Wall clock time and date at job start Tue Mar 31 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 C 1.50700 * 109.47375 * 240.00338 * 2 1 3 5 5 H 1.08004 * 120.00091 * 241.34633 * 4 2 1 6 6 C 1.37881 * 120.00281 * 61.34177 * 4 2 1 7 7 N 1.31510 * 120.00129 * 193.98161 * 6 4 2 8 8 Si 1.86800 * 119.99533 * 13.97770 * 6 4 2 9 9 H 1.48504 * 109.47107 * 84.54901 * 8 6 4 10 10 H 1.48498 * 109.46999 * 204.54642 * 8 6 4 11 11 H 1.48499 * 109.47607 * 324.55105 * 8 6 4 12 12 C 1.52999 * 109.47222 * 120.00211 * 2 1 3 13 13 N 1.46499 * 109.47006 * 300.00023 * 12 2 1 14 14 C 1.34781 * 120.00021 * 180.02562 * 13 12 2 15 15 O 1.21582 * 119.99598 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99815 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99886 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47192 * 179.97438 * 17 16 14 19 19 N 1.46500 * 109.47192 * 180.02562 * 18 17 16 20 20 C 1.36342 * 125.63429 * 90.00114 * 19 18 17 21 21 C 1.34845 * 108.21701 * 179.97438 * 20 19 18 22 22 C 1.40887 * 107.41880 * 0.02562 * 21 20 19 23 23 C 1.34847 * 107.42064 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.47550 * 309.36255 * 1 2 3 25 25 H 1.08995 * 109.47427 * 69.36889 * 1 2 3 26 26 H 1.09007 * 109.46816 * 189.36711 * 1 2 3 27 27 H 1.08997 * 109.47646 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46754 * 300.00522 * 3 2 1 29 29 H 1.09003 * 109.47065 * 59.99723 * 3 2 1 30 30 H 0.97003 * 119.99980 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46823 * 180.02562 * 12 2 1 32 32 H 1.08992 * 109.47473 * 59.99952 * 12 2 1 33 33 H 0.97000 * 119.99954 * 359.97438 * 13 12 2 34 34 H 0.97003 * 119.99947 * 359.97438 * 16 14 13 35 35 H 1.09005 * 109.46997 * 59.99957 * 17 16 14 36 36 H 1.08999 * 109.47264 * 299.99825 * 17 16 14 37 37 H 1.09005 * 109.46976 * 60.00199 * 18 17 16 38 38 H 1.08999 * 109.47081 * 300.00192 * 18 17 16 39 39 H 1.08001 * 125.89380 * 359.71024 * 20 19 18 40 40 H 1.08007 * 126.29096 * 179.97438 * 21 20 19 41 41 H 1.08005 * 126.29100 * 180.02562 * 22 21 20 42 42 H 1.08001 * 125.89558 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6352 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4826 7 7 1.9157 -0.9725 -3.5460 8 14 1.0274 1.5007 -2.6684 9 1 2.1415 2.4818 -2.7083 10 1 0.2469 1.5865 -3.9287 11 1 0.1416 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5767 -1.4794 3.7810 16 7 1.4280 0.1441 4.7699 17 6 1.7819 -0.3564 6.1005 18 6 1.1487 0.5391 7.1673 19 7 1.5031 0.0389 8.4979 20 6 2.5998 0.4078 9.2190 21 6 2.5813 -0.2642 10.3880 22 6 1.4314 -1.0782 10.3883 23 6 0.7912 -0.8731 9.2193 24 1 -0.3634 0.6517 0.7945 25 1 -0.3634 0.3621 -0.9617 26 1 -0.3633 -1.0140 0.1673 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6973 -0.6300 -4.4269 31 1 3.1300 -0.7208 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.9943 0.7582 2.3564 34 1 0.8700 0.9326 4.6809 35 1 2.8658 -0.3473 6.2157 36 1 1.4128 -1.3756 6.2154 37 1 0.0648 0.5304 7.0523 38 1 1.5181 1.5581 7.0523 39 1 3.3556 1.1130 8.9061 40 1 3.3139 -0.1923 11.1783 41 1 1.1198 -1.7441 11.1795 42 1 -0.1277 -1.3480 8.9088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458540400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:52 Heat of formation + Delta-G solvation = 12.204503 kcal Electronic energy + Delta-G solvation = -21301.126311 eV Core-core repulsion = 18089.018469 eV Total energy + Delta-G solvation = -3212.107842 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.00253 -41.08449 -38.60521 -36.53283 -35.02713 -33.80183 -33.11801 -29.63432 -29.31387 -28.00309 -27.34495 -26.72193 -24.12836 -22.14582 -21.34993 -20.93557 -20.86330 -19.62369 -18.15867 -17.98944 -17.29557 -17.08822 -16.87720 -15.80401 -15.73704 -15.42447 -14.97203 -14.78989 -14.73806 -14.38514 -14.33869 -14.08111 -13.95258 -13.73867 -13.25523 -12.99152 -12.95142 -12.87128 -12.45215 -12.38348 -12.13818 -11.94267 -11.75180 -11.43975 -11.04558 -10.61289 -10.42459 -10.37951 -9.75716 -9.54604 -9.03902 -8.29300 -6.31294 1.28932 1.37237 1.39029 1.52357 1.59494 2.15042 2.17553 2.26107 2.35800 3.06750 3.41061 3.70917 3.75309 4.08566 4.23042 4.28779 4.34688 4.42179 4.42828 4.48825 4.72775 4.77768 4.81972 4.82311 4.85801 4.87879 4.96211 5.07979 5.19562 5.36372 5.42537 5.44754 5.45095 5.56599 5.73459 5.81542 6.01902 6.10585 6.31881 6.33798 6.51840 6.73298 7.13700 7.33459 7.59376 8.88026 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.050126 B = 0.002753 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.453822 B =10166.788666 C =10339.648529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.519 4.519 5 H 0.025 0.975 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.317 1.317 11 H -0.200 1.200 12 C 0.177 3.823 13 N -0.722 5.722 14 C 0.698 3.302 15 O -0.643 6.643 16 N -0.726 5.726 17 C 0.131 3.869 18 C 0.105 3.895 19 N -0.450 5.450 20 C -0.023 4.023 21 C -0.225 4.225 22 C -0.225 4.225 23 C -0.023 4.023 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.264 0.736 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.410 0.590 34 H 0.417 0.583 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.180 0.820 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 10.269 24.892 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.557 4.557 5 H 0.044 0.956 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.209 1.209 10 H -0.247 1.247 11 H -0.124 1.124 12 C 0.052 3.948 13 N -0.378 5.378 14 C 0.398 3.602 15 O -0.525 6.525 16 N -0.385 5.385 17 C 0.005 3.995 18 C -0.017 4.017 19 N -0.126 5.126 20 C -0.152 4.152 21 C -0.249 4.249 22 C -0.249 4.249 23 C -0.152 4.152 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.248 0.752 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.197 0.803 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.753 9.480 24.486 26.880 hybrid contribution -0.091 0.497 -0.965 1.089 sum -5.843 9.978 23.522 26.210 Atomic orbital electron populations 1.22212 0.95899 1.00656 1.00979 1.18653 0.93899 0.93172 0.91547 1.22288 1.00948 0.96675 1.00387 1.21046 1.32915 1.11084 0.90670 0.95621 1.25909 0.95439 1.01814 0.95171 1.70121 1.50741 1.38393 0.99436 0.86302 0.79402 0.79643 0.77022 1.20946 1.24662 1.12352 1.20876 0.97006 0.94580 0.82362 1.45052 1.55972 1.33326 1.03494 1.16128 0.80144 0.82557 0.81393 1.90907 1.44978 1.29937 1.86682 1.44573 1.56924 1.33540 1.03450 1.21364 0.99855 0.97865 0.80395 1.21999 1.03047 0.98600 0.78017 1.44093 1.20153 1.34008 1.14350 1.22262 0.93397 1.05643 0.93911 1.21214 1.01337 1.02936 0.99458 1.21214 0.98643 1.05666 0.99425 1.22263 1.00993 0.98042 0.93926 0.91213 0.93652 0.94205 0.93619 0.94703 0.90439 0.92699 0.94343 0.94545 0.75196 0.74511 0.92887 0.92912 0.86162 0.86145 0.80324 0.84071 0.84076 0.80337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 7.53 71.98 0.54 -4.52 16 2 C 0.03 1.17 0.50 -52.93 -0.03 1.15 16 3 C -0.15 -5.20 7.52 71.98 0.54 -4.66 16 4 C -0.52 -28.41 8.62 25.60 0.22 -28.19 16 5 H 0.03 1.61 7.99 -2.91 -0.02 1.58 16 6 C 0.01 0.78 5.32 84.66 0.45 1.23 16 7 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 8 Si 0.95 41.84 22.79 68.60 1.56 43.40 16 9 H -0.28 -12.23 7.10 99.48 0.71 -11.52 16 10 H -0.32 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.20 -7.27 4.65 99.48 0.46 -6.81 16 12 C 0.18 6.93 4.49 86.38 0.39 7.32 16 13 N -0.72 -20.72 5.01 -478.55 -2.40 -23.12 16 14 C 0.70 20.97 8.57 179.05 1.53 22.50 16 15 O -0.64 -26.64 16.34 -3.97 -0.06 -26.71 16 16 N -0.73 -13.06 5.56 -478.53 -2.66 -15.72 16 17 C 0.13 2.27 6.00 86.38 0.52 2.79 16 18 C 0.11 0.98 6.20 86.38 0.54 1.52 16 19 N -0.45 -6.68 2.75 -524.48 -1.44 -8.12 16 20 C -0.02 -0.37 11.43 83.21 0.95 0.58 16 21 C -0.22 -4.08 10.86 22.14 0.24 -3.84 16 22 C -0.23 -4.08 10.86 22.14 0.24 -3.84 16 23 C -0.02 -0.37 11.43 83.21 0.95 0.58 16 24 H 0.07 1.85 7.13 -2.39 -0.02 1.83 16 25 H 0.04 1.74 4.30 -2.39 -0.01 1.73 16 26 H 0.04 1.49 8.12 -2.38 -0.02 1.47 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.03 1.30 2.25 -2.39 -0.01 1.29 16 29 H 0.08 2.01 6.86 -2.39 -0.02 1.99 16 30 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.41 8.64 6.27 -92.71 -0.58 8.06 16 34 H 0.42 3.88 8.49 -92.71 -0.79 3.10 16 35 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -77.69 333.54 1.80 -75.89 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -0.58 Total: 20.12 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 7.09 Total: -7.37 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -6.20 Total: -105.33 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.06 Total: -26.71 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.56 Total: 43.40 kcal Total: -77.69 1.80 -75.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458540400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.092 kcal (2) G-P(sol) polarization free energy of solvation -77.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds