Wall clock time and date at job start Tue Mar 31 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 C 1.50700 * 109.47375 * 240.00338 * 2 1 3 5 5 H 1.08004 * 120.00091 * 241.34633 * 4 2 1 6 6 C 1.37881 * 120.00281 * 61.34177 * 4 2 1 7 7 N 1.31510 * 120.00129 * 193.98161 * 6 4 2 8 8 Si 1.86800 * 119.99533 * 13.97770 * 6 4 2 9 9 H 1.48504 * 109.47107 * 84.54901 * 8 6 4 10 10 H 1.48498 * 109.46999 * 204.54642 * 8 6 4 11 11 H 1.48499 * 109.47607 * 324.55105 * 8 6 4 12 12 C 1.52999 * 109.47222 * 120.00211 * 2 1 3 13 13 N 1.46499 * 109.47006 * 300.00023 * 12 2 1 14 14 C 1.34781 * 120.00021 * 180.02562 * 13 12 2 15 15 O 1.21582 * 119.99598 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99815 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99886 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47192 * 179.97438 * 17 16 14 19 19 N 1.46500 * 109.47192 * 180.02562 * 18 17 16 20 20 C 1.36342 * 125.63429 * 90.00114 * 19 18 17 21 21 C 1.34845 * 108.21701 * 179.97438 * 20 19 18 22 22 C 1.40887 * 107.41880 * 0.02562 * 21 20 19 23 23 C 1.34847 * 107.42064 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.47550 * 309.36255 * 1 2 3 25 25 H 1.08995 * 109.47427 * 69.36889 * 1 2 3 26 26 H 1.09007 * 109.46816 * 189.36711 * 1 2 3 27 27 H 1.08997 * 109.47646 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46754 * 300.00522 * 3 2 1 29 29 H 1.09003 * 109.47065 * 59.99723 * 3 2 1 30 30 H 0.97003 * 119.99980 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46823 * 180.02562 * 12 2 1 32 32 H 1.08992 * 109.47473 * 59.99952 * 12 2 1 33 33 H 0.97000 * 119.99954 * 359.97438 * 13 12 2 34 34 H 0.97003 * 119.99947 * 359.97438 * 16 14 13 35 35 H 1.09005 * 109.46997 * 59.99957 * 17 16 14 36 36 H 1.08999 * 109.47264 * 299.99825 * 17 16 14 37 37 H 1.09005 * 109.46976 * 60.00199 * 18 17 16 38 38 H 1.08999 * 109.47081 * 300.00192 * 18 17 16 39 39 H 1.08001 * 125.89380 * 359.71024 * 20 19 18 40 40 H 1.08007 * 126.29096 * 179.97438 * 21 20 19 41 41 H 1.08005 * 126.29100 * 180.02562 * 22 21 20 42 42 H 1.08001 * 125.89558 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6352 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4826 7 7 1.9157 -0.9725 -3.5460 8 14 1.0274 1.5007 -2.6684 9 1 2.1415 2.4818 -2.7083 10 1 0.2469 1.5865 -3.9287 11 1 0.1416 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5767 -1.4794 3.7810 16 7 1.4280 0.1441 4.7699 17 6 1.7819 -0.3564 6.1005 18 6 1.1487 0.5391 7.1673 19 7 1.5031 0.0389 8.4979 20 6 2.5998 0.4078 9.2190 21 6 2.5813 -0.2642 10.3880 22 6 1.4314 -1.0782 10.3883 23 6 0.7912 -0.8731 9.2193 24 1 -0.3634 0.6517 0.7945 25 1 -0.3634 0.3621 -0.9617 26 1 -0.3633 -1.0140 0.1673 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6973 -0.6300 -4.4269 31 1 3.1300 -0.7208 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.9943 0.7582 2.3564 34 1 0.8700 0.9326 4.6809 35 1 2.8658 -0.3473 6.2157 36 1 1.4128 -1.3756 6.2154 37 1 0.0648 0.5304 7.0523 38 1 1.5181 1.5581 7.0523 39 1 3.3556 1.1130 8.9061 40 1 3.3139 -0.1923 11.1783 41 1 1.1198 -1.7441 11.1795 42 1 -0.1277 -1.3480 8.9088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458540400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:52 Heat of formation + Delta-G solvation = 36.257288 kcal Electronic energy + Delta-G solvation = -21300.083304 eV Core-core repulsion = 18089.018469 eV Total energy + Delta-G solvation = -3211.064835 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36349 -39.79311 -37.03787 -35.51187 -33.43581 -32.69453 -31.45019 -28.99849 -28.42036 -26.43614 -25.80934 -24.85942 -23.29028 -20.91672 -20.70111 -20.17325 -19.24749 -18.39553 -17.38522 -16.22782 -16.07848 -15.83284 -15.32717 -14.73206 -14.69797 -14.01157 -13.86661 -13.83173 -13.37299 -13.25448 -12.94492 -12.65019 -12.55678 -12.32243 -12.24659 -12.20545 -12.08276 -11.87741 -11.31278 -10.46325 -10.35030 -10.20564 -10.10169 -9.97005 -9.23817 -9.16701 -8.88031 -8.72093 -8.52731 -8.42643 -8.37827 -6.17151 -4.14543 2.00133 2.41614 2.85933 3.13039 3.20928 3.27719 3.35967 3.43993 4.25558 4.32649 4.35628 4.50703 4.77670 4.81329 5.00453 5.13347 5.24716 5.41784 5.48133 5.56911 5.72601 6.00619 6.04182 6.07595 6.09503 6.30494 6.33500 6.39658 6.49687 6.58047 6.66877 6.76699 6.77290 6.92589 6.99324 7.07579 7.12254 7.19939 7.40006 7.69814 8.21225 8.43616 8.82216 8.88898 9.46447 10.95939 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.050126 B = 0.002753 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.453822 B =10166.788666 C =10339.648529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.029 3.971 3 C -0.147 4.147 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.250 1.250 12 C 0.160 3.840 13 N -0.736 5.736 14 C 0.700 3.300 15 O -0.591 6.591 16 N -0.754 5.754 17 C 0.127 3.873 18 C 0.096 3.904 19 N -0.446 5.446 20 C -0.014 4.014 21 C -0.202 4.202 22 C -0.202 4.202 23 C -0.014 4.014 24 H 0.021 0.979 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.028 0.972 30 H 0.265 0.735 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.392 0.608 34 H 0.394 0.606 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.161 0.839 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 6.877 22.819 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.037 3.963 13 N -0.391 5.391 14 C 0.400 3.600 15 O -0.469 6.469 16 N -0.412 5.412 17 C 0.001 3.999 18 C -0.027 4.027 19 N -0.122 5.122 20 C -0.143 4.143 21 C -0.227 4.227 22 C -0.227 4.227 23 C -0.143 4.143 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.226 0.774 34 H 0.228 0.772 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.178 0.822 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.660 6.024 22.343 23.428 hybrid contribution -0.812 1.704 -0.397 1.929 sum -4.472 7.728 21.945 23.692 Atomic orbital electron populations 1.22290 0.97866 0.99831 0.99880 1.18729 0.92503 0.92264 0.93758 1.22356 1.01229 0.98319 0.98467 1.20713 1.34097 1.12363 0.87940 0.90486 1.24978 0.94695 0.97306 0.95790 1.69949 1.48110 1.35902 0.98734 0.87285 0.79301 0.85562 0.75959 1.21375 1.23409 1.17577 1.21404 0.98415 0.95484 0.80997 1.45497 1.55807 1.33076 1.04691 1.15965 0.80553 0.82973 0.80517 1.90927 1.42659 1.27436 1.85912 1.44907 1.57974 1.33657 1.04642 1.21375 1.00659 0.97760 0.80082 1.21941 1.01828 0.98640 0.80270 1.43932 1.20329 1.34131 1.13848 1.21876 0.92976 1.05517 0.93978 1.20918 1.00832 1.02361 0.98581 1.20919 0.98166 1.05056 0.98553 1.21879 1.00369 0.98100 0.93985 0.96045 0.92541 0.93380 0.92766 0.94071 0.95272 0.92534 0.92124 0.92011 0.77362 0.77239 0.91043 0.91022 0.88624 0.88636 0.82202 0.84779 0.84779 0.82192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.53 37.16 0.28 -2.52 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.54 16 3 C -0.15 -2.90 7.52 37.16 0.28 -2.62 16 4 C -0.51 -13.65 8.62 -34.44 -0.30 -13.94 16 5 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 6 C 0.07 2.07 5.32 -17.82 -0.09 1.97 16 7 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 8 Si 0.89 20.80 22.79 -169.99 -3.87 16.92 16 9 H -0.29 -6.70 7.10 56.52 0.40 -6.30 16 10 H -0.31 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.25 -5.28 4.65 56.52 0.26 -5.02 16 12 C 0.16 3.17 4.49 -4.04 -0.02 3.15 16 13 N -0.74 -11.65 5.01 -65.23 -0.33 -11.98 16 14 C 0.70 11.25 8.57 -86.91 -0.74 10.51 16 15 O -0.59 -12.27 16.34 5.29 0.09 -12.18 16 16 N -0.75 -8.11 5.56 -65.22 -0.36 -8.47 16 17 C 0.13 1.26 6.00 -4.04 -0.02 1.23 16 18 C 0.10 0.63 6.20 -4.04 -0.03 0.61 16 19 N -0.45 -3.87 2.75 -117.13 -0.32 -4.19 16 20 C -0.01 -0.13 11.43 -16.75 -0.19 -0.32 16 21 C -0.20 -1.92 10.86 -39.78 -0.43 -2.36 16 22 C -0.20 -1.93 10.86 -39.78 -0.43 -2.36 16 23 C -0.01 -0.13 11.43 -16.75 -0.19 -0.32 16 24 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 25 H 0.06 1.20 4.30 -51.93 -0.22 0.97 16 26 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.86 2.25 -51.93 -0.12 0.75 16 29 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.39 5.20 6.27 -40.82 -0.26 4.94 16 34 H 0.39 2.89 8.49 -40.82 -0.35 2.55 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -33.16 333.54 -7.40 -40.56 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.43 Total: 6.41 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.97 Total: -6.43 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.24 Total: -50.31 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -3.87 Total: 16.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.16 -7.40 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458540400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.820 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds