Wall clock time and date at job start Tue Mar 31 2020 01:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 C 1.53004 * 109.46947 * 240.00383 * 2 1 3 5 5 C 1.50697 * 109.47236 * 59.99736 * 4 2 1 6 6 H 1.07997 * 120.00444 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99735 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99905 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47333 * 89.99949 * 9 7 5 11 11 H 1.48504 * 109.46828 * 209.99710 * 9 7 5 12 12 H 1.48498 * 109.47253 * 329.99320 * 9 7 5 13 13 C 1.52992 * 109.47284 * 120.00373 * 2 1 3 14 14 N 1.46905 * 109.46848 * 302.76463 * 13 2 1 15 15 C 1.48719 * 111.01341 * 84.38291 * 14 13 2 16 16 C 1.54385 * 104.51684 * 158.96195 * 15 14 13 17 17 C 1.54261 * 105.14836 * 336.27428 * 16 15 14 18 18 C 1.48562 * 110.99960 * 199.89250 * 14 13 2 19 19 H 1.08996 * 110.40955 * 319.73931 * 18 14 13 20 20 C 1.50700 * 110.41274 * 82.18391 * 18 14 13 21 21 N 1.34494 * 126.28807 * 221.63194 * 20 18 14 22 22 C 1.31126 * 105.61409 * 179.97438 * 21 20 18 23 23 O 1.33643 * 106.90136 * 359.97438 * 22 21 20 24 24 N 1.21300 * 109.80828 * 359.73964 * 23 22 21 25 25 H 1.09002 * 109.47209 * 311.92678 * 1 2 3 26 26 H 1.09006 * 109.47291 * 71.92629 * 1 2 3 27 27 H 1.08998 * 109.47178 * 191.92370 * 1 2 3 28 28 H 1.08994 * 109.47217 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.46993 * 300.00387 * 3 2 1 30 30 H 1.09000 * 109.47194 * 59.99856 * 3 2 1 31 31 H 1.08997 * 109.46812 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47098 * 299.99626 * 4 2 1 33 33 H 0.96997 * 119.99821 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47552 * 182.76909 * 13 2 1 35 35 H 1.08992 * 109.47288 * 62.76493 * 13 2 1 36 36 H 1.09002 * 110.38749 * 40.24463 * 15 14 13 37 37 H 1.08997 * 110.50868 * 277.75235 * 15 14 13 38 38 H 1.08999 * 110.32430 * 217.31808 * 16 15 14 39 39 H 1.09003 * 110.31778 * 95.21870 * 16 15 14 40 40 H 1.09003 * 110.32152 * 118.84730 * 17 16 15 41 41 H 1.09002 * 110.31970 * 241.04520 * 17 16 15 42 42 H 1.08003 * 126.55034 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3807 7 6 1.8711 -0.4815 -3.7320 8 7 1.4323 0.1382 -4.8058 9 14 2.9451 -2.0003 -3.9034 10 1 2.0865 -3.2111 -3.9494 11 1 3.7374 -1.9074 -5.1560 12 1 3.8652 -2.0896 -2.7413 13 6 2.0400 -0.7213 1.2491 14 7 1.4965 -0.0685 2.4477 15 6 0.1381 -0.5834 2.7658 16 6 -0.0618 -0.2506 4.2600 17 6 1.3625 -0.1301 4.8402 18 6 2.3054 -0.4016 3.6484 19 1 2.6008 -1.4505 3.6287 20 6 3.5204 0.4866 3.7267 21 7 4.7647 0.1051 4.0657 22 6 5.4966 1.1912 4.0017 23 8 4.6846 2.1855 3.6302 24 7 3.5595 1.7604 3.4727 25 1 -0.3634 0.6867 0.7646 26 1 -0.3634 0.3188 -0.9770 27 1 -0.3633 -1.0055 0.2123 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 -0.7208 -1.2495 32 1 1.6767 -1.7489 -1.2494 33 1 1.6672 -0.1927 -5.6868 34 1 3.1289 -0.6785 1.2743 35 1 1.7178 -1.7622 1.2246 36 1 0.0936 -1.6608 2.6071 37 1 -0.6136 -0.0776 2.1598 38 1 -0.6066 -1.0533 4.7571 39 1 -0.5963 0.6931 4.3695 40 1 1.5276 0.8732 5.2329 41 1 1.5168 -0.8737 5.6222 42 1 6.5538 1.2675 4.2089 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371378238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:38 Heat of formation + Delta-G solvation = 73.830821 kcal Electronic energy + Delta-G solvation = -22919.210455 eV Core-core repulsion = 19709.774931 eV Total energy + Delta-G solvation = -3209.435524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.59408 -39.48872 -36.52845 -35.56931 -32.54970 -32.40125 -31.09895 -29.30039 -27.52835 -26.40705 -25.57540 -24.16929 -23.70901 -22.29275 -20.85329 -20.58552 -18.12875 -17.88992 -17.86251 -16.76498 -16.01300 -15.88209 -15.23844 -14.33647 -14.12672 -14.09574 -13.60765 -13.06292 -12.67920 -12.61734 -12.50087 -12.30396 -12.23437 -12.09934 -11.67757 -11.50594 -11.30232 -11.11396 -10.91927 -10.79345 -10.75954 -10.53991 -10.35846 -10.31543 -10.01601 -9.75164 -9.63044 -9.21971 -8.91903 -8.48089 -8.32758 -5.98423 -3.94190 1.22852 2.21499 3.01604 3.32371 3.40111 3.44126 3.48294 4.01153 4.33550 4.49452 4.53186 4.71931 4.85592 5.07315 5.29117 5.34063 5.39115 5.47488 5.57768 5.64667 5.67316 5.71469 5.85055 5.91370 5.95156 5.99684 6.05195 6.15988 6.27468 6.49652 6.65773 6.72335 6.82903 6.92791 7.07722 7.17651 7.21741 7.31301 7.40153 7.51388 7.86983 8.23019 8.61924 9.07781 9.64729 11.14686 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.005225 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.933667 B = 5358.043674 C = 6078.572078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 C -0.114 4.114 4 C -0.004 4.004 5 C -0.505 4.505 6 H 0.079 0.921 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.268 1.268 13 C 0.053 3.947 14 N -0.489 5.489 15 C 0.026 3.974 16 C -0.123 4.123 17 C -0.110 4.110 18 C 0.147 3.853 19 H 0.079 0.921 20 C 0.181 3.819 21 N -0.488 5.488 22 C 0.147 3.853 23 O 0.078 5.922 24 N -0.344 5.344 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.012 0.988 32 H 0.007 0.993 33 H 0.261 0.739 34 H 0.059 0.941 35 H 0.038 0.962 36 H 0.046 0.954 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 -0.286 21.437 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.039 4.039 3 C -0.171 4.171 4 C -0.042 4.042 5 C -0.543 4.543 6 H 0.097 0.903 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.702 3.298 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.193 1.193 13 C -0.074 4.074 14 N -0.214 5.214 15 C -0.102 4.102 16 C -0.161 4.161 17 C -0.150 4.150 18 C 0.037 3.963 19 H 0.097 0.903 20 C -0.092 4.092 21 N -0.222 5.222 22 C -0.094 4.094 23 O 0.016 5.984 24 N -0.048 5.048 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 2.835 0.296 20.930 21.123 hybrid contribution 1.214 -1.809 -0.178 2.186 sum 4.049 -1.513 20.752 21.197 Atomic orbital electron populations 1.22029 0.95426 0.99424 1.02201 1.20302 0.95393 0.95921 0.92319 1.21584 0.98980 0.95651 1.00927 1.19633 0.95852 0.95282 0.93462 1.21125 1.31385 1.13173 0.88607 0.90330 1.25009 0.95795 0.96716 0.96030 1.69910 1.46145 1.40632 0.97798 0.86864 0.81344 0.84077 0.77471 1.20473 1.21519 1.19261 1.22559 0.98807 0.95685 0.90388 1.65237 1.01278 1.54182 1.00664 1.23554 0.92249 0.98557 0.95801 1.22328 0.96051 1.02254 0.95473 1.22285 0.94257 1.02488 0.95921 1.20768 0.87558 0.94602 0.93371 0.90335 1.25464 0.94023 0.89846 0.99890 1.71826 1.01892 1.28212 1.20239 1.30388 1.01240 0.81577 0.96171 1.85381 1.14003 1.37764 1.61205 1.74738 0.98471 1.13768 1.17809 0.93455 0.91094 0.94530 0.95051 0.92136 0.93323 0.97020 0.97423 0.92909 0.92225 0.94423 0.93579 0.87929 0.91212 0.90752 0.90966 0.90827 0.72532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 6.78 37.16 0.25 -2.28 16 2 C -0.04 -0.78 0.60 -154.51 -0.09 -0.88 16 3 C -0.11 -2.36 8.06 37.16 0.30 -2.06 16 4 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 5 C -0.50 -14.20 8.04 -34.44 -0.28 -14.47 16 6 H 0.08 2.36 6.00 -52.49 -0.31 2.04 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.05 13.96 55.43 0.77 -27.27 16 9 Si 0.87 22.13 27.47 -169.99 -4.67 17.46 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 13 C 0.05 0.93 3.98 -3.83 -0.02 0.92 16 14 N -0.49 -7.33 4.16 -223.37 -0.93 -8.26 16 15 C 0.03 0.32 5.13 -2.09 -0.01 0.31 16 16 C -0.12 -1.25 6.99 -25.35 -0.18 -1.43 16 17 C -0.11 -1.19 6.54 -25.35 -0.17 -1.36 16 18 C 0.15 1.97 2.77 -67.22 -0.19 1.79 16 19 H 0.08 1.04 8.00 -51.93 -0.42 0.62 16 20 C 0.18 2.58 6.58 -156.37 -1.03 1.55 16 21 N -0.49 -6.25 11.55 -13.72 -0.16 -6.40 16 22 C 0.15 1.35 13.40 51.98 0.70 2.05 16 23 O 0.08 0.94 11.31 18.10 0.20 1.14 16 24 N -0.34 -5.12 12.15 30.88 0.38 -4.75 16 25 H 0.05 0.80 5.91 -51.93 -0.31 0.50 16 26 H 0.07 1.54 6.32 -51.93 -0.33 1.21 16 27 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.37 6.62 -51.92 -0.34 1.03 16 30 H 0.05 0.95 7.68 -51.93 -0.40 0.55 16 31 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 32 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.06 1.10 7.63 -51.93 -0.40 0.71 16 35 H 0.04 0.64 7.56 -51.93 -0.39 0.24 16 36 H 0.05 0.57 7.63 -51.93 -0.40 0.17 16 37 H 0.10 1.35 5.16 -51.93 -0.27 1.09 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.26 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -33.15 326.51 -6.79 -39.94 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.41 Total: -2.51 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.89 Total: -14.26 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.06 Total: -46.69 kcal Atomic # 8 Polarization: 0.94 SS G_CDS: 0.20 Total: 1.14 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.15 -6.79 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371378238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.771 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds