Wall clock time and date at job start Tue Mar 31 2020 01:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47336 * 2 1 4 4 C 1.50705 * 109.46755 * 119.99810 * 2 1 3 5 5 N 1.29942 * 126.29138 * 300.02079 * 4 2 1 6 6 O 1.21300 * 110.25120 * 179.68649 * 5 4 2 7 7 C 1.33641 * 109.81226 * 0.46988 * 6 5 4 8 8 C 1.50705 * 126.55145 * 179.79985 * 7 6 5 9 9 N 1.46899 * 109.46990 * 269.69026 * 8 7 6 10 10 C 1.46847 * 110.99862 * 170.00184 * 9 8 7 11 11 C 1.53044 * 109.51335 * 174.15436 * 10 9 8 12 12 C 1.53119 * 109.27589 * 59.18419 * 11 10 9 13 13 C 1.50703 * 109.51728 * 182.37636 * 12 11 10 14 14 H 1.08001 * 120.00215 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99699 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99840 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46978 * 90.00182 * 17 15 13 19 19 H 1.48501 * 109.46964 * 210.00444 * 17 15 13 20 20 H 1.48501 * 109.47042 * 330.00160 * 17 15 13 21 21 C 1.53120 * 109.16202 * 302.34077 * 12 11 10 22 22 C 1.46847 * 110.99299 * 45.79343 * 9 8 7 23 23 N 1.31132 * 106.89514 * 359.54164 * 7 6 5 24 24 H 1.09002 * 109.46700 * 299.99858 * 1 2 3 25 25 H 1.08999 * 109.46776 * 60.00130 * 1 2 3 26 26 H 1.08997 * 109.47237 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47059 * 239.99507 * 2 1 3 28 28 H 1.08996 * 109.46712 * 59.99822 * 3 2 1 29 29 H 1.08992 * 109.46886 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.46935 * 300.00042 * 3 2 1 31 31 H 1.09002 * 109.46547 * 149.69015 * 8 7 6 32 32 H 1.08997 * 109.46818 * 29.68917 * 8 7 6 33 33 H 1.09002 * 109.46448 * 54.14158 * 10 9 8 34 34 H 1.08994 * 109.45958 * 294.16523 * 10 9 8 35 35 H 1.09000 * 109.49745 * 179.12223 * 11 10 9 36 36 H 1.08999 * 109.49729 * 299.20033 * 11 10 9 37 37 H 1.08993 * 109.52284 * 62.25342 * 12 11 10 38 38 H 0.97004 * 119.99580 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.50328 * 177.59853 * 21 12 11 40 40 H 1.09004 * 109.50202 * 297.68149 * 21 12 11 41 41 H 1.09005 * 109.46836 * 65.83946 * 22 9 8 42 42 H 1.08995 * 109.45748 * 305.85482 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7946 -0.3749 2.4632 6 8 2.3361 -1.1514 3.2216 7 6 2.9990 -2.0784 2.5236 8 6 3.8058 -3.2197 3.0872 9 7 5.1988 -2.7909 3.2708 10 6 5.9603 -3.7885 4.0332 11 6 7.4345 -3.3802 4.0796 12 6 7.5573 -2.0037 4.7391 13 6 9.0007 -1.5704 4.7350 14 1 9.7558 -2.2117 4.3049 15 6 9.3570 -0.3548 5.2794 16 7 8.4374 0.4262 5.8027 17 14 11.1462 0.1820 5.2751 18 1 11.4335 0.9367 4.0288 19 1 11.4051 1.0512 6.4510 20 1 12.0223 -1.0151 5.3420 21 6 6.7162 -0.9935 3.9539 22 6 5.2628 -1.4709 3.9111 23 7 2.8087 -1.8084 1.2546 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 3.7731 -4.0631 2.3974 32 1 3.3883 -3.5199 4.0483 33 1 5.8680 -4.7619 3.5514 34 1 5.5676 -3.8471 5.0483 35 1 7.9969 -4.1126 4.6587 36 1 7.8317 -3.3354 3.0655 37 1 7.1963 -2.0583 5.7660 38 1 8.6881 1.2813 6.1860 39 1 6.7654 -0.0207 4.4431 40 1 7.1024 -0.9099 2.9380 41 1 4.8734 -1.5406 4.9269 42 1 4.6640 -0.7612 3.3405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541951516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:53 Heat of formation + Delta-G solvation = 55.069566 kcal Electronic energy + Delta-G solvation = -22259.684341 eV Core-core repulsion = 19049.435268 eV Total energy + Delta-G solvation = -3210.249073 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -45.50556 -38.47480 -36.89352 -34.98265 -33.92158 -32.16770 -30.85628 -29.90661 -27.45776 -27.42663 -24.93105 -24.57730 -23.12092 -22.16486 -21.48073 -19.96327 -18.66632 -18.06889 -17.45851 -16.39806 -15.40649 -15.22093 -15.16562 -14.49991 -14.45436 -14.08498 -13.62130 -13.43764 -13.05221 -12.59851 -12.48725 -12.45573 -12.23266 -11.88953 -11.81592 -11.74546 -11.55749 -11.27377 -11.20956 -10.95185 -10.85024 -10.79941 -10.50797 -10.28114 -10.03603 -9.84288 -9.49058 -9.01419 -8.76035 -8.31028 -7.98520 -5.98022 -4.03486 1.21068 2.29960 2.86843 3.31743 3.38555 3.41449 3.57358 4.06001 4.27790 4.45201 4.68452 4.83070 4.84180 5.09491 5.24943 5.32358 5.37328 5.43747 5.54670 5.56951 5.59910 5.65531 5.74036 5.85349 5.93938 5.96526 6.01083 6.07925 6.14688 6.19924 6.48983 6.54878 6.78770 6.98829 7.03294 7.30804 7.46241 7.51014 7.77401 8.01014 8.11838 8.26010 8.46264 9.00127 9.61234 11.08250 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.004104 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.900934 B = 6821.346602 C = 7598.522022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.003 4.003 3 C -0.146 4.146 4 C 0.171 3.829 5 N -0.382 5.382 6 O 0.074 5.926 7 C 0.198 3.802 8 C 0.143 3.857 9 N -0.527 5.527 10 C 0.061 3.939 11 C -0.106 4.106 12 C 0.047 3.953 13 C -0.511 4.511 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.102 4.102 22 C 0.054 3.946 23 N -0.470 5.470 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.023 0.977 38 H 0.259 0.741 39 H 0.094 0.906 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.444 -4.105 -8.308 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 C -0.204 4.204 4 C -0.102 4.102 5 N -0.090 5.090 6 O 0.016 5.984 7 C -0.023 4.023 8 C 0.013 3.987 9 N -0.254 5.254 10 C -0.066 4.066 11 C -0.144 4.144 12 C 0.029 3.971 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.140 4.140 22 C -0.073 4.073 23 N -0.204 5.204 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.693 -3.264 -8.875 17.473 hybrid contribution 0.677 0.270 0.924 1.177 sum -14.016 -2.994 -7.951 16.390 Atomic orbital electron populations 1.21841 0.93084 1.02385 1.02850 1.19532 0.96157 0.95488 0.91086 1.21851 1.01885 0.93887 1.02797 1.25821 0.96847 0.92975 0.94559 1.74545 1.18189 1.13415 1.02856 1.85333 1.47945 1.29722 1.35404 1.28605 0.94085 0.93685 0.85967 1.20702 0.87796 0.89756 1.00402 1.62306 1.06941 1.04296 1.51888 1.22192 0.96195 0.93516 0.94669 1.21690 0.91611 0.99837 1.01272 1.18695 0.95234 0.89011 0.94163 1.21190 0.92736 1.02938 1.38059 0.92657 1.24973 0.97150 0.96692 0.95200 1.69870 1.32451 1.11110 1.39652 0.86628 0.85519 0.78577 0.77473 1.20746 1.21325 1.19943 1.21666 0.89344 1.02796 1.00234 1.22401 1.01421 0.88023 0.95502 1.71908 1.16255 1.14216 1.18040 0.91906 0.91170 0.92410 0.88111 0.91864 0.91990 0.91177 0.86629 0.91474 0.91659 0.94981 0.92675 0.92234 0.95933 0.93065 0.88791 0.93757 0.94989 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.18 37.16 0.34 -0.96 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.15 -1.52 9.18 37.16 0.34 -1.18 16 4 C 0.17 2.53 6.72 -156.37 -1.05 1.48 16 5 N -0.38 -6.11 12.16 30.90 0.38 -5.73 16 6 O 0.07 1.19 10.57 18.11 0.19 1.38 16 7 C 0.20 3.02 6.17 -13.05 -0.08 2.94 16 8 C 0.14 1.92 5.90 -4.97 -0.03 1.89 16 9 N -0.53 -8.96 4.80 -236.11 -1.13 -10.09 16 10 C 0.06 1.00 5.43 -3.83 -0.02 0.98 16 11 C -0.11 -2.12 5.32 -26.65 -0.14 -2.26 16 12 C 0.05 1.15 2.16 -91.65 -0.20 0.96 16 13 C -0.51 -13.87 8.57 -34.44 -0.29 -14.16 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 16 N -0.89 -25.37 11.37 55.43 0.63 -24.74 16 17 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.10 -2.42 5.12 -26.65 -0.14 -2.55 16 22 C 0.05 1.06 5.00 -3.83 -0.02 1.04 16 23 N -0.47 -7.49 11.55 -9.87 -0.11 -7.61 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 0.76 8.08 -51.93 -0.42 0.35 16 33 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.09 2.50 6.17 -51.93 -0.32 2.18 16 40 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.93 6.04 -51.93 -0.31 0.62 16 LS Contribution 337.21 15.07 5.08 5.08 Total: -1.00 -29.70 337.21 -8.62 -38.32 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.94 Total: -2.26 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -1.70 Total: -10.59 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.24 Total: -48.17 kcal Atomic # 8 Polarization: 1.19 SS G_CDS: 0.19 Total: 1.38 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.70 -8.62 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.389 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds