Wall clock time and date at job start Tue Mar 31 2020 01:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00495 * 2 1 4 4 C 1.50699 * 109.47155 * 179.97438 * 3 2 1 5 5 C 1.35646 * 119.79652 * 359.97438 * 4 3 2 6 6 C 1.41986 * 118.59956 * 180.02562 * 5 4 3 7 7 N 1.31474 * 120.91333 * 180.02562 * 6 5 4 8 8 C 1.46504 * 119.99682 * 185.79551 * 7 6 5 9 9 C 1.52994 * 109.47270 * 115.25743 * 8 7 6 10 10 C 1.53000 * 109.46930 * 299.99727 * 9 8 7 11 11 C 1.53002 * 109.47337 * 59.99746 * 9 8 7 12 12 C 1.52998 * 109.47198 * 179.97438 * 9 8 7 13 13 C 1.50702 * 109.47175 * 179.97438 * 12 9 8 14 14 H 1.08008 * 119.99817 * 0.02562 * 13 12 9 15 15 C 1.37873 * 120.00043 * 180.02562 * 13 12 9 16 16 N 1.31515 * 119.99981 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00172 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46878 * 90.00153 * 17 15 13 19 19 H 1.48498 * 109.47460 * 210.00330 * 17 15 13 20 20 H 1.48506 * 109.47065 * 330.00379 * 17 15 13 21 21 N 1.38032 * 118.16389 * 0.27812 * 6 5 4 22 22 H 0.96996 * 120.30985 * 179.73061 * 21 6 5 23 23 C 1.35656 * 119.37431 * 359.45088 * 21 6 5 24 24 N 1.30408 * 121.42110 * 0.56295 * 23 21 6 25 25 H 1.08993 * 109.47401 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47222 * 300.00333 * 1 2 3 27 27 H 1.09002 * 109.47084 * 59.99635 * 1 2 3 28 28 H 1.09004 * 109.46771 * 59.99954 * 3 2 1 29 29 H 1.08999 * 109.47076 * 300.00230 * 3 2 1 30 30 H 1.08004 * 120.69622 * 0.02562 * 5 4 3 31 31 H 1.09007 * 109.46917 * 235.25649 * 8 7 6 32 32 H 1.09002 * 109.47083 * 355.25205 * 8 7 6 33 33 H 1.09004 * 109.47257 * 60.00440 * 10 9 8 34 34 H 1.09001 * 109.47539 * 179.97438 * 10 9 8 35 35 H 1.09002 * 109.47465 * 299.99997 * 10 9 8 36 36 H 1.08994 * 109.46737 * 60.00199 * 11 9 8 37 37 H 1.09001 * 109.47159 * 180.02562 * 11 9 8 38 38 H 1.09003 * 109.46722 * 300.00336 * 11 9 8 39 39 H 1.08994 * 109.47363 * 300.00100 * 12 9 8 40 40 H 1.09002 * 109.47006 * 60.00120 * 12 9 8 41 41 H 0.96998 * 119.99978 * 180.02562 * 16 15 13 42 42 H 1.08000 * 119.29128 * 180.30308 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.0915 -0.0404 0.0016 6 6 5.5090 -0.1231 0.0028 7 7 6.1176 -1.2884 0.0032 8 6 7.5755 -1.3533 0.1325 9 6 7.9406 -2.0511 1.4442 10 6 7.3590 -1.2635 2.6199 11 6 7.3650 -3.4686 1.4453 12 6 9.4631 -2.1194 1.5789 13 6 9.8228 -2.8061 2.8712 14 1 9.0433 -3.1590 3.5304 15 6 11.1468 -2.9839 3.2121 16 7 11.4607 -3.5837 4.3397 17 14 12.4949 -2.3743 2.0718 18 1 12.8490 -0.9765 2.4269 19 1 13.6931 -3.2399 2.2145 20 1 12.0144 -2.4217 0.6675 21 7 6.2302 1.0538 0.0087 22 1 7.1999 1.0337 0.0136 23 6 5.5700 2.2389 0.0019 24 7 4.2669 2.2912 0.0008 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.4869 -0.9354 0.0015 31 1 7.9899 -1.9144 -0.7051 32 1 7.9856 -0.3434 0.1317 33 1 6.2742 -1.2152 2.5238 34 1 7.6187 -1.7608 3.5545 35 1 7.7691 -0.2536 2.6192 36 1 7.7794 -4.0296 0.6078 37 1 7.6247 -3.9656 2.3800 38 1 6.2803 -3.4203 1.3491 39 1 9.8772 -2.6806 0.7413 40 1 9.8736 -1.1096 1.5780 41 1 12.3922 -3.7085 4.5797 42 1 6.1356 3.1589 0.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567644161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:01 Heat of formation + Delta-G solvation = 12.006469 kcal Electronic energy + Delta-G solvation = -21754.390057 eV Core-core repulsion = 18542.273627 eV Total energy + Delta-G solvation = -3212.116429 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99230 -38.26185 -37.41311 -35.16326 -33.58127 -32.28813 -30.50304 -28.71267 -27.56780 -26.45754 -26.33868 -25.42107 -23.88503 -22.67821 -21.03322 -18.80142 -18.07506 -17.38785 -16.75568 -16.62015 -16.25610 -15.88049 -15.32972 -15.01626 -14.50250 -14.09292 -13.95315 -13.47372 -13.37415 -13.05190 -12.69674 -12.45975 -12.30022 -11.94288 -11.66930 -11.45031 -11.07977 -10.98246 -10.89207 -10.68271 -10.50331 -10.30368 -10.02376 -9.89909 -9.84562 -9.69506 -9.48414 -9.05611 -8.91273 -8.51203 -7.38052 -6.00885 -3.97252 0.78018 1.94097 2.83619 3.17407 3.29264 3.37741 3.40721 3.59477 4.28448 4.28823 4.46453 4.77783 4.98292 5.02160 5.10600 5.21626 5.22795 5.31858 5.37889 5.41444 5.49770 5.71783 5.77165 5.86472 6.04408 6.10135 6.32906 6.42698 6.57506 6.64280 6.69786 6.81540 6.83459 6.95016 7.10035 7.15805 7.21057 7.34124 7.45407 7.82269 7.84955 8.23005 8.59430 9.05229 9.61698 11.12304 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.030041 B = 0.003562 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.828241 B = 7858.054948 C = 8331.232213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.120 3.880 4 C 0.121 3.879 5 C -0.161 4.161 6 C 0.376 3.624 7 N -0.557 5.557 8 C 0.059 3.941 9 C -0.042 4.042 10 C -0.124 4.124 11 C -0.118 4.118 12 C -0.004 4.004 13 C -0.507 4.507 14 H 0.078 0.922 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.876 3.124 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.267 1.267 21 N -0.664 5.664 22 H 0.417 0.583 23 C 0.381 3.619 24 N -0.557 5.557 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.158 0.842 31 H 0.075 0.925 32 H 0.020 0.980 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.015 0.985 40 H 0.006 0.994 41 H 0.262 0.738 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 13.285 -10.674 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.304 6.304 3 C 0.043 3.957 4 C 0.004 3.996 5 C -0.186 4.186 6 C 0.108 3.892 7 N -0.283 5.283 8 C -0.071 4.071 9 C -0.043 4.043 10 C -0.182 4.182 11 C -0.175 4.175 12 C -0.042 4.042 13 C -0.545 4.545 14 H 0.096 0.904 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.704 3.296 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.191 1.191 21 N -0.295 5.295 22 H 0.258 0.742 23 C 0.093 3.907 24 N -0.281 5.281 25 H 0.108 0.892 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.175 0.825 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.024 0.976 41 H 0.071 0.929 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -18.178 12.652 -10.623 24.563 hybrid contribution 2.118 0.564 -0.439 2.236 sum -16.060 13.216 -11.062 23.557 Atomic orbital electron populations 1.22759 0.80260 1.03152 1.00072 1.87864 1.20087 1.26928 1.95529 1.20829 0.88202 0.84985 1.01668 1.20099 0.94848 0.88683 0.95972 1.21278 0.90374 0.99913 1.07010 1.20363 0.92617 0.81726 0.94531 1.73329 1.11224 1.18179 1.25552 1.22155 0.87099 0.97884 0.99961 1.20429 0.97271 0.95387 0.91208 1.21714 0.98079 0.98614 0.99764 1.21599 0.98996 0.95278 1.01621 1.19649 0.90443 0.96098 0.97965 1.21126 0.92967 1.36811 1.03566 0.90421 1.25019 0.98652 0.94979 0.94943 1.69909 1.18044 1.43563 1.22937 0.86844 0.81859 0.78765 0.82166 1.20541 1.21481 1.19145 1.44454 1.12247 1.06869 1.65954 0.74209 1.24713 0.89417 0.89555 0.87028 1.67666 1.03803 1.31037 1.25623 0.89230 0.93848 0.93921 0.91040 0.91079 0.82457 0.90656 0.96194 0.94584 0.91281 0.94870 0.94164 0.92022 0.93556 0.96634 0.97586 0.92863 0.78458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.01 9.15 -35.23 -0.32 -4.33 16 3 C 0.12 1.15 6.49 36.01 0.23 1.38 16 4 C 0.12 1.45 6.76 -82.67 -0.56 0.89 16 5 C -0.16 -2.22 9.39 -39.07 -0.37 -2.59 16 6 C 0.38 5.49 7.36 -155.64 -1.15 4.34 16 7 N -0.56 -9.50 9.07 -60.06 -0.54 -10.04 16 8 C 0.06 1.03 5.24 -4.04 -0.02 1.01 16 9 C -0.04 -0.87 0.60 -154.51 -0.09 -0.96 16 10 C -0.12 -2.50 8.06 37.16 0.30 -2.20 16 11 C -0.12 -2.45 8.06 37.16 0.30 -2.15 16 12 C 0.00 -0.09 3.11 -27.88 -0.09 -0.18 16 13 C -0.51 -14.19 8.20 -34.44 -0.28 -14.47 16 14 H 0.08 2.34 5.92 -52.48 -0.31 2.03 16 15 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 16 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 17 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 N -0.66 -7.44 5.31 -13.08 -0.07 -7.51 16 22 H 0.42 4.23 6.33 -40.82 -0.26 3.97 16 23 C 0.38 3.42 12.40 -89.89 -1.11 2.30 16 24 N -0.56 -6.12 10.29 -10.60 -0.11 -6.23 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.16 2.27 6.98 -52.48 -0.37 1.90 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.02 0.31 5.47 -51.93 -0.28 0.02 16 33 H 0.04 0.69 7.48 -51.93 -0.39 0.30 16 34 H 0.07 1.54 6.62 -51.93 -0.34 1.20 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.39 6.62 -51.93 -0.34 1.05 16 38 H 0.05 0.91 7.60 -51.93 -0.39 0.52 16 39 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 40 H 0.01 0.14 7.57 -51.93 -0.39 -0.26 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 42 H 0.20 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -33.69 337.46 -8.11 -41.80 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.43 Total: 0.82 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.82 Total: -9.49 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.05 Total: -50.95 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.32 Total: -4.33 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.69 -8.11 -41.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567644161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.808 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds