Wall clock time and date at job start Tue Mar 31 2020 01:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.35123 * 125.55269 * 274.71930 * 6 5 4 8 8 C 1.40983 * 108.23924 * 179.84168 * 7 6 5 9 9 N 1.33304 * 126.35608 * 180.16206 * 8 7 6 10 10 C 1.32904 * 119.99945 * 180.27725 * 9 8 7 11 11 O 1.21593 * 120.00113 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99679 * 180.02562 * 10 9 8 13 13 C 1.53008 * 109.46898 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.46979 * 179.97438 * 13 12 10 15 15 H 1.08006 * 120.00530 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99965 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00112 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00328 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.47041 * 90.00182 * 18 16 14 20 20 H 1.48500 * 109.47466 * 210.00174 * 18 16 14 21 21 H 1.48499 * 109.46993 * 330.00492 * 18 16 14 22 22 N 1.37285 * 107.28669 * 0.41968 * 8 7 6 23 23 H 0.96996 * 126.34724 * 179.75068 * 22 8 7 24 24 N 1.36337 * 125.54805 * 95.02370 * 6 5 4 25 25 H 0.97002 * 125.86621 * 359.97438 * 24 6 5 26 26 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 28 28 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 29 29 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 30 30 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 32 32 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 33 33 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 34 34 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 1.08004 * 125.87748 * 359.96165 * 7 6 5 38 38 H 1.08996 * 109.47491 * 299.99423 * 12 10 9 39 39 H 1.08994 * 109.47357 * 59.99922 * 12 10 9 40 40 H 1.08996 * 109.46856 * 300.00152 * 13 12 10 41 41 H 1.09003 * 109.46716 * 59.99775 * 13 12 10 42 42 H 0.97002 * 120.00518 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 6 2.1383 -2.9060 2.4180 7 6 3.3725 -3.4345 2.5707 8 6 3.4519 -4.0055 3.8572 9 7 4.5100 -4.6217 4.3843 10 6 4.4437 -5.1210 5.6142 11 8 3.4181 -5.0153 6.2589 12 6 5.6400 -5.8171 6.2103 13 6 5.3009 -6.2932 7.6243 14 6 6.4970 -6.9899 8.2201 15 1 7.4081 -7.0834 7.6478 16 6 6.4286 -7.5070 9.4964 17 7 5.3193 -7.3928 10.1936 18 14 7.9114 -8.3700 10.2353 19 1 8.7558 -7.3789 10.9496 20 1 7.4534 -9.4103 11.1910 21 1 8.7039 -9.0066 9.1528 22 7 2.2355 -3.8143 4.4643 23 1 1.9866 -4.1025 5.3563 24 7 1.4201 -3.1254 3.5560 25 1 0.5025 -2.8514 3.7106 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6442 1.2950 35 1 2.0699 -2.6550 0.3001 36 1 0.5490 -2.2724 1.1420 37 1 4.1627 -3.4200 1.8346 38 1 5.9069 -6.6743 5.5923 39 1 6.4801 -5.1240 6.2524 40 1 5.0342 -5.4358 8.2422 41 1 4.4606 -6.9863 7.5825 42 1 5.2710 -7.7570 11.0914 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360448815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:06 Heat of formation + Delta-G solvation = 27.462819 kcal Electronic energy + Delta-G solvation = -20700.649609 eV Core-core repulsion = 17489.203417 eV Total energy + Delta-G solvation = -3211.446192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56569 -38.64837 -37.44811 -34.01258 -33.19013 -32.89844 -30.86911 -29.85481 -29.42416 -27.66991 -25.65635 -24.78092 -22.60696 -21.01598 -20.59748 -20.43692 -19.20876 -17.98087 -16.42744 -16.05136 -15.60020 -15.46902 -15.36410 -14.72546 -14.38390 -14.20674 -14.04630 -13.95449 -13.78644 -13.30365 -12.76779 -12.73158 -12.36998 -12.09797 -12.03107 -11.84624 -11.39549 -11.13530 -11.07752 -11.05002 -10.82996 -10.60007 -10.46292 -9.87568 -9.70536 -9.56654 -9.35418 -8.91298 -8.52328 -8.19135 -7.54765 -5.83495 -3.85965 1.09262 1.66808 2.41199 3.42348 3.47312 3.51868 3.81496 3.99033 4.25410 4.32321 4.34571 4.46606 4.57968 4.59708 4.88600 4.91446 5.09611 5.15648 5.17860 5.23307 5.31653 5.38081 5.47965 5.51189 5.54064 5.70110 5.72008 5.83071 5.87978 5.94274 6.24514 6.65879 6.67687 6.71210 6.95087 7.27441 7.69806 7.90138 8.06854 8.09310 8.23950 8.58268 9.20928 9.28798 9.76442 11.27847 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.053861 B = 0.002386 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.732472 B =11734.445304 C =11940.948456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.113 4.113 5 C -0.063 4.063 6 C 0.175 3.825 7 C -0.263 4.263 8 C 0.474 3.526 9 N -0.646 5.646 10 C 0.485 3.515 11 O -0.590 6.590 12 C -0.109 4.109 13 C 0.035 3.965 14 C -0.519 4.519 15 H 0.057 0.943 16 C 0.054 3.946 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.273 1.273 22 N -0.488 5.488 23 H 0.456 0.544 24 N -0.494 5.494 25 H 0.440 0.560 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.168 0.832 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.967 17.450 -24.937 33.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.151 4.151 5 C -0.102 4.102 6 C 0.053 3.947 7 C -0.294 4.294 8 C 0.222 3.778 9 N -0.406 5.406 10 C 0.276 3.724 11 O -0.472 6.472 12 C -0.149 4.149 13 C -0.003 4.003 14 C -0.558 4.558 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.198 1.198 22 N -0.230 5.230 23 H 0.315 0.685 24 N -0.212 5.212 25 H 0.286 0.714 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.186 0.814 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.056 17.208 -24.306 32.517 hybrid contribution -0.370 -0.491 1.510 1.631 sum -13.426 16.717 -22.795 31.294 Atomic orbital electron populations 1.21940 0.95311 1.01825 1.01933 1.21126 0.95817 0.96464 0.98129 1.21846 1.01297 0.95715 1.01819 1.21691 1.02369 0.92627 0.98409 1.20561 1.01951 0.95208 0.92504 1.21008 0.91599 0.94733 0.87349 1.20559 0.98431 1.12580 0.97821 1.21015 0.79595 0.85996 0.91231 1.70137 1.22309 1.29813 1.18358 1.22173 0.89797 0.77447 0.82978 1.90292 1.33145 1.58228 1.65496 1.21461 0.94283 0.99273 0.99849 1.18913 0.96538 0.96461 0.88360 1.21313 0.98868 1.36062 0.99552 0.92519 1.25043 0.95910 0.96440 0.97247 1.70010 1.26119 1.46321 1.10946 0.86586 0.83003 0.79332 0.79011 1.20740 1.21357 1.19830 1.47456 1.09062 1.51947 1.14564 0.68535 1.44200 1.12919 1.53957 1.10116 0.71445 0.92438 0.92691 0.92643 0.90705 0.92380 0.92643 0.92688 0.91587 0.90468 0.87862 0.89823 0.81405 0.90358 0.90365 0.96292 0.96280 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 8.95 37.16 0.33 -0.13 16 2 C -0.10 -0.33 2.92 -90.62 -0.26 -0.59 16 3 C -0.15 -0.59 9.19 37.16 0.34 -0.24 16 4 C -0.11 -0.45 4.66 -26.74 -0.12 -0.57 16 5 C -0.06 -0.23 5.50 -27.88 -0.15 -0.39 16 6 C 0.17 1.35 6.44 -81.70 -0.53 0.82 16 7 C -0.26 -2.97 10.71 -39.65 -0.42 -3.39 16 8 C 0.47 7.73 7.72 -155.19 -1.20 6.53 16 9 N -0.65 -13.20 10.51 -11.59 -0.12 -13.32 16 10 C 0.49 11.50 7.71 -11.81 -0.09 11.41 16 11 O -0.59 -14.75 13.33 5.28 0.07 -14.68 16 12 C -0.11 -2.72 5.71 -27.88 -0.16 -2.88 16 13 C 0.03 1.04 4.26 -27.88 -0.12 0.92 16 14 C -0.52 -16.00 9.11 -34.44 -0.31 -16.32 16 15 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 16 C 0.05 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -28.98 13.29 55.43 0.74 -28.24 16 18 Si 0.89 22.92 29.54 -169.99 -5.02 17.90 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 22 N -0.49 -6.90 7.04 31.32 0.22 -6.68 16 23 H 0.46 7.29 6.36 -182.56 -1.16 6.13 16 24 N -0.49 -4.18 7.40 33.68 0.25 -3.93 16 25 H 0.44 2.06 8.96 -182.55 -1.64 0.42 16 26 H 0.06 0.14 6.56 -51.93 -0.34 -0.20 16 27 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.24 8.14 -51.92 -0.42 -0.19 16 31 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.18 6.56 -51.93 -0.34 -0.16 16 37 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 39 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.02 0.60 8.10 -51.93 -0.42 0.18 16 41 H 0.02 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -38.84 349.09 -10.34 -49.17 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.93 Total: -2.22 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.80 Total: -3.25 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 1.08 Total: -52.17 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.07 Total: -14.68 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.84 -10.34 -49.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360448815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.636 kcal (2) G-P(sol) polarization free energy of solvation -38.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds