Wall clock time and date at job start Tue Mar 31 2020 01:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.35123 * 125.55269 * 274.71930 * 6 5 4 8 8 C 1.40983 * 108.23924 * 179.84168 * 7 6 5 9 9 N 1.33304 * 126.35608 * 180.16206 * 8 7 6 10 10 C 1.32904 * 119.99945 * 180.27725 * 9 8 7 11 11 O 1.21593 * 120.00113 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99679 * 180.02562 * 10 9 8 13 13 C 1.53008 * 109.46898 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.46979 * 179.97438 * 13 12 10 15 15 H 1.08006 * 120.00530 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99965 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00112 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00328 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.47041 * 90.00182 * 18 16 14 20 20 H 1.48500 * 109.47466 * 210.00174 * 18 16 14 21 21 H 1.48499 * 109.46993 * 330.00492 * 18 16 14 22 22 N 1.37285 * 107.28669 * 0.41968 * 8 7 6 23 23 H 0.96996 * 126.34724 * 179.75068 * 22 8 7 24 24 N 1.36337 * 125.54805 * 95.02370 * 6 5 4 25 25 H 0.97002 * 125.86621 * 359.97438 * 24 6 5 26 26 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 28 28 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 29 29 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 30 30 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 32 32 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 33 33 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 34 34 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 1.08004 * 125.87748 * 359.96165 * 7 6 5 38 38 H 1.08996 * 109.47491 * 299.99423 * 12 10 9 39 39 H 1.08994 * 109.47357 * 59.99922 * 12 10 9 40 40 H 1.08996 * 109.46856 * 300.00152 * 13 12 10 41 41 H 1.09003 * 109.46716 * 59.99775 * 13 12 10 42 42 H 0.97002 * 120.00518 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 6 2.1383 -2.9060 2.4180 7 6 3.3725 -3.4345 2.5707 8 6 3.4519 -4.0055 3.8572 9 7 4.5100 -4.6217 4.3843 10 6 4.4437 -5.1210 5.6142 11 8 3.4181 -5.0153 6.2589 12 6 5.6400 -5.8171 6.2103 13 6 5.3009 -6.2932 7.6243 14 6 6.4970 -6.9899 8.2201 15 1 7.4081 -7.0834 7.6478 16 6 6.4286 -7.5070 9.4964 17 7 5.3193 -7.3928 10.1936 18 14 7.9114 -8.3700 10.2353 19 1 8.7558 -7.3789 10.9496 20 1 7.4534 -9.4103 11.1910 21 1 8.7039 -9.0066 9.1528 22 7 2.2355 -3.8143 4.4643 23 1 1.9866 -4.1025 5.3563 24 7 1.4201 -3.1254 3.5560 25 1 0.5025 -2.8514 3.7106 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6442 1.2950 35 1 2.0699 -2.6550 0.3001 36 1 0.5490 -2.2724 1.1420 37 1 4.1627 -3.4200 1.8346 38 1 5.9069 -6.6743 5.5923 39 1 6.4801 -5.1240 6.2524 40 1 5.0342 -5.4358 8.2422 41 1 4.4606 -6.9863 7.5825 42 1 5.2710 -7.7570 11.0914 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360448815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:05 Heat of formation + Delta-G solvation = -0.493184 kcal Electronic energy + Delta-G solvation = -20701.861872 eV Core-core repulsion = 17489.203417 eV Total energy + Delta-G solvation = -3212.658455 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.63432 -40.22299 -37.84111 -35.70593 -35.01207 -33.75711 -32.98101 -31.00216 -30.26199 -27.90901 -27.78779 -25.35687 -24.34294 -22.16230 -21.97919 -20.76578 -20.41995 -19.37058 -18.56258 -17.29215 -16.72992 -16.59391 -16.42247 -15.99011 -15.86256 -15.80706 -15.02136 -14.54246 -14.34728 -14.27742 -14.15292 -14.11015 -13.31453 -13.23350 -13.03020 -12.82189 -12.66986 -12.46852 -12.14662 -11.97328 -11.89602 -11.69326 -11.61371 -11.48652 -11.40311 -11.32704 -11.16329 -10.58780 -10.51043 -10.18578 -8.78955 -8.19919 -6.34148 0.01236 0.68272 1.24824 1.39143 1.43609 1.55123 2.41090 2.70747 2.88430 3.11565 3.14034 3.61051 4.01929 4.03058 4.16508 4.23120 4.32179 4.55049 4.59072 4.60932 4.65475 4.82075 4.86781 4.90198 4.95377 5.02130 5.09047 5.15785 5.21915 5.26275 5.27025 5.43813 5.46573 5.53549 5.60331 5.62818 5.64299 5.82060 5.97965 6.18457 6.41257 6.70895 6.83274 7.34967 7.69588 8.93127 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.053861 B = 0.002386 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.732472 B =11734.445304 C =11940.948456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.153 4.153 4 C -0.111 4.111 5 C -0.057 4.057 6 C 0.217 3.783 7 C -0.282 4.282 8 C 0.445 3.555 9 N -0.672 5.672 10 C 0.475 3.525 11 O -0.631 6.631 12 C -0.100 4.100 13 C 0.048 3.952 14 C -0.546 4.546 15 H 0.070 0.930 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.980 3.020 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.258 1.258 22 N -0.498 5.498 23 H 0.449 0.551 24 N -0.462 5.462 25 H 0.462 0.538 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.187 0.813 38 H 0.086 0.914 39 H 0.086 0.914 40 H -0.020 1.020 41 H -0.020 1.020 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.318 18.244 -27.468 35.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.111 4.111 3 C -0.210 4.210 4 C -0.149 4.149 5 C -0.096 4.096 6 C 0.093 3.907 7 C -0.312 4.312 8 C 0.196 3.804 9 N -0.436 5.436 10 C 0.265 3.735 11 O -0.516 6.516 12 C -0.140 4.140 13 C 0.011 3.989 14 C -0.584 4.584 15 H 0.088 0.912 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.803 3.197 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.181 1.181 22 N -0.234 5.234 23 H 0.305 0.695 24 N -0.182 5.182 25 H 0.312 0.688 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.145 0.855 36 H 0.130 0.870 37 H 0.204 0.796 38 H 0.104 0.896 39 H 0.104 0.896 40 H -0.002 1.002 41 H -0.001 1.001 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.475 18.055 -26.896 35.085 hybrid contribution -0.544 -0.517 2.096 2.226 sum -14.019 17.538 -24.799 33.454 Atomic orbital electron populations 1.21959 0.94861 1.02573 1.01746 1.21088 0.96099 0.95857 0.98035 1.21875 1.01096 0.96364 1.01685 1.21662 1.02014 0.92558 0.98704 1.20827 1.03795 0.94409 0.90570 1.21719 0.89940 0.91617 0.87459 1.20811 1.00605 1.13522 0.96212 1.21448 0.79553 0.86443 0.92916 1.69967 1.24759 1.32194 1.16644 1.21935 0.88862 0.78320 0.84410 1.90263 1.33973 1.60696 1.66647 1.21219 0.95703 0.99986 0.97051 1.18660 0.95267 0.94025 0.90982 1.21724 0.99444 1.36744 1.00512 0.91179 1.26207 0.99782 0.96978 0.97612 1.70183 1.28948 1.47131 1.11530 0.85233 0.78188 0.78035 0.78237 1.19423 1.20569 1.18142 1.47402 1.09702 1.51359 1.14926 0.69512 1.44480 1.13383 1.51333 1.08970 0.68795 0.91178 0.93058 0.92795 0.89811 0.92768 0.92436 0.93230 0.91938 0.91172 0.85543 0.86981 0.79595 0.89585 0.89603 1.00170 1.00139 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 8.95 71.98 0.64 0.24 16 2 C -0.09 -0.32 2.92 -10.80 -0.03 -0.35 16 3 C -0.15 -0.90 9.19 71.98 0.66 -0.23 16 4 C -0.11 -0.47 4.66 30.59 0.14 -0.33 16 5 C -0.06 -0.14 5.50 29.85 0.16 0.02 16 6 C 0.22 2.57 6.44 41.14 0.26 2.84 16 7 C -0.28 -5.78 10.71 22.22 0.24 -5.54 16 8 C 0.44 14.55 7.72 133.83 1.03 15.58 16 9 N -0.67 -28.51 10.51 -309.88 -3.26 -31.77 16 10 C 0.48 23.91 7.71 87.95 0.68 24.59 16 11 O -0.63 -33.85 13.33 -4.01 -0.05 -33.90 16 12 C -0.10 -5.27 5.71 29.85 0.17 -5.10 16 13 C 0.05 3.07 4.26 29.85 0.13 3.19 16 14 C -0.55 -34.74 9.11 25.60 0.23 -34.50 16 15 H 0.07 4.16 7.74 -2.91 -0.02 4.14 16 16 C -0.01 -0.55 5.46 84.65 0.46 -0.09 16 17 N -0.94 -62.80 13.29 21.45 0.28 -62.51 16 18 Si 0.98 47.51 29.54 68.60 2.03 49.54 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 22 N -0.50 -13.98 7.04 -54.81 -0.39 -14.37 16 23 H 0.45 14.91 6.36 -213.29 -1.36 13.56 16 24 N -0.46 -6.52 7.40 -47.36 -0.35 -6.87 16 25 H 0.46 2.60 8.96 -213.28 -1.91 0.69 16 26 H 0.07 0.01 6.56 -2.39 -0.02 0.00 16 27 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.11 -0.21 6.56 -2.39 -0.02 -0.23 16 37 H 0.19 3.09 8.06 -2.91 -0.02 3.06 16 38 H 0.09 4.29 8.14 -2.39 -0.02 4.27 16 39 H 0.09 4.28 8.14 -2.39 -0.02 4.26 16 40 H -0.02 -1.41 8.10 -2.39 -0.02 -1.43 16 41 H -0.02 -1.39 8.10 -2.39 -0.02 -1.40 16 42 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 Total: -1.00 -90.99 349.09 0.81 -90.18 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -2.25 Total: 9.38 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 4.79 Total: 0.32 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -3.71 Total: -115.52 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.05 Total: -33.90 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -90.99 0.81 -90.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360448815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.686 kcal (2) G-P(sol) polarization free energy of solvation -90.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds