27.21 8.20 25.60 0.21 -27.00 16 6 H 0.05 3.03 5.92 -2.91 -0.02 3.01 16 7 C 0.00 0.23 5.47 84.66 0.46 0.69 16 8 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 9 Si 0.93 44.47 27.47 68.60 1.88 46.36 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 12 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 13 C 0.14 4.30 4.57 86.38 0.39 4.69 16 14 N -0.71 -17.26 4.96 -463.05 -2.30 -19.56 16 15 C 0.51 12.56 7.83 87.66 0.69 13.25 16 16 O -0.59 -19.08 15.98 -3.04 -0.05 -19.13 16 17 C -0.12 -2.03 5.66 29.85 0.17 -1.86 16 18 C -0.01 -0.20 5.13 29.85 0.15 -0.05 16 19 C 0.20 3.47 7.43 138.13 1.03 4.50 16 20 N -0.52 -11.50 11.22 -188.13 -2.11 -13.61 16 21 C -0.06 -1.03 11.87 83.52 0.99 -0.04 16 22 C -0.04 -0.45 12.04 83.09 1.00 0.55 16 23 N -0.56 -6.42 6.15 -186.27 -1.15 -7.57 16 24 H 0.43 2.23 8.96 -92.71 -0.83 1.39 16 25 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 26 H 0.04 1.71 6.62 -2.39 -0.02 1.69 16 27 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.04 1.75 6.62 -2.39 -0.02 1.73 16 30 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 31 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 32 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 33 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.41 7.97 6.16 -92.71 -0.57 7.39 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.09 1.41 8.10 -2.39 -0.02 1.39 16 40 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 41 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.21 0.56 8.06 -2.91 -0.02 0.54 16 Total: -1.00 -74.25 340.67 2.47 -71.78 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -0.43 Total: 14.75 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 6.32 Total: -14.49 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -5.25 Total: -99.27 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.05 Total: -19.13 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Total: -74.25 2.47 -71.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360423325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.220 kcal (2) G-P(sol) polarization free energy of solvation -74.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds