Wall clock time and date at job start Tue Mar 31 2020 02:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47117 * 2 1 4 4 C 1.53005 * 109.46782 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46972 * 179.97438 * 4 3 2 6 6 N 1.40040 * 125.97374 * 270.15380 * 5 4 3 7 7 C 1.30779 * 108.43098 * 180.28849 * 6 5 4 8 8 C 1.40412 * 108.20987 * 359.74878 * 7 6 5 9 9 N 1.40156 * 126.15197 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99829 * 0.02562 * 9 8 7 11 11 O 1.21794 * 119.99849 * 0.02562 * 10 9 8 12 12 C 1.41804 * 120.00191 * 180.02562 * 10 9 8 13 13 H 1.07994 * 120.00119 * 0.02562 * 12 10 9 14 14 C 1.40125 * 119.99971 * 179.97438 * 12 10 9 15 15 N 1.30634 * 120.00374 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00022 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.46932 * 60.00194 * 16 14 12 18 18 H 1.48500 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47034 * 300.00255 * 16 14 12 20 20 C 1.35170 * 125.97476 * 89.99794 * 5 4 3 21 21 C 1.50706 * 126.20136 * 359.97438 * 20 5 4 22 22 C 1.52997 * 109.47238 * 119.71282 * 21 20 5 23 23 C 1.52992 * 109.47161 * 239.71817 * 21 20 5 24 24 H 1.09006 * 109.46788 * 300.00350 * 1 2 3 25 25 H 1.08995 * 109.46826 * 59.99918 * 1 2 3 26 26 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46851 * 239.99242 * 2 1 3 28 28 H 1.09004 * 109.46601 * 119.99962 * 2 1 3 29 29 H 1.09000 * 109.47156 * 60.00046 * 3 2 1 30 30 H 1.09004 * 109.47354 * 299.99501 * 3 2 1 31 31 H 1.09000 * 109.47341 * 60.00033 * 4 3 2 32 32 H 1.09003 * 109.46849 * 299.99275 * 4 3 2 33 33 H 1.08002 * 125.89678 * 179.76484 * 7 6 5 34 34 H 0.96996 * 120.00307 * 180.02562 * 9 8 7 35 35 H 0.97004 * 120.00204 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.46456 * 359.71115 * 21 20 5 37 37 H 1.09002 * 109.47153 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.46832 * 60.00314 * 22 21 20 39 39 H 1.09004 * 109.47261 * 300.00295 * 22 21 20 40 40 H 1.09001 * 109.47066 * 299.99783 * 23 21 20 41 41 H 1.08996 * 109.47747 * 59.99449 * 23 21 20 42 42 H 1.09002 * 109.47103 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 7 4.3294 3.5999 -1.1349 7 6 4.7521 4.7732 -0.7413 8 6 4.7602 4.7883 0.6627 9 7 5.1484 5.8619 1.4758 10 6 5.5624 7.0159 0.9160 11 8 5.5988 7.1259 -0.2964 12 6 5.9557 8.1019 1.7386 13 1 5.9239 8.0043 2.8136 14 6 6.3867 9.3015 1.1565 15 7 6.4257 9.4195 -0.1439 16 14 6.9055 10.7320 2.2401 17 1 8.0472 10.3172 3.0942 18 1 7.3151 11.8762 1.3867 19 1 5.7660 11.1398 3.1006 20 6 4.3236 3.5726 1.0923 21 6 4.1699 3.1383 2.5272 22 6 5.5260 3.2150 3.2314 23 6 3.1748 4.0598 3.2351 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9331 0.9287 -0.8909 32 1 3.9337 0.9285 0.8892 33 1 5.0443 5.5897 -1.3850 34 1 5.1191 5.7744 2.4414 35 1 6.7237 10.2501 -0.5469 36 1 3.8014 2.1130 2.5589 37 1 5.4149 2.9004 4.2691 38 1 5.8944 4.2403 3.1996 39 1 6.2350 2.5584 2.7270 40 1 3.5431 5.0852 3.2034 41 1 2.2086 4.0053 2.7335 42 1 3.0632 3.7454 4.2729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361281796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:33 Heat of formation + Delta-G solvation = 15.003990 kcal Electronic energy + Delta-G solvation = -22249.521407 eV Core-core repulsion = 19037.534959 eV Total energy + Delta-G solvation = -3211.986447 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74994 -37.44254 -35.89037 -35.33271 -33.28564 -32.32386 -31.57744 -28.57510 -27.85129 -26.98794 -26.10808 -23.69546 -22.22974 -21.36752 -21.02705 -19.54349 -18.85176 -17.02336 -16.15980 -15.84713 -15.32214 -15.00866 -14.88611 -14.22041 -13.85346 -13.72252 -13.46397 -13.26910 -12.90079 -12.77351 -12.66382 -12.31089 -12.25737 -11.99555 -11.54574 -11.39597 -11.32385 -11.24501 -11.20474 -11.05807 -11.02174 -10.78899 -10.65133 -10.42092 -10.32028 -9.91845 -9.39676 -8.81514 -8.51890 -7.60757 -6.48939 -6.29090 -4.79818 2.48566 3.04679 3.10784 3.16427 3.18207 3.70317 4.04236 4.55466 4.65642 4.68930 4.81270 4.88830 4.94862 4.98742 5.16019 5.31368 5.34191 5.43402 5.53987 5.57613 5.61250 5.72114 5.76967 5.86464 5.88801 5.91036 5.94959 6.00355 6.04385 6.11367 6.17615 6.38372 6.41305 6.54716 6.69271 7.29086 7.41124 7.66505 7.95155 8.12719 8.38017 8.51440 8.88669 9.46255 10.48036 10.71348 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.028123 B = 0.004093 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.392396 B = 6838.880315 C = 7316.768561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.137 4.137 4 C 0.145 3.855 5 N -0.380 5.380 6 N -0.304 5.304 7 C 0.048 3.952 8 C 0.064 3.936 9 N -0.676 5.676 10 C 0.551 3.449 11 O -0.572 6.572 12 C -0.541 4.541 13 H 0.067 0.933 14 C 0.090 3.910 15 N -0.749 5.749 16 Si 0.910 3.090 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.007 4.007 21 C -0.016 4.016 22 C -0.145 4.145 23 C -0.144 4.144 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.208 0.792 34 H 0.387 0.613 35 H 0.272 0.728 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.978 -15.097 6.312 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.176 4.176 4 C 0.023 3.977 5 N -0.167 5.167 6 N -0.125 5.125 7 C -0.139 4.139 8 C -0.043 4.043 9 N -0.323 5.323 10 C 0.360 3.640 11 O -0.456 6.456 12 C -0.577 4.577 13 H 0.085 0.915 14 C -0.133 4.133 15 N -0.377 5.377 16 Si 0.734 3.266 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.135 4.135 21 C -0.036 4.036 22 C -0.203 4.203 23 C -0.202 4.202 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.224 0.776 34 H 0.222 0.778 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.167 -15.642 4.286 17.731 hybrid contribution 0.400 1.176 1.715 2.118 sum -6.767 -14.466 6.001 17.060 Atomic orbital electron populations 1.21754 0.95612 1.01491 1.02052 1.21452 0.96187 0.96128 1.02104 1.22067 0.94859 0.97258 1.03436 1.21416 0.94030 0.79003 1.03248 1.47774 1.54591 1.11197 1.03160 1.77207 1.22592 1.04502 1.08243 1.24721 0.99320 0.95365 0.94534 1.17730 1.05995 0.89015 0.91563 1.43649 1.68816 1.12256 1.07558 1.16965 0.78074 0.80541 0.88470 1.90498 1.58846 1.81492 1.14787 1.19957 1.46239 0.97503 0.93999 0.91458 1.25715 0.93350 0.99288 0.94907 1.70000 1.31807 1.25374 1.10503 0.86391 0.79665 0.80146 0.80359 1.19140 1.20432 1.19139 1.20050 1.11114 0.92748 0.89568 1.19490 0.96588 0.99149 0.88364 1.21865 0.96016 1.03109 0.99347 1.21851 0.98726 1.00361 0.99301 0.92699 0.92640 0.92752 0.91759 0.91884 0.91448 0.91031 0.89553 0.89979 0.77561 0.77843 0.91728 0.91111 0.92343 0.91637 0.92713 0.91652 0.92738 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.14 -1.52 5.54 -26.73 -0.15 -1.66 16 4 C 0.15 1.81 6.10 -4.04 -0.02 1.79 16 5 N -0.38 -6.65 3.62 -56.87 -0.21 -6.86 16 6 N -0.30 -6.42 12.55 30.73 0.39 -6.04 16 7 C 0.05 1.13 10.84 -17.18 -0.19 0.94 16 8 C 0.06 1.41 6.52 -83.99 -0.55 0.86 16 9 N -0.68 -15.55 4.84 -12.61 -0.06 -15.61 16 10 C 0.55 15.38 7.54 -14.90 -0.11 15.27 16 11 O -0.57 -17.76 12.02 5.10 0.06 -17.70 16 12 C -0.54 -14.79 9.31 -37.51 -0.35 -15.14 16 13 H 0.07 1.67 7.85 -52.49 -0.41 1.25 16 14 C 0.09 2.43 5.50 -17.35 -0.10 2.33 16 15 N -0.75 -21.67 11.73 55.55 0.65 -21.02 16 16 Si 0.91 19.45 29.56 -169.99 -5.02 14.42 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 C -0.01 -0.13 5.69 -81.88 -0.47 -0.60 16 21 C -0.02 -0.21 3.01 -91.77 -0.28 -0.49 16 22 C -0.15 -1.88 9.03 37.16 0.34 -1.55 16 23 C -0.14 -1.87 9.03 37.15 0.34 -1.54 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.85 7.06 -51.93 -0.37 0.48 16 33 H 0.21 5.39 5.91 -52.49 -0.31 5.08 16 34 H 0.39 7.76 5.01 -40.82 -0.20 7.56 16 35 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 36 H 0.07 0.82 6.76 -51.93 -0.35 0.47 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.97 6.01 -51.93 -0.31 0.65 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.96 6.02 -51.93 -0.31 0.65 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -32.87 340.23 -6.87 -39.74 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.48 Total: 9.69 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.32 Total: -1.75 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.77 Total: -49.53 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.06 Total: -17.70 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.87 -6.87 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361281796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.742 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds