Wall clock time and date at job start Tue Mar 31 2020 02:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47117 * 2 1 4 4 C 1.53005 * 109.46782 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46972 * 179.97438 * 4 3 2 6 6 N 1.40040 * 125.97374 * 270.15380 * 5 4 3 7 7 C 1.30779 * 108.43098 * 180.28849 * 6 5 4 8 8 C 1.40412 * 108.20987 * 359.74878 * 7 6 5 9 9 N 1.40156 * 126.15197 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99829 * 0.02562 * 9 8 7 11 11 O 1.21794 * 119.99849 * 0.02562 * 10 9 8 12 12 C 1.41804 * 120.00191 * 180.02562 * 10 9 8 13 13 H 1.07994 * 120.00119 * 0.02562 * 12 10 9 14 14 C 1.40125 * 119.99971 * 179.97438 * 12 10 9 15 15 N 1.30634 * 120.00374 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00022 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.46932 * 60.00194 * 16 14 12 18 18 H 1.48500 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47034 * 300.00255 * 16 14 12 20 20 C 1.35170 * 125.97476 * 89.99794 * 5 4 3 21 21 C 1.50706 * 126.20136 * 359.97438 * 20 5 4 22 22 C 1.52997 * 109.47238 * 119.71282 * 21 20 5 23 23 C 1.52992 * 109.47161 * 239.71817 * 21 20 5 24 24 H 1.09006 * 109.46788 * 300.00350 * 1 2 3 25 25 H 1.08995 * 109.46826 * 59.99918 * 1 2 3 26 26 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46851 * 239.99242 * 2 1 3 28 28 H 1.09004 * 109.46601 * 119.99962 * 2 1 3 29 29 H 1.09000 * 109.47156 * 60.00046 * 3 2 1 30 30 H 1.09004 * 109.47354 * 299.99501 * 3 2 1 31 31 H 1.09000 * 109.47341 * 60.00033 * 4 3 2 32 32 H 1.09003 * 109.46849 * 299.99275 * 4 3 2 33 33 H 1.08002 * 125.89678 * 179.76484 * 7 6 5 34 34 H 0.96996 * 120.00307 * 180.02562 * 9 8 7 35 35 H 0.97004 * 120.00204 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.46456 * 359.71115 * 21 20 5 37 37 H 1.09002 * 109.47153 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.46832 * 60.00314 * 22 21 20 39 39 H 1.09004 * 109.47261 * 300.00295 * 22 21 20 40 40 H 1.09001 * 109.47066 * 299.99783 * 23 21 20 41 41 H 1.08996 * 109.47747 * 59.99449 * 23 21 20 42 42 H 1.09002 * 109.47103 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 7 4.3294 3.5999 -1.1349 7 6 4.7521 4.7732 -0.7413 8 6 4.7602 4.7883 0.6627 9 7 5.1484 5.8619 1.4758 10 6 5.5624 7.0159 0.9160 11 8 5.5988 7.1259 -0.2964 12 6 5.9557 8.1019 1.7386 13 1 5.9239 8.0043 2.8136 14 6 6.3867 9.3015 1.1565 15 7 6.4257 9.4195 -0.1439 16 14 6.9055 10.7320 2.2401 17 1 8.0472 10.3172 3.0942 18 1 7.3151 11.8762 1.3867 19 1 5.7660 11.1398 3.1006 20 6 4.3236 3.5726 1.0923 21 6 4.1699 3.1383 2.5272 22 6 5.5260 3.2150 3.2314 23 6 3.1748 4.0598 3.2351 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9331 0.9287 -0.8909 32 1 3.9337 0.9285 0.8892 33 1 5.0443 5.5897 -1.3850 34 1 5.1191 5.7744 2.4414 35 1 6.7237 10.2501 -0.5469 36 1 3.8014 2.1130 2.5589 37 1 5.4149 2.9004 4.2691 38 1 5.8944 4.2403 3.1996 39 1 6.2350 2.5584 2.7270 40 1 3.5431 5.0852 3.2034 41 1 2.2086 4.0053 2.7335 42 1 3.0632 3.7454 4.2729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361281796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:32 Heat of formation + Delta-G solvation = -6.569400 kcal Electronic energy + Delta-G solvation = -22250.456899 eV Core-core repulsion = 19037.534959 eV Total energy + Delta-G solvation = -3212.921940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.32676 -39.39917 -36.89039 -36.61240 -35.05082 -34.24230 -32.93885 -29.99842 -29.41901 -28.00963 -27.85756 -24.82838 -23.67323 -22.72976 -22.11092 -21.21462 -20.45587 -18.84473 -17.73806 -17.23744 -17.01990 -16.25011 -16.10171 -15.88400 -15.06322 -14.99853 -14.88892 -14.49896 -14.36125 -14.22174 -13.90632 -13.83199 -13.39005 -13.13768 -13.01885 -12.75981 -12.64988 -12.51584 -12.32550 -12.32298 -12.10407 -12.04731 -11.97229 -11.69809 -11.51652 -11.43710 -11.19570 -10.82560 -10.03694 -9.75106 -8.31747 -8.24847 -6.91207 0.92991 1.41389 1.43698 1.56641 1.68614 1.90908 2.25004 2.56351 3.13521 3.63370 3.72499 3.76506 3.86937 3.95878 4.10066 4.22578 4.25608 4.36877 4.41196 4.51483 4.66420 4.70754 4.76682 4.81249 4.84863 4.92850 4.98530 5.03751 5.09939 5.14677 5.23318 5.26349 5.32393 5.38557 5.42207 5.45742 5.62295 5.93969 6.18094 6.29666 6.54770 6.80333 6.84531 7.55960 8.48113 8.66766 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.028123 B = 0.004093 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.392396 B = 6838.880315 C = 7316.768561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.130 3.870 5 N -0.364 5.364 6 N -0.320 5.320 7 C 0.012 3.988 8 C 0.016 3.984 9 N -0.665 5.665 10 C 0.533 3.467 11 O -0.618 6.618 12 C -0.567 4.567 13 H 0.089 0.911 14 C 0.033 3.967 15 N -0.804 5.804 16 Si 1.000 3.000 17 H -0.253 1.253 18 H -0.275 1.275 19 H -0.253 1.253 20 C 0.032 3.968 21 C -0.016 4.016 22 C -0.143 4.143 23 C -0.142 4.142 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.169 0.831 34 H 0.401 0.599 35 H 0.277 0.723 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.040 0.960 41 H 0.049 0.951 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.635 -17.399 9.838 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.010 3.990 5 N -0.150 5.150 6 N -0.144 5.144 7 C -0.173 4.173 8 C -0.090 4.090 9 N -0.313 5.313 10 C 0.341 3.659 11 O -0.505 6.505 12 C -0.603 4.603 13 H 0.107 0.893 14 C -0.185 4.185 15 N -0.432 5.432 16 Si 0.818 3.182 17 H -0.177 1.177 18 H -0.199 1.199 19 H -0.177 1.177 20 C -0.099 4.099 21 C -0.036 4.036 22 C -0.201 4.201 23 C -0.200 4.200 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.138 0.862 33 H 0.185 0.815 34 H 0.238 0.762 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.852 -18.018 7.819 21.153 hybrid contribution 0.504 1.642 0.607 1.822 sum -7.348 -16.377 8.427 19.829 Atomic orbital electron populations 1.21771 0.95410 1.02328 1.01584 1.21426 0.96281 0.93935 1.03483 1.21988 0.93442 0.99226 1.02142 1.22023 0.95162 0.76186 1.05588 1.48369 1.52011 1.12450 1.02161 1.77118 1.23336 1.04129 1.09802 1.24197 1.01903 0.95727 0.95428 1.17936 1.09531 0.90615 0.90927 1.43130 1.68466 1.11500 1.08162 1.17390 0.78168 0.82132 0.88184 1.90481 1.60679 1.82752 1.16596 1.20486 1.46629 0.98079 0.95089 0.89322 1.26992 0.92527 1.02589 0.96399 1.70175 1.33161 1.26672 1.13220 0.85043 0.79766 0.75357 0.77989 1.17656 1.19924 1.17675 1.20788 1.06470 0.90827 0.91797 1.19790 0.97675 1.01197 0.84893 1.21868 0.95089 1.01700 1.01476 1.21852 0.97916 0.98845 1.01422 0.92664 0.93719 0.91264 0.91185 0.89683 0.91561 0.93634 0.88700 0.86196 0.81454 0.76224 0.91290 0.87358 0.88606 0.94079 0.92943 0.94077 0.93140 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.11 -1.46 5.93 30.60 0.18 -1.28 16 3 C -0.13 -2.53 5.54 30.59 0.17 -2.36 16 4 C 0.13 2.85 6.10 86.38 0.53 3.38 16 5 N -0.36 -12.39 3.62 -333.85 -1.21 -13.60 16 6 N -0.32 -14.10 12.55 -56.69 -0.71 -14.81 16 7 C 0.01 0.63 10.84 85.38 0.93 1.56 16 8 C 0.02 0.72 6.52 37.85 0.25 0.97 16 9 N -0.67 -31.91 4.84 -311.97 -1.51 -33.42 16 10 C 0.53 31.47 7.54 85.12 0.64 32.11 16 11 O -0.62 -41.41 12.02 -4.65 -0.06 -41.47 16 12 C -0.57 -31.93 9.31 23.61 0.22 -31.71 16 13 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 14 C 0.03 1.80 5.50 85.33 0.47 2.27 16 15 N -0.80 -48.76 11.73 21.85 0.26 -48.50 16 16 Si 1.00 40.13 29.56 68.60 2.03 42.15 16 17 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 19 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 20 C 0.03 1.10 5.69 41.56 0.24 1.34 16 21 C -0.02 -0.37 3.01 -11.54 -0.03 -0.40 16 22 C -0.14 -3.22 9.03 71.98 0.65 -2.57 16 23 C -0.14 -3.24 9.03 71.98 0.65 -2.59 16 24 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.13 8.14 -2.38 -0.02 1.12 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.12 1.82 7.06 -2.39 -0.02 1.80 16 33 H 0.17 9.81 5.91 -2.91 -0.02 9.80 16 34 H 0.40 16.40 5.01 -92.71 -0.46 15.94 16 35 H 0.28 15.21 8.29 -92.71 -0.77 14.44 16 36 H 0.11 1.83 6.76 -2.39 -0.02 1.82 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.14 6.01 -2.39 -0.01 1.12 16 39 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.04 1.14 6.02 -2.39 -0.01 1.13 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -78.98 340.23 4.95 -74.03 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 0.55 Total: 36.19 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 5.60 Total: -0.57 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -3.17 Total: -110.34 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -0.06 Total: -41.47 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.15 kcal Total: -78.98 4.95 -74.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361281796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.464 kcal (2) G-P(sol) polarization free energy of solvation -78.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds