Wall clock time and date at job start Tue Mar 31 2020 01:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 C 1.53004 * 109.46947 * 240.00383 * 2 1 3 5 5 C 1.50697 * 109.47236 * 59.99736 * 4 2 1 6 6 H 1.07997 * 120.00444 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99735 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99905 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47333 * 89.99949 * 9 7 5 11 11 H 1.48504 * 109.46828 * 209.99710 * 9 7 5 12 12 H 1.48498 * 109.47253 * 329.99320 * 9 7 5 13 13 C 1.52992 * 109.47284 * 120.00373 * 2 1 3 14 14 N 1.46905 * 109.46848 * 302.76463 * 13 2 1 15 15 C 1.48719 * 111.01341 * 84.38291 * 14 13 2 16 16 C 1.54385 * 104.51684 * 158.96195 * 15 14 13 17 17 C 1.54261 * 105.14836 * 336.27428 * 16 15 14 18 18 C 1.48562 * 110.99960 * 199.89250 * 14 13 2 19 19 H 1.08996 * 110.40955 * 319.73931 * 18 14 13 20 20 C 1.50700 * 110.41274 * 82.18391 * 18 14 13 21 21 N 1.34494 * 126.28807 * 221.63194 * 20 18 14 22 22 C 1.31126 * 105.61409 * 179.97438 * 21 20 18 23 23 O 1.33643 * 106.90136 * 359.97438 * 22 21 20 24 24 N 1.21300 * 109.80828 * 359.73964 * 23 22 21 25 25 H 1.09002 * 109.47209 * 311.92678 * 1 2 3 26 26 H 1.09006 * 109.47291 * 71.92629 * 1 2 3 27 27 H 1.08998 * 109.47178 * 191.92370 * 1 2 3 28 28 H 1.08994 * 109.47217 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.46993 * 300.00387 * 3 2 1 30 30 H 1.09000 * 109.47194 * 59.99856 * 3 2 1 31 31 H 1.08997 * 109.46812 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47098 * 299.99626 * 4 2 1 33 33 H 0.96997 * 119.99821 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47552 * 182.76909 * 13 2 1 35 35 H 1.08992 * 109.47288 * 62.76493 * 13 2 1 36 36 H 1.09002 * 110.38749 * 40.24463 * 15 14 13 37 37 H 1.08997 * 110.50868 * 277.75235 * 15 14 13 38 38 H 1.08999 * 110.32430 * 217.31808 * 16 15 14 39 39 H 1.09003 * 110.31778 * 95.21870 * 16 15 14 40 40 H 1.09003 * 110.32152 * 118.84730 * 17 16 15 41 41 H 1.09002 * 110.31970 * 241.04520 * 17 16 15 42 42 H 1.08003 * 126.55034 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3807 7 6 1.8711 -0.4815 -3.7320 8 7 1.4323 0.1382 -4.8058 9 14 2.9451 -2.0003 -3.9034 10 1 2.0865 -3.2111 -3.9494 11 1 3.7374 -1.9074 -5.1560 12 1 3.8652 -2.0896 -2.7413 13 6 2.0400 -0.7213 1.2491 14 7 1.4965 -0.0685 2.4477 15 6 0.1381 -0.5834 2.7658 16 6 -0.0618 -0.2506 4.2600 17 6 1.3625 -0.1301 4.8402 18 6 2.3054 -0.4016 3.6484 19 1 2.6008 -1.4505 3.6287 20 6 3.5204 0.4866 3.7267 21 7 4.7647 0.1051 4.0657 22 6 5.4966 1.1912 4.0017 23 8 4.6846 2.1855 3.6302 24 7 3.5595 1.7604 3.4727 25 1 -0.3634 0.6867 0.7646 26 1 -0.3634 0.3188 -0.9770 27 1 -0.3633 -1.0055 0.2123 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 -0.7208 -1.2495 32 1 1.6767 -1.7489 -1.2494 33 1 1.6672 -0.1927 -5.6868 34 1 3.1289 -0.6785 1.2743 35 1 1.7178 -1.7622 1.2246 36 1 0.0936 -1.6608 2.6071 37 1 -0.6136 -0.0776 2.1598 38 1 -0.6066 -1.0533 4.7571 39 1 -0.5963 0.6931 4.3695 40 1 1.5276 0.8732 5.2329 41 1 1.5168 -0.8737 5.6222 42 1 6.5538 1.2675 4.2089 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371378238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:37 Heat of formation + Delta-G solvation = 49.728428 kcal Electronic energy + Delta-G solvation = -22920.255614 eV Core-core repulsion = 19709.774931 eV Total energy + Delta-G solvation = -3210.480683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.52124 -40.63892 -38.01693 -36.53839 -34.57727 -33.36027 -32.41172 -30.36482 -29.44462 -27.96037 -27.01791 -25.09110 -24.75330 -24.09096 -21.82952 -21.56298 -19.60299 -19.00157 -18.92186 -18.77677 -17.07118 -16.89679 -16.31083 -16.04958 -15.66824 -15.50075 -14.89969 -14.54671 -14.26783 -14.08417 -13.93000 -13.55301 -13.30978 -13.26019 -12.98657 -12.89864 -12.74505 -12.41793 -12.32696 -12.23741 -12.04751 -12.03925 -11.92351 -11.74383 -11.42553 -11.35277 -11.04503 -10.94660 -10.81214 -10.72731 -9.48235 -8.24440 -6.24809 0.41011 1.29865 1.31898 1.34070 1.45063 2.28945 2.36359 2.61498 3.00228 3.09910 3.45189 3.60531 3.75421 3.94589 4.06044 4.15889 4.27905 4.30930 4.40939 4.56199 4.59375 4.64614 4.72272 4.81713 4.85676 4.88725 4.96265 4.99600 5.02974 5.09187 5.12946 5.19648 5.25979 5.32619 5.38237 5.48475 5.56406 5.67998 5.77107 5.88483 5.99486 6.38488 6.81526 7.36174 7.37241 8.91792 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.005225 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.933667 B = 5358.043674 C = 6078.572078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.039 4.039 3 C -0.098 4.098 4 C -0.001 4.001 5 C -0.503 4.503 6 H 0.044 0.956 7 C 0.003 3.997 8 N -0.952 5.952 9 Si 0.940 3.060 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.255 1.255 13 C 0.069 3.931 14 N -0.502 5.502 15 C 0.021 3.979 16 C -0.114 4.114 17 C -0.103 4.103 18 C 0.145 3.855 19 H 0.080 0.920 20 C 0.168 3.832 21 N -0.519 5.519 22 C 0.173 3.827 23 O 0.071 5.929 24 N -0.379 5.379 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.021 0.979 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.005 0.995 32 H 0.014 0.986 33 H 0.263 0.737 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.565 -1.855 23.918 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.039 4.039 3 C -0.156 4.156 4 C -0.039 4.039 5 C -0.542 4.542 6 H 0.063 0.937 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.764 3.236 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.179 1.179 13 C -0.060 4.060 14 N -0.227 5.227 15 C -0.106 4.106 16 C -0.152 4.152 17 C -0.142 4.142 18 C 0.034 3.966 19 H 0.098 0.902 20 C -0.105 4.105 21 N -0.252 5.252 22 C -0.067 4.067 23 O 0.011 5.989 24 N -0.085 5.085 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.023 0.977 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.329 0.671 Dipole moment (debyes) X Y Z Total from point charges 3.771 -1.273 23.440 23.776 hybrid contribution 0.963 -1.217 -0.908 1.797 sum 4.733 -2.490 22.532 23.159 Atomic orbital electron populations 1.21915 0.94447 1.00826 1.00778 1.20228 0.96156 0.95191 0.92334 1.21410 0.98177 0.96146 0.99825 1.19570 0.95224 0.95475 0.93597 1.21370 1.30249 1.12156 0.90380 0.93740 1.25898 0.97484 1.00181 0.95708 1.70059 1.48116 1.42770 0.98437 0.85813 0.79724 0.80201 0.77813 1.19193 1.21195 1.17920 1.22215 0.97873 0.95686 0.90201 1.65134 1.02609 1.54369 1.00558 1.23614 0.90643 0.98860 0.97494 1.22304 0.95907 1.03293 0.93676 1.22272 0.93866 1.02645 0.95415 1.20879 0.87768 0.94571 0.93345 0.90177 1.25696 0.94841 0.89913 1.00037 1.71825 1.01802 1.29692 1.21886 1.31579 1.02545 0.79849 0.92703 1.85327 1.13745 1.38340 1.61486 1.74723 0.99989 1.14365 1.19412 0.91449 0.94667 0.92869 0.95939 0.95149 0.92227 0.97710 0.96778 0.92803 0.93575 0.93599 0.92788 0.88696 0.88649 0.90645 0.91874 0.88670 0.67074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 6.78 71.98 0.49 -4.14 16 2 C -0.04 -1.55 0.60 -52.18 -0.03 -1.58 16 3 C -0.10 -4.15 8.06 71.98 0.58 -3.57 16 4 C 0.00 -0.04 3.11 29.85 0.09 0.05 16 5 C -0.50 -29.10 8.04 25.60 0.21 -28.89 16 6 H 0.04 2.82 6.00 -2.91 -0.02 2.80 16 7 C 0.00 0.19 5.47 84.66 0.46 0.66 16 8 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 9 Si 0.94 45.63 27.47 68.60 1.88 47.51 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.26 -11.77 6.54 99.48 0.65 -11.12 16 13 C 0.07 2.31 3.98 86.30 0.34 2.65 16 14 N -0.50 -14.28 4.16 -860.60 -3.58 -17.86 16 15 C 0.02 0.48 5.13 86.42 0.44 0.92 16 16 C -0.11 -1.98 6.99 31.49 0.22 -1.76 16 17 C -0.10 -1.97 6.54 31.49 0.21 -1.76 16 18 C 0.14 3.61 2.77 44.31 0.12 3.73 16 19 H 0.08 1.95 8.00 -2.39 -0.02 1.94 16 20 C 0.17 4.57 6.58 138.46 0.91 5.48 16 21 N -0.52 -12.29 11.55 -315.38 -3.64 -15.93 16 22 C 0.17 2.72 13.40 130.52 1.75 4.47 16 23 O 0.07 1.61 11.31 74.84 0.85 2.45 16 24 N -0.38 -10.96 12.15 -60.39 -0.73 -11.70 16 25 H 0.07 2.25 5.91 -2.39 -0.01 2.24 16 26 H 0.03 1.56 6.32 -2.38 -0.02 1.54 16 27 H 0.05 1.79 7.65 -2.39 -0.02 1.78 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.03 1.42 6.62 -2.38 -0.02 1.41 16 30 H 0.06 2.36 7.68 -2.39 -0.02 2.34 16 31 H 0.00 0.23 7.20 -2.39 -0.02 0.21 16 32 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 33 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.05 1.66 7.63 -2.39 -0.02 1.65 16 35 H 0.05 1.46 7.56 -2.39 -0.02 1.44 16 36 H 0.05 1.17 7.63 -2.39 -0.02 1.15 16 37 H 0.10 2.31 5.16 -2.39 -0.01 2.29 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.33 7.85 -2.39 -0.02 1.32 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.31 0.49 8.06 -2.91 -0.02 0.47 16 Total: -1.00 -74.25 326.51 1.82 -72.43 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 0.95 Total: 7.20 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 5.79 Total: -23.75 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -7.66 Total: -105.85 kcal Atomic # 8 Polarization: 1.61 SS G_CDS: 0.85 Total: 2.45 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -74.25 1.82 -72.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371378238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.158 kcal (2) G-P(sol) polarization free energy of solvation -74.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds