Wall clock time and date at job start Tue Mar 31 2020 00:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47094 * 2 1 4 4 N 1.30273 * 126.28427 * 89.97138 * 3 2 1 5 5 N 1.28671 * 109.38246 * 180.02562 * 4 3 2 6 6 C 1.30277 * 109.38078 * 0.02562 * 5 4 3 7 7 C 1.50695 * 126.28382 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47482 * 166.69653 * 7 6 5 9 9 C 1.53005 * 109.47063 * 286.69952 * 7 6 5 10 10 N 1.46901 * 109.47036 * 46.69251 * 7 6 5 11 11 C 1.46846 * 111.00131 * 178.70394 * 10 7 6 12 12 C 1.53031 * 109.52546 * 174.16687 * 11 10 7 13 13 C 1.53118 * 109.28413 * 59.17904 * 12 11 10 14 14 C 1.50700 * 109.52662 * 182.44260 * 13 12 11 15 15 H 1.08004 * 119.99692 * 119.68343 * 14 13 12 16 16 C 1.37878 * 119.99909 * 299.68363 * 14 13 12 17 17 N 1.31510 * 120.00074 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99645 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47530 * 90.00164 * 18 16 14 20 20 H 1.48503 * 109.46842 * 209.99930 * 18 16 14 21 21 H 1.48498 * 109.47439 * 329.99692 * 18 16 14 22 22 C 1.53120 * 109.15760 * 302.35211 * 13 12 11 23 23 C 1.46851 * 110.99864 * 54.49931 * 10 7 6 24 24 O 1.34361 * 107.43209 * 0.23829 * 6 5 4 25 25 H 1.09001 * 109.47104 * 299.99921 * 1 2 3 26 26 H 1.09000 * 109.47828 * 59.99848 * 1 2 3 27 27 H 1.09005 * 109.46914 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47104 * 240.00079 * 2 1 3 29 29 H 1.08995 * 109.47704 * 119.99676 * 2 1 3 30 30 H 1.09000 * 109.46979 * 179.97438 * 9 7 6 31 31 H 1.09001 * 109.46438 * 299.99659 * 9 7 6 32 32 H 1.09000 * 109.47216 * 59.99538 * 9 7 6 33 33 H 1.08998 * 109.46335 * 294.18358 * 11 10 7 34 34 H 1.09004 * 109.46143 * 54.14780 * 11 10 7 35 35 H 1.09011 * 109.50227 * 299.23750 * 12 11 10 36 36 H 1.09002 * 109.50682 * 179.12335 * 12 11 10 37 37 H 1.08999 * 109.51931 * 62.25172 * 13 12 11 38 38 H 0.97002 * 119.99828 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.50130 * 297.70547 * 22 13 12 40 40 H 1.09004 * 109.50542 * 177.59509 * 22 13 12 41 41 H 1.08998 * 109.46153 * 305.85244 * 23 10 7 42 42 H 1.08999 * 109.46202 * 65.81731 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2887 2.1479 1.0501 5 7 2.6988 3.3087 0.6760 6 6 2.7173 3.3619 -0.6255 7 6 3.1338 4.5428 -1.4639 8 1 3.2719 4.2243 -2.4972 9 6 2.0485 5.6196 -1.4030 10 7 4.3955 5.0896 -0.9472 11 6 4.8489 6.2254 -1.7600 12 6 6.0818 6.8588 -1.1113 13 6 7.1916 5.8094 -1.0030 14 6 8.3874 6.4106 -0.3105 15 1 8.7459 5.9849 0.6151 16 6 9.0238 7.5041 -0.8586 17 7 8.5875 8.0220 -1.9860 18 14 10.5065 8.2488 -0.0006 19 1 11.7446 7.5934 -0.4933 20 1 10.5675 9.7038 -0.2913 21 1 10.3863 8.0414 1.4649 22 6 6.6774 4.6161 -0.1928 23 6 5.4274 4.0478 -0.8682 24 8 2.2914 2.1726 -1.0831 25 1 -0.3633 0.5138 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8899 30 1 2.3499 6.4740 -2.0091 31 1 1.1123 5.2139 -1.7864 32 1 1.9103 5.9382 -0.3698 33 1 5.1038 5.8770 -2.7608 34 1 4.0520 6.9662 -1.8256 35 1 5.8240 7.2200 -0.1156 36 1 6.4274 7.6921 -1.7231 37 1 7.4766 5.4764 -2.0009 38 1 9.0351 8.7915 -2.3713 39 1 6.4291 4.9419 0.8173 40 1 7.4486 3.8470 -0.1484 41 1 5.0506 3.2068 -0.2860 42 1 5.6795 3.7095 -1.8732 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541022408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:42 Heat of formation + Delta-G solvation = 7.233865 kcal Electronic energy + Delta-G solvation = -22340.456301 eV Core-core repulsion = 19128.132916 eV Total energy + Delta-G solvation = -3212.323385 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.32093 -40.20677 -37.24081 -36.67696 -35.25743 -34.05568 -31.84708 -31.43034 -30.12897 -27.48717 -26.05659 -25.44992 -23.97163 -23.55159 -22.82171 -21.86776 -20.42837 -18.70004 -18.40301 -18.11821 -17.27521 -16.52280 -16.46925 -16.05300 -15.61697 -15.04886 -14.99872 -14.58354 -14.46935 -14.22406 -13.75064 -13.61014 -13.45144 -13.38106 -12.96856 -12.92733 -12.80935 -12.68376 -12.63134 -12.58502 -12.27259 -12.21070 -12.06034 -11.92772 -11.82964 -11.36080 -10.89690 -10.71299 -10.50942 -10.36901 -9.35227 -8.08124 -6.20220 0.08512 1.10574 1.32940 1.40952 1.42408 1.52517 2.44420 2.73922 2.77205 3.19078 3.44354 3.73941 3.88456 3.99814 4.07038 4.13942 4.19879 4.26382 4.32938 4.37187 4.41470 4.49260 4.61558 4.72918 4.74408 4.79062 4.85078 4.91053 4.92076 5.00202 5.05197 5.15319 5.23198 5.26762 5.30481 5.53019 5.62063 5.93101 5.95848 6.12287 6.22309 6.41643 6.88962 7.27928 7.46904 8.96655 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.036122 B = 0.003728 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.968983 B = 7508.988414 C = 7953.659657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.026 4.026 3 C 0.167 3.833 4 N -0.327 5.327 5 N -0.293 5.293 6 C 0.172 3.828 7 C 0.176 3.824 8 H 0.084 0.916 9 C -0.136 4.136 10 N -0.528 5.528 11 C 0.069 3.931 12 C -0.095 4.095 13 C 0.047 3.953 14 C -0.535 4.535 15 H 0.045 0.955 16 C 0.017 3.983 17 N -0.913 5.913 18 Si 0.951 3.049 19 H -0.277 1.277 20 H -0.280 1.280 21 H -0.273 1.273 22 C -0.095 4.095 23 C 0.072 3.928 24 O -0.230 6.230 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.095 0.905 35 H 0.030 0.970 36 H 0.071 0.929 37 H -0.005 1.005 38 H 0.261 0.739 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.414 -13.424 -2.244 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.044 4.044 4 N -0.172 5.172 5 N -0.138 5.138 6 C -0.040 4.040 7 C 0.067 3.933 8 H 0.102 0.898 9 C -0.194 4.194 10 N -0.256 5.256 11 C -0.057 4.057 12 C -0.133 4.133 13 C 0.028 3.972 14 C -0.573 4.573 15 H 0.063 0.937 16 C -0.182 4.182 17 N -0.553 5.553 18 Si 0.777 3.223 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.198 1.198 22 C -0.133 4.133 23 C -0.056 4.056 24 O -0.109 6.109 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.123 0.877 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.113 0.887 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.013 0.987 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -17.339 -12.751 -0.641 21.532 hybrid contribution 1.282 -0.036 -1.387 1.889 sum -16.056 -12.788 -2.028 20.626 Atomic orbital electron populations 1.21795 0.91478 1.04834 1.02313 1.20542 0.97922 0.80438 1.07503 1.29101 0.97512 0.98910 0.78903 1.74390 1.16728 0.98972 1.27154 1.74433 1.16159 1.12962 1.10272 1.28011 0.97665 0.86854 0.91514 1.20155 0.92428 0.87207 0.93549 0.89808 1.21907 0.96162 0.97353 1.03966 1.61906 1.01982 1.08786 1.52877 1.22218 0.98138 0.91910 0.93462 1.21434 0.93083 0.99839 0.98979 1.18646 0.93094 0.91824 0.93611 1.21530 1.13603 1.13914 1.08268 0.93656 1.25659 0.99778 0.97185 0.95603 1.69975 1.41573 1.24043 1.19693 0.85670 0.80017 0.77674 0.78968 1.20239 1.20580 1.19805 1.21496 0.94632 0.98082 0.99112 1.21945 0.92230 0.92991 0.98387 1.84777 1.64222 1.23089 1.38847 0.92883 0.92401 0.87702 0.86157 0.85785 0.88812 0.89837 0.91905 0.95136 0.88722 0.95120 0.91088 0.98680 0.92944 0.93648 0.93217 0.92959 0.95073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 71.98 0.71 -0.71 16 2 C -0.03 -0.32 6.56 29.85 0.20 -0.13 16 3 C 0.17 4.07 7.73 88.34 0.68 4.75 16 4 N -0.33 -10.45 12.22 -165.50 -2.02 -12.48 16 5 N -0.29 -10.39 11.93 -165.50 -1.97 -12.37 16 6 C 0.17 5.25 5.55 88.34 0.49 5.74 16 7 C 0.18 4.93 2.62 44.17 0.12 5.04 16 8 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 9 C -0.14 -3.07 8.99 71.98 0.65 -2.42 16 10 N -0.53 -18.60 4.52 -875.53 -3.96 -22.56 16 11 C 0.07 2.51 5.24 86.32 0.45 2.96 16 12 C -0.09 -4.48 5.12 30.64 0.16 -4.32 16 13 C 0.05 2.39 2.16 -11.46 -0.02 2.37 16 14 C -0.54 -30.35 8.56 25.60 0.22 -30.13 16 15 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 16 C 0.02 0.92 5.31 84.66 0.45 1.37 16 17 N -0.91 -52.28 11.37 21.45 0.24 -52.04 16 18 Si 0.95 44.34 29.54 68.60 2.03 46.36 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 22 C -0.10 -4.27 5.32 30.64 0.16 -4.11 16 23 C 0.07 2.75 5.21 86.32 0.45 3.20 16 24 O -0.23 -6.15 10.87 -3.65 -0.04 -6.19 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.86 6.31 -2.39 -0.02 1.85 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 2.91 6.05 -2.38 -0.01 2.89 16 35 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.07 3.70 6.18 -2.39 -0.01 3.69 16 37 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 39 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 41 H 0.05 1.98 6.49 -2.39 -0.02 1.96 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -68.39 335.11 -0.02 -68.40 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.00 Total: 7.23 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 4.71 Total: -16.37 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -7.71 Total: -99.44 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.04 Total: -6.19 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -68.39 -0.02 -68.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541022408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.638 kcal (2) G-P(sol) polarization free energy of solvation -68.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds